Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <xxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                  <---------TOE2(1)                                                                                  <---------TOE1(1)                                                                               --------->ZAT18                                                                               <---------ZAT18                                                                              <---------ANAC58                                                                              <---------ANAC58           <---------ARR14(2)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           --------->ARR14(2)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->At4g35610                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---------MYB52(1)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----------TGA1        --------->ARR14(2)------>NtERF2             --------->TOE2(3)      --------->YAB1 ----------HVH21  ------>NtERF2         --------->LBD16            --------->TOE1(3)  <------ZmHOX2a(1) --->MYB52(1)    --------->DEAR3(1)   <---------LBD16 ------>ZmHOX2a(1)  <xxxxxxxxxxxxxxxxsmallRNA(s)   ccgtcagcaagacgattcgcctccctatacacatgaacaatgcggacaatccagtccttcgaaatgaaaccatagcacaagcgtactaggaacgataatg  6521100                                            --------->LBD16                                           <---------ANAC58                                           <---------ANAC58                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      -----                                     ------->GAMYB  ------->GAMYB                               -----                                 --------->MYB46(3)--------->MYB46(3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           -------->P--------->LBD16 --------->AtMYB61            --------->HSFB2a(2)--------->ANAC58        <---------MYB52(2)    --------->ANAC46--------->REM1(2)   <---------HSFB2a(2)--------->ANAC58 xxxxxxxxxxxxxsmallRNA(fl3)   <---------ETT(1)<-----------HVH21 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxx>smallRNA(s2) ----------->GT1 --------->MYB46(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----   ggtgagactcactaacccttgtccgtaaaaacccgacaaccatctccgtgtcaacctccaattccactctcgaagccttcttctcccatgccaaatacaa  6521200                                                         --------->KAN4(2)                                                        --------->HSFB2a(1)                                                        <---------HSFB2a(1)                          ---------->DOF2             <------ZmHOX2a(1)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      --------->LBD16           --------->ANAC58                           <---------ICU4                     --------->ANAC58           --------->ANAC46                           --------->ATHB12    <-----------GT1  --------->ANAC58           --------->ANAC58    --------->ATHB12      <---------YAB1 ---->ANAC58        <---------LBD16          <---------ATHB12      <---------YAB1    xxxxxxxxxxxxxxxx ---->ANAC46  ---------->DOF2 <xxxxxxxxxxxxxxxxsmallRNA(i)        <-----------TGA1 --------->ZAT6 ---->ANAC58--------->LBD16--------->DAG2  --------->WOX13(1)    --------->YAB1  <-----------GT1   cccataatacattccccaaagctccgcaaaaagggcagaacatattaatcaagccaggacgttcccatcgtcattgaaatgttttacactagatgattac  6521300                  <-----------GT1                 --------->ZAT18                                             <------MYB46(1)                 <---------ZAT14        ------>MYB83                         <------MYB83            <---------YAB1              ------>MYB46(1)                 --------->ATHB12          <---------ICU4              <---------MYB46(2)               <---------YAB1          --------->YAB1              <---------MYB111(1)            <---------ICU4         --------->ICU4              --------->ANAC46                --------->YAB1<-----------RAV1(1)         <---------ATHB51          <---------ALFIN1      --------->ATHB12   --------->MYB59    <------ZmHOX2a(1)       <---------YAB1       --------->ZAT6     <---------ATHB51        --------- xxxxxxx>smallRNA(si3)    <-----------GT1      <-----------GT1      --------->ICU4<xxxxxxxxxxxxxxxxxx   gctcaaggacaattatgagtttactattttactattcccacctaatgttttacactagatgatttggacaattatgatttggtatatgtggcaagtgttg  6521400                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                  ---                                --------->AHL20(2)                                                ---                     <---------AHL20(2)                                                           ---                     --------->AHL20(2)                                                           <--                     <---------AHL20(1)                                                           <--                <---------AHL20(2)                                                             ------                --------->AHL20(2)                                                       <---------ANAC55(2)            --------->ATHB12 --------->YAB1                                              <---------ANAC46            <--------ATHB1--------->YAB1                                                 <---------YAB1           <---------ATHB12 <---------YAB1                                           --------->AHL20(1)       <---------YAB1--------->AHL20(1)                                            <---------AHL20(1)     --------->GLK1(1)   --------->AHL20(2)          <----------DOF2<-----------GT1<---------AHL20(2)     <---------GLK1(1)  --------->AHL20(2)--------->ZAT14  <---------ANAC58  ----------->GT1   <----- <---------TOE2(3)  <---------AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->AHL20(1) >ALFIN1   --------->ICU4<---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->AHL20(2) xxxxxsmallRNA(se3) --------->AHL20(2)    <---------ZAT14  <---------ANAC58  --------->AtLEC2 -------   tttatggatatcaatgatttaaataaatttataataaactagactacagcccagactttgtgcgtgcttaaaactattcatgtaaaatattatgtataaa  6521500                                 --------->ANAC58     <---------LBD16  <----------DOF2 <---------YAB1    ------>ZmHOX2a(2) --------ICU4     <------ZmHOX2a(2) ------->YAB1     --------->GLK1(1)                                                         --------- ------>ATHB1     <---------GLK1(1)                                                         --------- ------>AHL20(2) <---------ARR14(2)                                                         <-------- ------>ICU4     --------->ARR14(2)             <---------TOE2(3)                           <-------- ------>AHL20(1) <---------AGP1  --------->ANAC46                                          --------->AHL20(2) -------YAB1     --------->ARR11(3)        --------->YAB1                       <---------AHL20(2) -------AHL20(2) <---------ARR11(3)       <---------YAB1                     --------->AHL20(1) --->AHL20(2)    <---------ARR14(3)    --------->TOE1(2)                     <---------AHL20(1)   <-- ----AHL20(2)    --------->ARR14(3)    --------->TOE2(2)                     --------->AHL20(2)  <--- -->AHL20(2)------>ZmHOX2a(2)    --------->ANAC58*TSS              ----------->GT1       --------->YAB1   attattatctgggatcgaagatctctttgtataaaacgaaacatatgataaacgttgttatgttctattcagttacaaatattttatgtaagaataaatt  6521600                                                                                  <---------AHL20(2)                                                                                 --------->AHL20(2)                                                          --------->DAG2       --------------->AGL15                                                         ---------->DOF2       <---------------AGL15    <-----------GT1                               <---------ANAC46            --------->YAB1 >AHL20(1)                                       --------->ALFIN1            <---------YAB1 >AHL20(2)                                       <---------AtMYB61          <-----------GT1 -AHL20(1)                                      <-------MYC3               --------->YAB1 -AHL20(2) <-----------GT1           ---------->DOF2<---------ANAC46--------->AHL20(2) -------YAB1                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------YAB1   --------->ARR14(2) --------GT1   <----------DOF2  ----------->GT1 ------->MYC3      <---------TOE2(3)        <---------ARR14(2)   ttcatttttcatttcacctttgaaatatttgagcatgaaaaaagcttacatgtggtggaaaaagttttaatgaaatattatcattttatagcaaatatgt  6521700                   <---------AHL20(2)                   --------->AHL20(2)                  <---------AHL20(2)                  --------->AHL20(2)               --------->YAB1               --------->ATHB51               <--------ATHB1               <---------ICU4           <------MYB46(1)               -------->HAHB4           <------MYB83               <--------HAHB4         <---------WOX13(1)              --------->AHL20(2)    --------->ATHB12              <---------ATHB51     <---------YAB1                   --------->AHL20(1)              --------->ICU4    <---------AHL20(2)                  <---------AHL20(1)              <              <---------YAB1<---------CCA1(1)                       <---------AHL20(2)          -----            --------->YAB1 <---------ARR11(3)         ------>ZmHOX2a(1)                        ------          --------->AHL20(2)<---------RVE1(1)        --------->TOE2(3) <---------YAB1         -------        <----------DOF2    --------->ARR11(3) --------->YAB1--------->ZAT18              ----------->GT1   ttttttgtgtcttttaataattaaattcagatattttatgattggtgaccataatcctaaattgccctaatatatgattacatgtagactcttgtaaaaa  6521800                                                        <--------P                                                      <------MYB83      <---------TOE2(3)                                                     <---------TOE2(3) <-----------GT1                                                     --------->MYB59--------->YAB1                                                     --------->MYB46(2)--------->MYB52(1)                                            --------->WOX13(1)   ------>ZmHOX2a(1)--------->YAB1----- ---------YAB1                        <---------ANAC58<------MYB46(1)  --------->YAB1        -------- ------>GT1            ---------->DOF2<---------ANAC58--------->ANAC55(2)        --------->ICU4 ----- --->DAG2  --------->AHL20(2)         <---------ANAC46<---------ANAC55(2)      --------->WOX13(1) --->DOF2--------->At4g35610<---------WOX13(1)<-----------------AG <---------YAB1<---------ATHB12   gtaatattgtcaactaaataaaactaaaagattgatagtagggtgtcaatctaattaggtaagtttcctataataacgatgcaatcatgtactaagtcaa  6521900                                             --------->ANAC58                                         --------->ANAC58                                         --------->AtLEC2                                     --------->ARR11(3)                                --------->MYB52(1)                              --------->TOE2(2)     --------->MYB52(1)               <---------YAB1          --------->ATHB12    --------->TOE2(3)   <---------MYB52(2)         ---------->DOF2 ---->ANAC58               ------->GAMYB --------->ANAC58                   --------->AHL20(2) ->WRKY18(1)              --------->MYB46(3) --------->ANAC58           <------ZmHOX2a(1)   <-------- ---->ANAC58              <---------MYB111(2)--------->ANAC46--------->ZAT14<---------AHL20(2)-------   gccaagtctagatgatttgaattatctaacaacctaagtgatcatgcaagaaactaacaaaactatactaagcaggaattaaagaacatgagtgatgaaa  6522000  Previous    Next  AGI:  At2g15045.1    Description:  transposable element gene. similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT4G08860.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABE81233.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 6520776    to: 6521549    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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