Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <---------TOE2(3)                                                      <---------YAB1      --------->ICU4                          <---------At4g35610   <-----------------AGL2                     --------->ZAT2   ----------------->AGL2                     <---------ZAT2   <-----------------AGL3                     --------->At4g35610  ------>MYB83                             --------->SPL7          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ------>MYB46(1)                         ------>NtERF2----------->GT1 --------->ANAC46                        ----------->HVH21       <---------ZAT2                    <- --------->ANAC58                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------At4g35610 --------->ANAC58                       <---------ANAC46         --------->ZAT2 --------->ALFIN1----- ----HVH21                             <---------LBD16<---------TOE1(3) --------->CCA1(2)       -----   gaccagccatttttggtcttcagtctaaacagagacacaatcgcggacagcttgctatggttaacacagcttggatatagaggtgtctcagcatctacaa  6471800                                --------->ANAC55(2)                            <-----------TGA1                            <-----------HVH21     --------->ANAC46      --------->bZIP60(1)     --------->ANAC58      <---------bZIP60(1)                  --------->TOE2(3)     --------->ANAC58     ---------->ID1                  --------->TOE1(3) ---------DOF2        <---------ANAC58                    --------->YAB1                     -------- ---->ANAC58          <---------ANAC58                    --------->TOE2(3)                  <xxxxxxx ---->ANAC58       <----------DOF2--------->ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------>NtERF2   gctttgcaagcaactcgtcttctttcttgtcgtcacgttctgcaatctcgcccaattgaaccataacatcaaactcttcgtccaaatactatgcagcctg  6471900                                                   ----------->RAV1(1)            ----------->HVH21                                                  --------->AtMYB61              <-----------HVH21                                      <----------DOF2                           --------->ANAC46                                     <---------ANAC58 --------->ANAC46      <-----------GT1                            <---------WOX13(1)    <---------ALFIN1       <---------YAB1        ------                         ----------->HVH21       --------->MYB46(3)    <---------ICU4    ------>NtERF2                       <---------At4g35610  <----------DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                 <---------ICU4      <---------ANAC58--------->MYB46(3)--------->YAB1    --------->ABI4(1) --->RAV1(2)    <---------YAB1   <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->DEAR3(1) xxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ICU4 <---------ALFIN1   atacaactcaactacttcatcattccactgactgactttgctttcactttcaccaccagacaccaattctccatgatgataccagtcacaccgcctctta  6472000                                                                         <---------ICU4                                                                         --------->ATHB51                                                                         --------->ATHB12                                                                         --------->YAB1                                                                         <--------ATHB1                                                                         -------->ATHB1                                                                         <------------ATHB5                                                                        --------->ICU4                                                         ================================HOX2a_HOX2a                                                         <------ZmHOX2a(2)                                                   ----------->HVH21    <---------ATHB12                                              --------->TOE2(2)         <---------YAB1      ---------                                              --------->TOE2(3)       --------->WOX13(1)   <<<<<<<<<ARR1                                             ----------->RAV1(2)  --------->ANAC58         <---------ATHB12                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ANAC58         <<<<<<<<<ARR2                  <-----------HVH21     --------->ANAC46--------->ARR11(3)        <------ZmHOX2a(1)<- --->YAB1     ------>ZmHOX2a(1)   --------->MYB46(3)    <---------ARR11(3)    <---------AtLEC2<------   taagccttatccattcctcttgtcacaagatgatcaacaactacacaacctgagtgacgatctatgttacgacaatcattgcaaggacatacaatcatat  6472100                        --------->LBD16                       <---------ANAC55(2)                  --------->bZIP60(2)                  <---------ALFIN1                ----------->RAV1(1)              ------>NtERF2             --------->DEAR3(1)             --------->RAP2.3(3)            --------->ERF1            --------->RAP2.3(1)            <------NtERF2                                                <---------HSFB2a(2)            --------->ATERF1(1)                                          --------->HSFB2a(2)           <---------ATERF1(1)                                      <-----------RAV1(1)           --------->At4g35610                                    <----------DOF2           <---------At4g35610                                --------->At4g35610             -------          --------->DEAR3(1)                               <------ZmHOX2a(2)            ----------->GT1     ---------->DOF2  --------------->AtSPL3              <---------ARR14(2)          ----------->GT1 >YAB1    --------->RAP2.6(2)                            <------ZmHOX2a(1)     ---------------------- --------CCA1(2)<---------ALFIN1                --------->YAB1<---------At4g35610 ---------->DOF2   *TSS ---CCA1(2)--------->LBD16--------->SPL7  <---------ALFIN1--------->ARR14(2) ------------------------   catctcttaaagccgcagccacatcccgtacaaacttgatagcccctctctcataagtaggatcagctctttgttgcagaagtagaaagagagaaaaaaa  6472200                                                         --------->AHL20(2)                                                         --------->YAB1                                                      --------->YAB1                                                      <---------ICU4                                                     --------->ICU4                                                    --------->AHL20(2)                                                    <---------AHL20(1)                                                    --------->AHL20(1)                                                    <---------AHL20(2)                                                  --------->ICU4                                                  <---------YAB1                                                --------->YAB1                                               <---------YAB1                                               --------->ICU4                                              <---------AHL20(1)                                              --------->AHL20(2)                                              <---------AHL20(2)                                              --------->AHL20(1)                                             <---------ICU4                                             --------->YAB1            ------>MYB46(1)                                            <---------YAB1          <---------ANAC58                                            --------->ICU4          ----------->RAV1(2)                                          --------->YAB1 <---------AHL20(2)             --------->ATHB12                                         <---------AHL20(2)     <---------ANAC58       <---------ATHB12                                         <---------YAB1 <---------YAB1 ------>MYB83--------->MYB46(3)                                         --------->AHL20(2)  <-----------GT1       ------------>CBF                                        <---------AHL20(1)<---------AHL20(2)      --------->ANAC58                                        --------->AHL20(1)<---------AHL20(1)      --------->ANAC58     --------->ZAT14                    --------->AHL20(2)--------->AHL20(1)      <xxxxxxxxxxxxxxxxsmallRNA(s)  ----------->GT1                   <------ZmHOX2a(1)<---------YAB1 <---------ANAC58  --------->ARR14(2) --->DOF2                         <---------TOE2(3)--------->YAB1  -------->P  <-------TEIL     ----- -->ANAC81   --------->ANAC46    --------->MYB52(1)<---------ICU4------>ZmHOX2a(1)--------->ANAC46 >ANAC81    --------->LBD16    --------->TOE2(2)<---------ICU4  <---------ANAC58 ------->TEIL  ------   gaagaagtaaactccccaaaacccttactgaaacctaaggaatataattataattataattatattccttacctgccaagatgcacccaatccttggcca  6472300                                                                                         --------->ANAC58                                                                                    --------->WOX13(1)                                                 <---------------AGL15           --------->ANAC58                                                 --------------->AGL15           --------->ANAC46                          --------->TOE2(3)     ==========================================MADS_MADS                       <-----------GT1          ----------------->AG       --------->LBD16 <xxxxxxxxx               --------->At5g28300              ----------------->AGL1     ------>ZmHOX2a(1)              ----------->GT1          --------->ANAC58                  <---------LBD16 --------->ANAC46              ------->GAMYB            --------->ANAC58              --------->GLK1(2)   --------->ANAC58              --------->TOE2(3)        --------->ANAC46              --------->ARR14(2)--------->YAB1              --------->TOE1(3)     --------->TOE2(3)               <---------GLK1(2) <---------ATHB12        --------->At4g35610<----------DOF2----------->RAV1(1)   ---------->DOF2  --------->ANAC58 ->NtERF2  --------->MYB52(1)       --------->TOE1(3)      ---------->DOF2--------------->AGL15 --->RAP2.6(2)--------->ANAC46      --------->TOE2(2)   <---------ANAC46 ----------->RAV1(2)   ccattctatgtgctaaccgtaatataaacctttagtaacctaagcaacataccatattgtgtaaagaaaagaatctcctgaataagcaatcacacaataa  6472400                                              --------->ANAC58                                              --------->ANAC46                                              --------->ANAC58                                            ---------->DOF2                                 --------->ANAC58                                 --------->ANAC46                                 --------->ANAC58                                 --------->ANAC55(1)                --------->AHL20(1)         --------->YAB1                <---------AHL20(2)        <---------ATHB12          --------->ANAC46                --------->AHL20(2)      --------->WOX13(1)       <-------TEIL                <---------AHL20(1)    <---------ATHB12       --------------->AtSPL8     <---------TOE1(2)               <---------AHL20(2)--------->ANAC55(2)         <---------------AtSPL8    <-----------RAV1(2)               --------->AHL20(2)--------->YAB1       <---------TOE1(3)          <---------YAB1 xxxxxxxxxxxxxxsmallRNA(si3)    <---------TOE2(3)     <---------TOE2(3)        --------->YAB1   gtagacaacattcacaaataaattcaaacttataaacgtaatcaatcaaagcaattcaggttttaagtacatgctactcgattatagtagcaggttttaa  6472500                --------->ARR14(2)                --------->ARR11(3)                                                       <---------ZAT6                --------->GLK1(2)                                                        ----------->GT1                <---------ARR11(3)                                                     <---------ZAT14                <---------ARR14(2)                       <-----------GT1               <-------TEIL -               <---------GLK1(2)                        <---------ATHB12               --------->ZAT14           ---------->DOF2                  ----------->RAV1(1)  --------->YAB1    <---------------AtSPL3     ------->TEIL                   --------->ANAC46  --------->ANAC46             <---------------AtSPL8   acaaatgtaactcaaaagaatcttcaatataaacaaacacagaatacaacatttacaaatcactctatcaaaacaattcagtagataagtacagttacta  6472600  <---------YAB1--------->AHL20(2)                                --------->ANAC58 <---------AHL20(1)                                               --------->ANAC58 --------->AHL20(1)              ---------->DOF2             <xxxxxxxxxxxxxxxxsmallRNA(i) <---------AHL20(2)  --------->AHL20(2)                    --------->ANAC46 --------->AHL20(2) --------->AHL20(2)                   --------->YAB1 -------->AHL20(2)  <---------AHL20(2)                --------->WOX13(1)                            <   gattatattagtatgttttaaaataaataaaactgaaaagaattcttctaagtaaacaatcacagaacaagcagacaacattcacaaataactcaaactt  6472700  Previous    Next  AGI:  At2g14980.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-247 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element) Range:  from: 6468754    to: 6472200    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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