Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <------ZmHOX2a(1)                                               <---------TOE1(2)                                              <---------HSFB2a(2)                                              ------>ZmHOX2a(1)         <-------MYC3                        --------->TOE2(2)         ------->MYC3                       ------>ZmHOX2a(2)        --------->ANAC55(2)                <------ZmHOX2a(2)        <---------ANAC55(1)                =============HOX2a_HOX2a         ----------->HVH21     --------->ARR14(2)       <----------DOF2--------->TOE1(2)            <---------At4g35610     <---------ARR14(2) <---------ZAT14   <---------ARR11(3)         <---------ANAC46      --------->ZAT6   --------->ANAC46     --------->ZAT14   --------->ARR11(3)         <---------REM1(1)   ----------->RAV1(1) ---------->RAV1(1)  ------>MYB83         <---------ARR14(2)    <---------bZIP60(2)      <xxxxxxxxxxx --------ALFIN1      ------>MYB46(1)      --------->ARR14(2) ----------->HVH21 <---------bZIP60(2) ----->ID1         --------->DEAR3(1)    --------->RVE1(1) --------->YAB1 --------->At4g35610xxxxxxxx ---->PCF2        --------->DEAR3(2)  ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ALFIN1   cccaccagaaacgtgttagaaccgactgaactcttttacaaaaagatcctaggagtttgaagcatgacatggtgtaagatgacatggttgccaacactga  6359900                       <------NtERF2                      --------->LBD16                      <------NtERF2                      <---------At4g35610                      ------>NtERF2                     ----------->RAV1(1)                     --------->RRTF1(3)                     --------->RAP2.3(2)                     --------->RRTF1(2)                     --------->DEAR3(1)                     <---------ANAC46                     --------->RAP2.3(3)                    --------->DEAR4(2)                 ------>ZmHOX2a(2)                      <------                    --------->RAP2.3(1)               --------->GLK1(1)          <-------GAMYB------>ZmHOX2a(1)                    --------->ATERF1(1)               <------ZmHOX2a(2)         <------MYB46(1)    <-                    --------->RRTF1(1)                <---------GLK1(1)         <------MYB83------>ZmHOX2a(2)                    <------NtERF2                    <---------ARR11(3)        <---------AtMYB61   <-                    --------->RAP2.6(1)              --------->ARR11(3)    <--------ATHB1 <---------GLK1(2)                   <---------ATERF1(1)               --------->ARR14(2)    --------->ATHB12<------ZmHOX2a(2)                  --------->ANAC46                   <---------ARR14(2)   --------->ICU4  <---------ARR14(2)                <---------ANAC58             <---------ZAT2               <---------ATHB12--------->ARR11(3)                <---------ANAC58             --------->At4g35610       <---------WRKY12   <---------ARR11(3)             <----------DOF2                 --------->ZAT2            <---------WRKY38(1)--------->ARR14(2)   <---------AtLEC2------>NtERF2             <---------At4g35610      --------->WRKY18(1)--------->RVE1(1) xxxxxxxxxxxxsmallRNA(fl3)                   ----------->RAV1(2)     --------->At5g28300----------->ARR10 xxxxxxxxxxxxxxx>smallRNA(si3)             <-----------RAV1(2)       <-----------HVH21---------->DOF2   ttttagcatggtagtctttcgcgccgcagataagaatttagaagtccagctgagggatctctgtcttatacggtcaatgatttggttgaaaagatccttt  6360000                                         <---------ARR14(2)                                   <-----------GT1         <---------ALFIN1       <----------TaMYB80                 <---------RVE1(1)      <---------ZAT18         <---------CCA1(1)                   <---------ARR11(3)       <---------ZAT2      --------->ZAT18         <---------RVE1(1)     ------>ZmHOX2a(1)              <---------ANAC58 ----DOF2--------->ANAC46    <---------ARR11(3)     <----------DOF2<---------CCA1(1)       --------->At4g35610 --------ANAC58            <---------TOE1(2) --------->ZAT14      --------->ARR11(3)       <---------At4g35610 --------ANAC58   --------->ANAC55(2)    --------->ARR14(2)       <---------GLK1(2)<---------ANAC58 <   ttcttgtgtccacacatttcatgtaatccaaggtattttcccagttctgtagtcctttgtataccaaagattttttgagcatttgtcttggtaagctcag  6360100                                                <---------HSFB2a(2)                                       <---------YAB1             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->HSFB2a(2)      <---------ANAC58               <-----------GT1             ----------->TGA1      <---------ANAC46               --------->YAB1            <---------ICU4            xxxxxxxxxxxx      <---------ANAC58      <------MYB46(1)     <---------HSFC1(1)             --------->YAB1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->HSFC1(1)             <---------ICU4 ---------ARR14(2)          <------MYB83--------->ATHB12    --------->YAB1--------->ARR14(2)     <---   aggttttggcttaaaatgtgatggctgatttggttttatttatcatttgtctagaaacagaatcatactgacgaagaatactcatgagaactgagaatgc  6360200                                                                                                    <                                                                                                    -                                                                                          <---------HSFB2a(1)                                                                                          --------->HSFC1(2)                                                                                          <---------HSFC1(2)                                                      --------->YAB1                      --------->HSFB2a(1)                                                      --------->ATHB12                   --------->ARR11(3)                                                      <---------ICU4                     --------->GLK1(2)                                        ----------->RAV1(1) <---------At4g35610          <---------ARR14(2)                                       <----------ID1<---------ATHB12                    --------->ARR14(2)      ----------->HVH21        <---------At4g35610   --------->ICU4           <---------ICU4      --- xxxx>smallRNA(i)              --------->At4g35610 --------->WOX13(1)   <---------ALFIN1 <-----------ARR10 -------DOF2               <-----------HVH21   ----------->GT1 <-----------HVH21        <---------GLK1(2)   tttggagtctgacctgcagaaaaacattgtgtcatctgtaaacaacaaatagttaatcatggggctgtcatttcccacactaattccatagaatcttcct  6360300        <----------DOF2    <---------ZAT18 --------->ZAT2 <---------ZAT2 <---------At4g35610 --------->At4g35610                                         --------->YAB1 -----------RAV1(1)            --------->ANAC46           <---------HSFB2a(2) ----->ZmHOX2a(1)   --------->ZAT6   --------->YAB1       --------->HSFB2a(2) -------->RAV1(2) <-----------GT1 *TSS            <----------DOF2                           <--------   tcctgctgcgctttgctaaataacacttccaatactccatcataaaaatcaactttctctctagaataaatgagaagtcttacattttcgttttctttac  6360400                                                                  <---------ARR14(2)                                                             ----------->RAV1(1)                                                          ------>MYB83                                                          ------>MYB46(1)                                                        <---------MYB46(2)                                              --------->ARR11(3)  --------->ARR14(2)                                              <---------ARR11(3)<---------ARR11(3)             <-----                                      <-----------GT1   --------->MYB46(3)                     ------                                 <---------CCA1(1)      <---------MYB111(1)                   -------         ------------>CBF        <---------RVE1(1)      <---------MYB59                       -------   <---------GLK1(2)            --------->ARR11(3)   <-----------GT1                          <------ --DOF2 ------>ZmHOX2a(1)       <---------ARR11(3)--------------->AtSPL8              ----------->GT1   acttagattcctacaattcatccctcttccatgagatattttacttaaaatctttgtaccaaacaacatattcggttttggaccagtaaggctaatacct  6360500                                                        --------->ANAC55(1)   <---------MYB52(1)                           <------MYB83   --------->DOF5.7(2)                          <------MYB46(1)  --------->TOE1(3)                             ----------->GT1  --------->TOE2(3)                            --------->MYB59 ----------->GT1                 <---------ANAC46       --------->ANAC46 ----MYB59                       <---------ANAC58       <---------ANAC55(2) --->TOE2(3)                     <---------ANAC58       --------->ANAC55(2) ---------->AGL1    <---------AHL20(2)       <---------MYB52(1)                             --------- ---------->AG     --------->AHL20(2)       <-------GAMYB  <-----------GT1     --------->AHL20(2) xxx ---ANAC55(2)      <---------AHL20(2)      <---------MYB46(3)                  <---------AHL20(2)<---   aaaacgttaatcccctgtttttttaatagaaatttgcgtctatgtctgttaggttaacacataaccatttttgtttttcaaaaaattgttttgatcatat  6360600                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              <---------TOE1(3)                                                             <-----------RAV1(2)                                                --------->ZAT14                                    <-         --------->YAB1                         <---------ZAT14                      ----------->GT1< >YAB1<---------CCA1(2)          --------->MYB46(3)    <---------ANAC58              <------MYB83<--- xxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---------->DOF2     <---------ANAC46              <------MYB46(1)< --------GT1                   ----------->RAV1(1)     <---------ANAC58  <------ZmHOX2a(1)--------->ICU4   tactatgcatatcatcgtctcaaaaattgttggcaacaaaagacagtcagagtagtatcgtgctcaggtttattaggacttagagggaggtcaaaattgg  6360700               <---------AHL20(2)              <XXXXXXXXXXXXXXXXXXXXMIR857             <---------AHL20(2)            --------->AHL20(1)          <---------ARR11(3)                                                      <---------AHL20(2)          --------->AHL20(1)                   <---------AHL20(2)                <XXXXXXXXXXXXXXXXXXX          <---------AHL20(1)                   --------->AHL20(2)               <---------AHL20(2)  <----------DOF2                            --------->YAB1                    --------->AHL20(1) -----NtERF2<---------AHL20(1)         ----------->GT1                         <---------AHL20(1) ---------ANAC58                    <-------TEIL--------->AHL20(2)           <---------AHL20(1) ------RAP2.6(2)               <---------AHL20(2)                            --------->AHL20(1)   <-- ---------ANAC58               --------->AHL20(2)                            <---------ARR11(3)   ---   tggcctttccaatatatattttttgtatacaaaataaatacatgtaaaaataattttggaacgatagaagcctttccaatatatattttttgtatacaaa  6360800  Previous    Next  AGI:  At2g14796.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.7e-05 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus) Range:  from: 6358241    to: 6360334    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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