Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->YAB1                                                                                         <---------ICU4                                                                                        <---------YAB1                                                                                      <---------ICU4    <---------ARR11(3)                        <---------ANAC58                        --------->YAB1    --------->ARR11(3)                        <---------ANAC58                       --------->ICU4   --------->YAB1                       <---------AHL20(2)    <---------ARR11(3)     <---------ATHB51  <---------YAB1                       <---------AHL20(2)     --------->ARR11(3)     <---------AHL20(2) -------->YAB1     <---------TOE2(3)   --------->AHL20(2)    --------->YAB1          --------->AHL20(2) -------DOF2      ---------->DOF2 <---------AHL20(2) >>>>>>>>>MYB98          <-----------GT1 -----GT1      <----------DOF2 --------->TOE2(3)   <-----------GT1   --------->ZAT6--------->YAB1----   ttttatgatattgtgttctttaaagtattcaattcttaaattttaatttcgttttaacatatatgatattgtcactaatttacaaaaataattatacctg  6162500                                                                                 --------->ARR11(3)                                                                                 --------->AHL20(1)                                            <---------AHL20(2)                   <---------AHL20(1)                                           --------->AHL20(2)                    --------->AHL20(2)                                         --------->TOE2(3)                       <---------ARR11(3)            --------->TOE2(3)           --------->YAB1                  ----------->GT1           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         ----------->GT1              <           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     ---------->DOF2      ------>MYB83     <-------TEIL                       --------->ATHB12       <-------GAMYB     <---------AHL20(2)--   <---------GLK1(2)                    <--------HAHB4         --------->At4g35610        ------>MYB46(1)   <---------ARR14(2)                   -------->ATHB1         <---------At4g35610   <-----------GT1<   --------->ARR14(2)                   <---------ICU4    ----------->HVH21     --------->AHL20(2) <- xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ICU4 --------->AHL20(2)<----------ID1  <---------MYB59 ------->HVH21  --------->At4g35610   --------->GLK1(2)--------->AHL20(1)     --------->AHL20(2)   --   taacagattcagaacattagcagaatattggttcttggagaatcattaaatccaaaatatatgacagttgagaaaggaaaaaatatattaccaacttcga  6162600                                                                <---------------AGL15                                                                <----------DOF2             ----------->GT1                                    --------------->AGL15               < ------MYB83 <---------MYB46(3)                        --------->AHL20(2)                          -- ------->MYB59    <---------ANAC55(2)                ----------->GT1                               <- ------MYB46(1)   --------->ANAC55(2)  <---------AHL20(1)       <---------DAG2                     <- --------------AtSPL8                  --------->ARR11(3)    <-----------GT1              xxxxxxxxxxx ------------->AtSPL8               ----------->GT1---------->DOF2                  <---------ZAT14--   tttggtactccaaattggttacataatttgtaatcgtctagtatattgtgtagcaaagtaaatatactttatgtagaaaatgcgagaacagagcaagttg  6162700               <---------MYB59             ------>MYB83                <---------GLK1(2)             ------>MYB46(1)             --------->ARR11(3)             -------->P   ========================HOX2a_HOX2a            --------->MYB55(1)           <---------ARR14(2)           <---------MYB111(2)           <---------ARR11(3)           <---------MYB55(2)            --------->ARR14(2)           <---------MYB46(2)            --------->AGP1           --------->MYB46(3)          ----------->ARR10           <---------MYB111(1)      --------->MYB52(1)    <-----------GT1       ------>ZmHOX2a(1)  ------>ZmHOX2a(1)                                  <---- ---------AHL20(2)        =======================HOX2a_HOX2a                                    ----- ------->ARR11(3)        --------->TOE1(3) ------>ZmHOX2a(2)                                --------- --------AHL20(1)        --------->TOE2(3)<------ZmHOX2a(2)                        ------------>CBF --------ARR11(3)------>MYB46(1)  --------->MYB46(3)                              <-----------GT1 xxxxxxxxxxxx>smallRNA(se3)     --------->MYB52(1)                            <----------DOF2 <------ ------->AHL20(1)------>MYB83 <---------MYB52(2)    <---------ATHB12       <---------AHL20(2)--------   atatatttactcacctaccaaatatttccttaactaacaaacagatcctctctaatcaagtatggactctattacatttactttcaacaattctataaaa  6162800                      ------------>CBF                     --------->ANAC58            --------->YAB1      ----------->HVH21 -----ARR11(3)       --------->ANAC58                     *TSS                                    <-- ---->ARR11(3)      --------->WOX13(1)                 ----------->GT1                         ------ -->TBP <---------MYB52(1)      <---------YAB1         <----------ID1                       <-------- ---AHL20(2)--------->TOE1(3) <---------ICU4          ----------->GT1                ------>ZmHOX2a(2) ->AHL20(2) --------->TOE2(3) --------->YAB1  <------------CBF                     <xxxxxxxxxxxxxxxxx   tcttataccagttatcttaaatcactcaatactcatgacagtctagagtattgaaatgggaaaaaaaaacagccatgctctgtttgatctaatttcacct  6162900                                <-----------GT1                       ------>ZmHOX2a(2)                                --------->MYB52(1)                    <---------MYB59              <- -------ALFIN1    --------->ANAC58                                  ------->TEIL      <---------ANAC46 --->AtMYB61      --------->ANAC58  --------->At4g35610             <---------AGP1    <---------ANAC55(2) ---GT1           <---------ANAC55(2)                    ---------->CDC5              --------->ANAC55(2) xxxxxxsmallRNA(se3)     <-----------HVH21 ---------->DOF2 --------->At4g35610        <---------ANAC55(1)   ccaccctcagagaagagaccacgtataggtcaaataacagcttcacaaagccaacttactcagcgtaatggatctaattctaatggttatgtgtctatta  6163000                            --------->ZAT6                         --------->GLK1(1)                         <---------GLK1(1)                                               <---------ARR11(3)                        <---------ARR11(3)                 --------->ARR14(2)   <---------YAB1 -----ZmHOX2a(2)        --------->ARR11(3) <---------At4g35610               --------->ICU4     <----   gatcagttttcaatacagttttcagagatatcactaatttgattcagcaacttctatacagtattcacatggtactgtcattactatacaatatccaact  6163100                                                                                                    -                                                                                                 ----                                                                                                 ----                                                                                               ------                                                                          <-------TEIL<------ZmHOX2a(2)   --------->GLK1(2)                                                  <---------TOE2(2)   <------ZmHOX2a(1)  <---------GLK1(2)                          <---------ANAC46         <---------TOE1(2)<xxxxxxxxxxxxx  --------->ARR14(2)                      <---------MYB52(1)       --------->ANAC46  --------->ARR11(3)  <---------ARR14(2) <---------GLK1(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ---------->DOF2<---- ------DOF2  <----------DOF2       <-----------HVH21    --------------------->WRI1   <---------ARR11(3)   ttcagattctatctgctttacaagattagcaaatggttgtcacagttacttagaatgtgtttgaactactcgcaggttcatttgaaagatcaggacttac  6163200                                                                       <---------ARR11(3)                                                                       --------->ARR14(2)                                                                       <---------ARR11(1)                                                                       <---------ARR14(2)                                                                      <---------ARR14(1)                                                                      ------>MYB83                                                                      ------>MYB46(1)                                                                      <---------CCA1(2)                                                                 ------>MYB46(1)                                                                 ------>MYB83                                                               --------->AtMYB61                                                               <---------MYB46(2)                                                               --------->MYB46(3)                                                              --------->ANAC46  <---------WOX13(1)                                      ------>ZmHOX2a(2) -------->ATHB12                   <---------GLK1(2)     <---------At4g35610 ----------->AGL15                <---------At4g35610    --------->bZIP60(1)          --------->TOE2(3) ----->TOE2(3)                    --------->At4g35610    --------->At4g35610         --------->At4g35610 -->P                --------->At4g35610                 <---------bZIP60(1)       <---------ALFIN1 xxxxxxxxxxsmallRNA(fl3)          <---------ZAT2        <---------ARR11(3)       <-----------HVH21 -------------AGL1   <---------At4g35610                --------->ARR11(3)<----------DOF2           <   ctcgattggcagaaaaaatttgcatcagcctaagacagcttctactattccatttagtgatctcaccaaaccaaatctttaggcatcacctcaaaattta  6163300                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         --------->ARR14(2)               --------->At4g35610         ----------->GT1               <---------At4g35610       <--------P              --------->ANAC46        <---------TOE2(2)                                             <              --------->ANAC58  <---------ZAT18                                                  <---          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 -----          <---------bZIP60(1)   <---------ZAT14           <---------ARR11(3)                 <-------       ----------->HVH21 <---------ARR14(2)--------->MYB52(2)<----------DOF2               --------->ANAC55(2)  ------->TEIL--------->ANAC58  --------->ZAT14           --------->ARR11(3)               <---------ANAC55(2) -------TEIL <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------CCA1(2)                 ----------   gatgcatcgatgacaccagctactgcatatacagtgaacacaggttagttattctatatatatcttttagttctccaaactactctgtctattatgtaat  6163400  Previous    Next  AGI:  At2g14470.1    Description:  transposable element gene. pseudogene, similar to putative helicase, low similarity to SP|Q9UUA2 DNA repair and recombination protein pif1, mitochondrial precursor {Schizosaccharomyces pombe}; blastp match of 39% identity and 1.1e-272 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)} Range:  from: 6162858    to: 6168893    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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