Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->ANAC46           ------>ZmHOX2a(1)             <---------GLK1(1)                                         <-           ============================HOX2a_HOX2a                                            <------           ===========================HOX2a_HOX2a      ------->GAMYB                       <------NtERF2      --------->At4g35610       ------>ZmHOX2a(2)     --------->ANAC58                    <---------ATERF1(1)      <---------ZAT2           <------ZmHOX2a(2)      --------->ANAC46                   ---------->CDC5      --------->ZAT2          <---------ARR11(3)<-------PIF5                             <---------DEAR3(1)      <---------At4g35610     --------->ARR11(3)------->PIF5                           <---------ANAC58 ---------AtSPL8    ===================HOX2a_HOX2a    --------->ANAC58        <---------ZAT6 ------>NtERF2 ---------AtSPL3    ------>ZmHOX2a(1)    --------->GLK1(1)       <---------ZAT18  --------->MYB52(2)< -------->AtSPL8    ==================HOX2a_HOX2a   --------->MYB52(1)  ------>NtERF2  <---------ANAC58   tacttctcagctcctaaatttcctcgttttgagatcgttcttgatatccacgtccaacggcatttagaccgctcggccttgtgttatttgctcggcgcat  6115700                                        --------->TOE1(1)                                       <---------LBD16                                   <---------WRKY18(1)                                  --------->WRKY38(1)                                  ----------->HVH21                                  --------->WRKY12                                 <---------WOX13(1)        --------->GLK1(2)       <-------GAMYB        <---------ARR11(1)      <---------ANAC58        --------->ARR14(2)      <---------ANAC58        <---------ARR14(2)     <------MYB83<---------TOE1(2)       <---------ARR14(1)      <------MYB46(1)     <---------ANAC58          <---------MYB46(3)             <---------ZAT6     <---------ANAC58          --------->MYB55(2)         <---------MYB52(1) <---------ANAC58              --------->MYB52(2)  --------->REM1(2) <-------GAMYB                <---------AtMYB61  --------->LBD16 --------->ATERF1(1)       <-----------RAV1(1)  <---------ANAC46 <---------ANAC58          <---------MYB46(3)   <---------ANAC55(1)                              ---- --------ANAC46          <---------At4g35610    <---------ANAC58                               ------ ---AtLEC2  ------>ZmHOX2a(1)<---------MYB52(1) <---------ANAC58                              <------ZmHOX2a(2) ---------MYB46(3)       --------->At4g35610   <-------TEIL --------->MYB52(2)               <-------   ggcgcttgcgaatccttccgaatgttgagctgttggttgacctcggaggtccgtgtaagcgttagtgagaacgtcgaacagttcgacattctttcgatcc  6115800                                                        <-----------RAV1(1)                                             ----------->RAV1(2)                                             =======================RAV                                      ------>ZmHOX2a(1)<---------ANAC58                                      <---------HSFB2a(2)                                      --------->LBD16  <---------ANAC58      <------NtERF2                        --------->ANAC55(2)  --------->At4g35610           <---------ANAC58                        <---------ANAC55(2)  <---------At4g35610     <---------ZAT2                        --------->ANAC58  <------ZmHOX2a(2)          --------->ZAT2                        --------->ANAC58 <---------ARR11(3)          <---------At4g35610            ------>NtERF2             --------->HSFB2a(2)      <-----------HVH21------>ZmHOX2a(1) -->ZmHOX2a(1)        <-----------GT1<---------LBD16  <---------ZAT2 --------->At4g35610 ----->RAV1(2)   <---------GLK1(2)  ----------->RAV1(2)<---------ANAC46    <---------ANAC58       --- --ARR14(2)--------->ANAC46         ================================RAV--------->ALFIN1         -----   tgagcttgaatttgcgccagaatgttacgcatcaatgctcctggatcatctggccttgctggtggagtcagagctgggcgtccttccatcccttgtactc  6115900                                <---------ANAC58                            <-------GAMYB                           --------->ALFIN1                         <---------ANAC58                         <---------ANAC58                         <---------ANAC46                       <------MYB46(1)                       <------MYB83                      <---------AtMYB61                      <---------DEAR3(1)                                                  <---------At4g35610                    <-------GAMYB         --------->MYB52(2)                              <---------ZAT2                   <---------DEAR3(1)    <-------TEIL                             <----------DOF2                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------WRKY18(1) <---------ANAC58      <                  <------NtERF2 <---------ANAC58   --------->ANAC46           <---------ANAC46      -                 <---------ORA47(2)   <---------DEAR3(2) ----------->HVH21    <---------ANAC58      =              <-----------HVH21 <---------ANAC46 <---------ALFIN1        --------->MYB52(2)         =           <---------TOE1(2)--------->REM1(2)   <---------REM1(2)       <-------TEIL      --------->At4g35610 --->ZmHOX2a(1) <---------DEAR3(1)  --------->ALFIN1    <---------WOX13(1)<-----------HVH21       --- ------>RAV1(2)<---------ORA47(1) --------->ALFIN1<---------LBD16  ------>ZmHOX2a(2)      --------->ZAT2   ctggctccaatcccacggtcggcgttggtgtgttgagtgtgggttcgttctccacgggattgacctcgatcgggttcgtcgcgtctttgccctgctcacc  6116000                <------NtERF2               ------>NtERF2              <---------DEAR3(1)             --------->ATERF1(1)             <------NtERF2            <---------ATERF1(1)            <---------RRTF1(1)            ------>NtERF2            <---------RAP2.3(1)            <---------DEAR4(2)      <---------ANAC46            <---------ERF1 ------>ZmHOX2a(2)           <---------RAP2.3(2)      <---------ANAC58           <---------O2   <------ZmHOX2a(2)           <---------DEAR3(1)       <---------ANAC58           --------->O2  <---------ARR11(3)          --------->ATERF1(1) <-----------HVH21         <---------ATERF1(1) ------>ZmHOX2a(1)                                            *TSS        ----------->HVH21--------->ARR14(2)                 --------->At5g28300          ============ -----------RAV1(1)      --------->ARR11(3)                 <-----------HVH21            ------>ZmHOX2a(1) ----->ZmHOX2a(1)        <---------ARR14(2)             <---------ALFIN1           <------NtERF2<---- =================================HOX2a_HOX2a<---------HSFB2a(2)                 --------->ANAC46   - ================================HOX2a_HOX2a --------->HSFB2a(2)          <-----------GT1============ -------->RAV1(2)   <---------ZAT2<xxxxxxxxxxxxxxxxsmallRNA(i)   <----------DOF2<---------LBD16 -----   tcctgttggagcgacggcggcatgctggatcctgtctggggtgtcttccacaaactccccacggtcactttcattttcacttcgcggcatccttccttct  6116100                                                                 <------MYB46(1)                                                                 <------MYB83                                                        <------NtERF2                                                       ------>NtERF2                                                      --------->ANAC58                                                      --------->ANAC58                                                      <------NtERF2                                                     --------->ZAT18                                                     <---------ZAT18                                                     ------>NtERF2                                                    <---------ANAC58                                                    <---------ANAC46                                               ==========================RAV                                               --------->ZAT2   <---------AtMYB61            ---------->ID1                     ----------->RAV1(2) <---------ANAC46        <---------ANAC58                      xxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------ANAC58                      xxxxxxxxxxxxxxxx>smallRNA(le3)    ------>ZmHOX2a(2)                         xxxxxxxxxxxxxxxx>smallRNA(se3)   <------ZmHOX2a(2)                          ------>MYB83 <------------CBF  --------->AGP1                              ------>MYB46(1)<-----------RAV1(1)  <---------AGP1                             xxxxxxxxxxxxxxxx>smallRNA(s)  --------->ARR14(2)                         xxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------ARR11(3)                         xxxxxxxxxxxxxxxxx>smallRNA(le3)  <-----------ARR10                          xxxxxxxxxxxxxxx>smallRNA(le3)  --------->ARR14(3)                         xxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ARR14(3)                         xxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ARR11(3)                         <---------ALFIN1<---------MYB46(3)  <---------ARR14(2)                        xxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------CCA1(2)                         xxxxxxxxxxxxxxx>smallRNA(si3)       ------->TEIL =========HOX2a_HOX2a                      xxxxxxxxxxxxxxxx>smallRNA(le3)     ------>MYB83 -----HSFB2a(2)                   <---------AtMYB61 <---------ANAC58          ------>MYB46(1) ---------->ARR10             <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ARR14(2) ==========HOX2a_HOX2a        <---------ANAC58-------->P------------>CBF <-----------GT1  ---------->DOF2 ---->HSFB2a(2)           <----------DOF2  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------MYB59   cgcagatcttccttggccttctcttcttcttttcttgtggtagacccctacctggcgcgccaattgttggtgtataaaccgaacctctaaaccaaagaag  6116200                                <---------YAB1                          <---------YAB1                      <----------DOF2                     ------>ZmHOX2a(2)                   <---------ARR14(3)                   --------->ARR11(3)                   --------->ARR14(3)                   <---------AGP1                   <---------ARR11(3)          <---------MYB46(3)                 ----------->ARR10           ------>NtERF2       ------->TEIL<---------ARR14(2)      <---------RAP2.6(2)                  <---------GLK1(1)    <---------bZIP60(2)<---------YAB1    <---------ARR14(2)           ------->GAMYB             -----    <---------ANAC58<------ZmHOX2a(2)    --------->ARR14(2)       --------->MYB46(3)           ------    <---------ANAC58<---------RVE1(1)--------->ZAT14            --------->HSFB2a(2)     ------>ZmHOX2a(2) ----------->HVH21 --------->ARR14(2)<---------ZAT14            <---------HSFB2a(2)    --------->GLK1(1)   gaaatgacgagcctgaaggaagatctttattaatatcactgaagttcggccgtttacagagtatttctacaaccgagattagatttctgatctcttaaca  6116300                                                                             <---------GLK1(1)                                                                             --------->GLK1(1)  <<<<<                                                                <----------DOF2               -------                                                                <---------DAG2    --------->At4g35610                                                     <---------HSFB2a(1)    <---------ARR14(2)------>ZmHOX2a(1)                                                     <---------HSFC1(2) --------->ZAT14  <----------DOF2                   --------->ICU4                    --------->HSFC1(2) <---------ZAT14  ------>ZmHOX2a(1)              --------->ANAC58                       --------->HSFB2a(1)<---------At4g35610 --------- ---->TOE2(3) --------->ANAC46            --------->YAB1       <---------ANAC58   <---------At4g35610 --->YAB1     --------->ANAC58 <---------YAB1   --------->YAB1 <---------ANAC58 <-----------RAV1(2)   taaatacaaacttcacaagtcaaaattagacttatgtttctgaatcagaatgagaagtttctattgcttttctctgcagatttcaggtgtcctttcctga  6116400                                                                                        ----------->HVH21                                                                                  <---------ZAT2                                                                                  --------->At4g35610                                                                                  <---------At4g35610                                                                                  --------->ZAT2                                                                               <---------ZAT2                                                                       ----------->RAV1(2)                                                                       <---------At4g35610                                                      --------->HSFB2a(2)      --------->At4g35610                                                      --------------->AGL15    <---------At4g35610   <----------DOF2                                    <---------HSFB2a(2)----------->HVH21 <<GRF7           --------->YAB1                     <-----------------AGL1    --------->ZAT2 ---->HVH21      <---------YAB1  --------->GLK1(2)   <-----------------AG------>ZmHOX2a(1) -->RAV1(2)    --------->YAB1<------ZmHOX2a(1)  <-----------GT1        --------->At4g35610    -------   cattcctttgtcagtatttataatactgcaaggacaatctatagtacaattttcttctcgatttgggactctctcctgaccagcagctccctgaaggtgg  6116500                                        =====================HOX2a_HOX2a                                       <------ZmHOX2a(2)                     <---------ANAC58  ======================HOX2a_HOX2a                     <---------ANAC58 --------->ARR14(2)                  <----------DOF2     --------->ARR11(3)                <----------DOF2       <-----------ARR10                     <-----------RAV1(1)        --------->ALFIN1              <---------ARR14(2)             --------->YAB1        <-----------RAV1(1)           <---------ARR11(3)            <---------ATHB12           <-----     <-----------RAV1(1)            ----------->ARR10 ------>ZmHOX2a(1)<---------YAB1          <-----     <---------MYB46(3)  <----------DOF2------>ZmHOX2a(2)         --------->WOX13(1)<----------DOF2 -->ALFIN1--------->ALFIN1   <-----------GT1     <----------DOF2----------------->AGL1 <-----------GT1   gcttcgtctggtgttgggctctttcgtctttaaacgggccgatcttctcttctttcctccctcgttgccaattacgatatgttgggctttaaccatgttg  6116600  Previous    Next  AGI:  At2g14380.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 1.6e-123 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 6112654    to: 6116090    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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