Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------At4g35610                         --------->At4g35610                    ----------->HVH21                 ------->MYC3                 <-------MYC3                                                                     <--   <---------ANAC55(2) <-----------RAV1(2)                                                       ---- --------->AHL20(2)<-----------HVH21                                                   <-----------HVH21   aaattacttaaatcaaacatgtgtcacagatgaactagttgaacatttctaactaatacgagaactaatactcaaacaaaacaaaaatgtgtcatagaga  6088800                      <---------TOE1(3)                      <---------TOE2(3)                     --------->MYB52(1)                     <-----------GT1                                       <---------ALFIN1                     <---------DOF5.7(2)                                <---------ALFIN1                <---------YAB1                                     ------>ZmHOX2a(1)             ----------->HVH21                                    <---------ALFIN1             ----------->TGA1                               --------->ARR14(2)         <-----------GT1       -------->P --------->HSFB2a(2)   ------>ZmHOX2a(1)  <---------ALFIN1 -----TEIL ----------->RAV1(2)<-----------GT1               <---------ARR14(2) ------>ZmHOX2a(1)   <- ----->GLK1(2)--------->MYB52(1)       <----------DOF2<-----------GT1 ------>ZmHOX2a(1)      <-------   ttcaattgtatatacctgacgattaacgttttctaccccttcttttggaattgtattcaccatttcctcctcctccaactcctccccattcccgtctttc  6088900                                                                                     <------ZmHOX2a(1)                                                                                 <---------MYB52(1)                                                                                <----------DOF2                                                                               --------------->AGL15                                                                               <---------------AGL15                                                                            <---------ARR14(2)                                                                            --------->ARR14(2)                                                                           <-------GAMYB                                                                          <---------DEAR3(2)                                                                          <---------MYB46(3)                                                                         <---------DEAR3(1)                                                                       <---------RAP2.3(1)                                                                      <---------RAP2.6(2)                                <---------TOE2(3)           ------>ZmHOX2a(1) ----------------->AGL1                          --------->WOX13(1)              ------>ZmHOX2a(2)--------->ATERF1(1)      <                       <-----------HVH21                  ==================================HOX2a_HOX2a <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  --------->ARR14(2)--------->ABI4(2)         - ---------DOF2  ----------->HVH21                  <-----------HVH21  <---------DEAR3(1)xxxxxxxxxxxxx ---DOF2       <---------WOX13(1)      ---------->DOF2  <---------ARR14(2)<---------ATERF1(1) -------   gcttcttcgaattgttgaatgacagcgtcaattagaggtttcaaagttgtccctgtctgatcctcttcaatttcggcggttcctttaggagaagcctcat  6089000                                                                         <---------At4g35610                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                                  --------->ARR11(3)          <---------ARR14(2)                                     --------->REM1(1)          --------->ARR14(2)                                   ----------->RAV1(1)      <-------MYC3                                           <------NtERF2      ------->MYC3                                           --------->LBD16     --------->ANAC46                                        ------>NtERF2   <---------ANAC46   <---------ALFIN1                                         --------->ANAC46<---------At4g35610  <---  -------->P                                                --------->DEAR3(1)                -------  ------>MYB46(1)                                   <---------YAB1<---------ARR11(3)          <------  ------>MYB83                             <----------DOF2  --------->RAP2.6(2)           <---------ARR14(2) ----------->RAV1(1)   <----------DOF2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->ETT(1) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   <---------ARR14(2)   --------->RAP2.3(2)      <-----------HVH21 -------->AtMYB61     <---------DAG2 <---------MYB46(3)     --------->RRTF1(2)      <-----------RAV1(1) xxxxxxxxxx>smallRNA(se3)          <---------At4g35610     --------->RAP2.3(1)      <xxxxxxxxxxxxxxxxsmallRNA(i) -->bZIP60(2) ------>ZmHOX2a(1)    --------->At4g35610     <---------LBD16  <---------ZAT2--------->ARR14(2)   caccaacacgcggttcctccatagccttttcaatttcagcggtttctttgtagtatcattcgccgcaacatctcgtgctgctggttctgtcggacctgct  6089100                              <---------TOE1(2)                        <---------GLK1(1)                        <---------At4g35610                        --------->At4g35610                        --------->GLK1(1)                     --------->ATERF1(1)                    <---------ATERF1(1)                    <---------RAP2.3(1)                    --------->RAP2.6(2)                   --------->ATERF1(2)                   <---------ATERF1(2)                   <---------DEAR3(1)                  <------NtERF2                  <---------LBD16                  <---------At4g35610                                               ------>NtERF2                  --------->ATERF1(1)                                            <---------ATERF1(1)                  --------->At4g35610                                          --------->SPL7     --------->ETT(1)<------NtERF2                                           <---------SPL7   <-----------HVH21------>NtERF2                                            --------->LBD16  <------MYB83   <---------ORA47(2)                                          ----------->HVH21  <------MYB46(1)<---------RAP2.3(1)                                        --------->MYB46(3) --------->MYB59 <---------ATERF1(1)                                       <---------LBD16 ------MYB46(3) <---------DEAR3(1)                          <xxxxxxxxxxxxxxxxsmallRNA(i)     <------- -->ZAT2        <---------RAP2.3(3)               --------->MYB52(1)       <---------At4g35610      - ---ZAT2        <---------DREB2C(2)               <-----------GT1    --------->HSFC1(2)      --------   ggttcggtcggaactaagtcggcggcatctccctcgttctcaatttctgaagtaactggttctgatgtcgaaacttcaccggacgacgacttctccgtcg  6089200                                           *TSS                                  --------->ANAC58             --------->ANAC58     --------->ANAC58             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             --------->ANAC58 --------->ZAT6                                           ----------->GT1 ----HVH21  --------->ATERF1(2)   --------->ANAC46      <---------ATHB12             <----------ID1 -------->YAB1<------NtERF2  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                  --------->DAG2 ->LBD16   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ZAT6                ---------->DOF2   aatcatatacagggccagcaataccgtctctaacacgagccatcaaactattacactaatcaagaattcgtcggaaaatcgtgaaaggcgagaaaatttt  6089300                                   --------->ARR14(2)                                   <---------ARR14(2)                               --------->At4g35610                                               ----                               <---------At4g35610   <---------ICU4                              ----                    <------------CBF--------->MYB52(1)    <---------TOE2(3)            <xxxxxxxxxxxxx   gaatttgattttggaaaatttgaattgaatgagagcagaaacggtttgattttaaaaattagggttcgacaaaaaatgggaattagaagagtagcattcc  6089400                                                         <------MYB46(1)                                           --------->ATHB12              <---------ARR14(2)          --------->AHL20(2)                                <--------          xxxxxxxxxxxxxxxx>smallRNA(s)    <---------AHL20(2)                             --------->GLK1(2)         xxxxxxxxxxxxxxxx>smallRNA(s)     <---------AHL20(1)                            <---------GLK1(2)    <---------DAG2                    <---------AHL20(2) <------MYB83               <---------DOF5.7(2)    <----------DOF2               <---------AHL20(2)    <---------AtMYB61          <---------WRKY38(1) -->ZmHOX2a(1)--------->ARR14(2) --------->AHL20(2)     --------->MYB59            <---------WRKY12 ----->LBD16  xxxxxxxxxxxxxxxx>smallRNA(s)--------->AHL20(1)<---------LBD16       ----------->HVH21 xxxxxxxxxsmallRNA(si3)    ------>ZmHOX2a(1)     <---------LBD16               <---------DEAR3(1)   tggttactttttcgcagatagtggcattcctgccatttattcaatttattgcacgggtttggtccggtttactaaaaaacttcggtgaacgattcttatt  6089500                                                         <------NtERF2                                                         ------>NtERF2                                                        --------->RRTF1(3)                                                        --------->ANAC46                                                        --------->RRTF1(2)                                                        --------->RAP2.3(2)                                                        --------->DEAR3(1)                                            --------->LBD16    --------->GLK1(2)                                           <---------ANAC46 --------->ANAC58                                          <---------LBD16--------->LBD16                                         --------->MYB52(1) --------->ANAC58                                       <---------SPL7   --------->RAP2.6(2)                             ------>ZmHOX2a(2)          --------->RAP2.3(3)                           --------->ARR11(3)          --------->RAP2.3(1)                           <---------ARR11(3)         --------->At4g35610                       <---------MYB46(3)--------->SPL7--------->RRTF1(1)                   <---------AtMYB61  <---------ANAC58<---------ATERF1(1)                 ------>ZmHOX2a(1)    <---------ANAC58<---------At4g35610             --------->ANAC55(2)                 ===================HOX2a_HOX2a       <------NtERF2                   <---------ANAC55(2)                 <----------DOF2 --------->ZAT2      --------->ANAC46             <-----------HVH21              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ZAT18       <----------DOF2         <-- -YAB1    ---------->DOF2 xxxxxxxxxxxxxxxx>smallRNA(s)------>NtERF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   cgatggacatatcaaagtcctttggtggtgatctgtgctcgcgtaccggagaagtccgccgcaagactctgtgaagctttgattcgtcaagtattcgatt  6089600                                                                         <---------ANAC58                                                                     <---------MYB46(3)                                                                     <------MYB83====================                                                                     <------MYB46(1)                                   --------->ANAC58              <---------MYB46(3)                                   --------->ANAC58           <<<<<<<<<RAP2.2    --------->O2                       <---------ZAT18     <---------YAB1    <---------TOE2(3)   --------->TGA1a   <- <---------ZAT6        --------->ZAT18  --------->ICU4  <------------------------ANAC81           --- ---------GT1     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------MYB52(1)<---------ANAC58         <--   ttactggtaattgaatttctcttagtccacaattcgtaagaaattatgttattctctgttttttagattgttggttcttgctctcgtctcacattcgaaa  6089700  Previous    Next  AGI:  At2g14350.1    Description:  transposable element gene. expressed protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287 Range:  from: 6086642    to: 6089243    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version