Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <---------ARR14(2)                                                      --------->ARR14(2)                      -------                                                      <---------GLK1(2)                       <------                                                    --------->LBD16                         --------- ----------DOF2                           ------>ZmHOX2a(1)                               <---------SPL7 >At4g35610                 --------->AtLEC2      <---------LBD16                       ------------- -At4g35610        --------->GLK1(2)      ----------->GT1                              <---------At5g28300 -RAV1(2)<---------AtMYB61 ------>ZmHOX2a(1)    <-----------GT1    <----------DOF2    <-----------GT1   ttcttttagcattggtagaacaatctgtccttgcatacaacatcctgtataaaccggattagcactcttctttcttctatttagtctttcaccgtaccag  6071900                     <-------MYC3                     ------->MYC3                    <---------TGA1a                    --------->TGA1a                   <-------MYC3                     --------->TOE1(3)        <---------ZAT14                             --------->TOE2(3)   <---------ZAT18 ------->MYC3               <---------ICU4   --------->ZAT18<---------TGA1a             --------->YAB1                                        - -->HSFB2a(2)     --------->TGA1a            <---------YAB1        --------->TOE2(3)               <- ---HSFB2a(2)<---------ZAT18                 --------->ICU4       --------->YAB1       <---------ANAC58 >SPL7  --------->ZAT14                  <-----------TGA1     --------->MYB46(3)       <---------ANAC58 -->AtSPL8   --------->ZAT14      <---------ALFIN1 ----------->RAV1(2)              <-----------GT1--   aaaattgcactacaatgcacacatgtgtgattcgcatcaccttcgtcatgataacctgaatcgaacaaacatcaatacatgttgtttttccttgtttcta  6072000                                                                        <---------At4g35610                              <---------MYB52(1)                  --------->At4g35610                             ------>NtERF2                        <---------At4g35610                      --------->ATHB51                         <---------HSFC1(2)                      -------->ATHB1                           --------->HSFB2a(1)                      <---------ICU4                           --------->At4g35610                     <---------YAB1                            <---------ZAT2   <---------ANAC46        <---------AHL20(1) <---------RAP2.6(2)                 <---------At4g35610    <---------AHL20(2)    <---------AHL20(2)--------->ATHB12                         --------->HSFC1(2)     --------->AHL20(2)   --------->AHL20(2)--------->AHL20(1)            ------>ZmHOX2a(1) --------->At4g35610 -------->AHL20(2)   <---------AHL20(2)  --------->At4g35610   --------->ZAT2   <---------ANAC58 --------AHL20(1)    --------->ICU4<---------MYB46(3)<----------DOF2 <---------At4g35610 ------->AHL20(1)    <---------ATHB51<xxxxxxxxxxxxxxxxsmallRNA(i) --------->ZAT2<---------ANAC58   atatatataatatatgttttaaaattattgccgctagtggatgaactgccatcctctttgttcgaagctgctgcagcaaattccttgtttaaattccttc  6072100                                       ----------->RAV1(2)                                      -------->P                   --------->YAB1    ------->GAMYB --------->At5g28300                  <---------ATHB12  --------->MYB46(3) --------->GLK1(2)                          ---                --------->WOX13(1)  <---------MYB111(2)------->TEIL                              ----       <----------DOF2       <------MYB83         ----------->GT1                       <---------ZAT14    <---------ARR11(3)       <------MYB46(1)     <---------DEAR3(1)                     --------->ZAT14    --------->ARR11(3) <---------AHL20(2)    ------>ZmHOX2a(2)  ----------->HVH21      xxxxxxxxxxxxxx   ttaacaaatctttcatgtcaatcatattatttggttcaacaacctgatcgctcggtgaatctttgtctgactcatactcttcttgactactacagtcaaa  6072200                              --------->ETT(2)                        <---------ARR14(2)                        ------>MYB83                  ----------->HVH21                --------->At4g35610           <---------GLK1(1)  <---------ETT(2)    <---------YAB1--------->WRKY12                                                   ---------->DOF2   --------->ARR11(3)   ------>MYB46(1)                                             <---------AHL20(2)   <---------ARR11(3) <---------MYB59                                       ----------->GT1  --------->YAB1------>ZmHOX2a(1)                                        <-----------GT1    <------NtERF2 ------>AHL20(1)----------->RAV1(2)                                   <---------AHL20(2)  --------->ALFIN1 ----->AHL20(2) <---------At4g35610                          --------->AHL20(2) --------->AHL20(2) <- xxxxxxxxx>smallRNA(si3)--------->ARR14(2)     ---------->DOF2       --------->AHL20(2)<---------TOE2(3)   tatatgatcatcgaattcctctgacctatctgtagacagaagaaaacatgaaagtagcacaaataaaacaattttatactgtttatataaaggtggcaat  6072300                                                                                    ------------>CBF                                                                                    <-------TEIL                                                                                 --------->ANAC55(2)                                                                                 <---------ANAC55(2)                                                   ------------>CBF              --------->ANAC58                                                 --------->YAB1             --------->bZIP60(1)                                        <---------ANAC58                    <---------bZIP60(1)                      --------------->AGL15     --------->ICU4           --------->ALFIN1               --------->TOE2(3)        <---------ANAC58             <---------ANAC58             <---------YAB1       <---------AHL20(2)                 <---------ANAC58             <---------TOE2(3)    --------->AHL20(2)                 <---------ANAC46            <-----------GT1       --------->AHL20(1)             <------------CBF<---------ANAC46          <---------WOX13(1)      <---------ARR11(3)            <---------ICU4   --------->ANAC58        --------->ATHB12          <---------AHL20(1)           --------->ICU4   --------------->AtSPL8       <---------YAB1 --------->ZAT6<------------CBF           <---------YAB1<-----------HVH21    <-- ---------->DOF2    *TSS    --------->YAB1     <---------KAN4(2)--------->ATHB12--------------->AtSPL3 --------HSFB2a(2) <-----------GT1--------->ARR11(3)    <---------ARR11(3)<-------GAMYB       -------   tctaaaagtatgattaacattataccactatcagaatatattgcttcagaatgatcaatttcttcatcattgagtgtgttgtcacgtacaatacttgtag  6072400                                            --------->YAB1           ----------->GT1                  <---------ICU4         <------------CBF                  <---------ATHB12         --------->AHL20(2)         >>>>>>>>>ARR2                   --------->WOX13(1)         --------->YAB1        --------->ATHB12                --------->MYB46(3)          <---------AHL20(1)       <---------YAB1                ------>ZmHOX2a(1)              <---------AHL20(2)     <----------DOF2            --------->GLK1(1)       --------->AHL20(1) -------GLK1(1)                <---------ATERF1(1)      <---------AHL20(1)         <---------YAB1 -->HSFB2a(2)                 <---------ZAT18          --------->YAB1<---------AHL20(2)     ---------   aattctcctttgattgtaattttgttgaatgggggactcctaacaatcatcaaacaaaaatattaaacaataaaatttctgtttgactattgaacattag  6072500                                                --------->HSFB2a(1)                                                <---------HSFC1(2)                                                --------->HSFC1(2)                                                <---------HSFB2a(1)        <---------YAB1                                       <---------AHL20(2)               --------------->AGL15                                       --------->AHL20(2)            <-----------GT1  --------->YAB1  --------->TOE2(3)  --------->YAB1              <---------DAG2                  <--- >TOE2(3) --------->AHL20(2)  <----------DOF2  ------->TEIL      <----------DOF2              <------   acaaacatactaaaaaataacataaatagctactttcaaatataaatcgaaccttgccctgttgatacttttttcttcttattggacattaatctaatgg  6072600                     <---------AHL20(2)                                                      --------                    --------->AHL20(1)                                                      <--------                    <---------AHL20(1)                                                  --------->MYB111(1)                    <---------ARR11(3)                            <---------ATHB12     <--------P         <---------ARR14(2)                                   --------->ANAC46     <---------ANAC46         <---------GLK1(2)                      <---------HSFB2a(2)           <---------ANAC58         --------->ARR14(2)    <---------ARR14(2)           --------->ANAC46  <---------ANAC58 ------ANAC46   --------->LBD16--------->ARR14(2)          -------->P        <---------TOE2(3)     == -----RAV1(1) <---------LBD16 <---------CCA1(2) --------->HSFB2a(2)    <XXXXXXXXXXXXXXXXXXXMIR158B <-   tggagacgatggattctcccgatatatttgttatatccgataagacatttctagagtaatctaccccaaacaatgtgtttacgtttggggtagtttgatt  6072700                                                    --------->AHL20(2)                                                   --------->YAB1                                              ----------->GT1                                            ---------->DOF2                                           --------->AHL20(2)                                         ------>MYB83                                         ------>MYB46(1)                                       ------->GAMYB--------->AHL20(1)                                       --------------->AGL15                     ------>ZmHOX2a(1) <---------------AGL15                   ------>ZmHOX2a(2)  ----------------->AGL2             <---------ANAC55(2)      ----------------->AGL3             --------->ANAC55(2)     --------->ANAC58          <-----------GT1           --------->AHL20(2)             --------->At4g35610    ------->GAMYB>>>>>>>>>>GT-3b                         <---------AHL20(2)             <---------At4g35610   <---------MYB111(2)      --------->YAB1           <---------ZAT6 ->ATHB12  <-----------RAV1(2)     <---------MYB55(2)     --------->AHL20(1)   ------->TEIL        <- -YAB1   <-----------HVH21         --------->MYB46(3)    --------->AHL20(2)   <---------CCA1(2) ----- =========================HOX2a_HOX2a--------->ANAC58    --------->YAB1--------->ANAC55(2)  <-------- -----ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->YAB1   <---------ANAC55(2)  ---------   aggagttaagaagtcaggtgatcctactgagaaaacaacaaccaaataaagaaaaataataatattaactaatatgtattgtatctagtattaaaaaatt  6072800  Previous    Next  AGI:  At2g14300.1    Description:  transposable element gene. pseudogene, similar to putative helicase, blastp match of 40% identity and 2.5e-288 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)} Range:  from: 6067399    to: 6072320    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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