Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ------>ZmHOX2a(1)                                                                             --------->GLK1(1)                                           <---------ANAC46                 <---------GLK1(2)                                       <----------DOF2                      --------->ARR14(2)                                    ------>NtERF2               <---------MYB52(1) <----------DOF2                                    <---------RAP2.6(3)       ----------->GT1<---------GLK1(1) ------MYB52(1)                    <---------ANAC58    ---------->DOF2      <---------ARR14(2) ---LBD16                          <---------ANAC46--------->ANAC46 --------->ARR11(3) -ARR14(2)                         <---------ANAC58----------->RAV1(1)  <---------LBD16 >ARR14(2)                       ------>NtERF2    --------->MYB46(3)<---------ARR11(3)   ctagggaagttgaagaacaagactacaacgtactctgccgtcttttcgtctacccacaaaagacccgttaaatcttcggattcctctttatctagtagag  6065200                  ------>ZmHOX2a(2)                 <------ZmHOX2a(2)                <---------ARR11(3)                --------->ARR14(2)                --------->AGP1                <---------ARR14(2)                <-----------ARR10                <---------AGP1                --------->ARR11(3)            <---------At4g35610    --------->HSFC1(1)                         --------->ARR11(3)              <------ZmHOX2a(1)    --------->HSFB2a(2)                        >>>>>>>>>>GT-1                --------->YAB1 ---------    <---------HSFB2a(2)                       --------->YAB1          --------->WOX13(1) <-----------    <---------HSFC1(1)                       <---------ATHB12      --------->GLK1(2)    -------->P <-   actcttctagaggcagaagatctatcttgttctcgctaaacacatcaatgatatagagattgaatagagagtctatcaataggaaccatttacccgagtt  6065300                                                                                                   <-                                                                                                   --                                        --------->ARR11(3)                                      =====                                        <---------ARR11(3)                                      -----              --------->LBD16          <---------CCA1(2)                                        =====          --------->ARR14(2)       ----------->GT1                                           -------- --------->ANAC46      <---------ARR11(3)                <---------HSFB2a(2)                 <------- --------->ANAC58      --------->ARR11(3)                --------->HSFB2a(2)                <-------- --------->ANAC58 ---------->DOF2<---------ANAC46       <---------LBD16                 --------->DOF5.7(2) >LBD16   <---------ARR14(2)     <---------ANAC58   <<<<<<<<<TBF1              <---------HSFC1(2)  -- ------AGL1  <---------LBD16<----------DOF2<----------DOF2                     --------->HSFC1(2)  <- --------AtLEC2--------->LBD16   <---------ANAC58<<<<<<<<<TBF1    --------->ZAT6        <---------MYB52(1)   tgcaaggaatcgaatccctgaaaagtatctctttgtcttgtaaatcttttcttcttcttctggattgaacagtagcacagaaccatcttcgttatctcct  6065400                                <---------ANAC58                        ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                      --------->ARR14(2)            --------->ANAC46    <---------ANAC58          --------->At4g35610 <---------AHL20(2) --------HSFB2a(2)    <---------ARR11(3)                                                 --------->At5g28300 ------->HSFB2a(2)    --------->ARR11(3)                                                ----------->GT1 ==============================HOX2a_HOX2a                                              <---------ANAC46 ->ZmHOX2a(1)         --------->ARR14(3)                                               <---------DEAR3(1) =============================HOX2a_HOX2a                                           <---------LBD16 ------->AGL15        <---------ARR14(3)                                 ------->GAMYB--------->LBD16 --------AGL15        <---------ARR14(2)      <---------At4g35610       <---------MYB52(2) ---------AGL1       <---------GLK1(1)        --------->At4g35610       <---------MYB55(2) ------->HSFC1(1)    --------->GLK1(1)     <---------MYB52(1)           --------->MYB46(3) --------HSFC1(1)--------->AtLEC2        <---------ZAT6                 <---------MYB111(2)    ------   tctggaaacagcatcagccatggagatcttattttcttgggaactgttagcttcgaactcaagttccagttccaacaaacaatcttcgcgcggtgaaaat  6065500                                                           <---------ANAC58                                                          <-------TEIL                                                         --------->ALFIN1                                                        <-------PIF5                                                        ------->PIF5                                                 <---------ETT(1)                                                 ----------->HVH21                                                 --------->DEAR3(1)                                             <---------HSFC1(2)                                             --------->ZAT2<---------ANAC58                                  <---------ARR14(2)   --------->ZAT2                           <----                                  --------->ARR14(2)   <---------ZAT2  <---------GLK1(1)        -----                                  --------->GLK1(2)  <-----------RAV1(2)                 <------MYB83                                 <---------GLK1(1)------>NtERF2        --------->GLK1(1) <------MYB46(1)                             --------->ANAC46<---------At4g35610<---------ARR14(2)       ----------->GT1     --------->TOE1(3)    ------>ZmHOX2a(2)  --------->GLK1(1) <------ZmHOX2a(1)       <---------WOX13(1)     --------->TOE2(3)   <------ZmHOX2a(2)   <---------ZAT2<---------ANAC46          --------->ATHB12 ---------->DOF2        --------->ARR11(3)   <---------GLK1(1)----------->ARR10     --------->ICU4 --->GLK1(2)            <---------ARR11(3)   --------->At4g35610--------->ARR14(2)  <---------YAB1   cggtaaagcttaatcgatgaaaaatagatcccagcaaatctggagggagctccgaccaggtgcgaggatttggagttcccatggtcttgattggtgaata  6065600                        ------->TEIL                        --------->ARR14(2)                        <---------ARR14(2)         --------->CCA1(2)        --------->ARR11(1)            <---------YAB1        ----------------------->TaNAC69(2)           <---------ANAC46        <---------ARR14(2)    <---------YAB1         <---------ANAC58        --------->ARR14(2) <----------DOF2          ---------->ID1       <---------GLK1(1)<---------ARR11(1)        <-----------RAV1(1)    <----------DOF2      *TSS<-------TEIL <---------ARR14(1)<---------DAG2               <-----------GT1 -------GT1            <---------CCA1(2) <----------DOF2          <----------DOF2                   - ---->MYB52(1) --------->HSFC1(2)  <---------AHL20(2)<---------ANAC58 ---------->ID1         <-------   acggtttggagattcgacgtttctcgtatcttttgattttatgctttttcttatgtcgtcttgttgttctttttcctttctattttctcacatttctttt  6065700                                           <---------ANAC58                                           <---------ANAC46                                           <---------ANAC58                                       <---------ANAC58                                       <---------ANAC58                                   <---------ANAC58                                   <---------ANAC58   <---------DAG2                        ---------                                <----------DOF2       <----------DOF2          <-----------GT1 <-----------GT1             <-----------GT1      ---------->ID1           --------->LBD16 <-------TEIL --------->ID1               ---------->ID1--------->ANAC55(2)         -------->ZAP1    ------>MYB83 ---DOF2 <----------DOF2 <----------DOF2   <---------ANAC55(1)       <-----------GT1    ------>MYB46(1)   ttgtcacatttcttttttctcacatttctttttcctttcttgtttgcgtgttgtccctttttgactagtattgaccccgtgttactcaccaaattcataa  6065800          <-----------GT1         <---------YAB1       <---------ICU4       --------->YAB1      --------->ICU4    <---------ICU4    --------->YAB1                                                 --------->ANAC58   --------->ICU4              ---------->DOF2                     ----------->GT1   <---------YAB1            --------->AHL20(2)                    --------->ANAC58  --------->AHL20(2)         --------->YAB1                  <---------------------WRI1             <  <---------AHL20(2)         <---------AHL20(2)       --------->YAB1                                <  <---------AHL20(1)      --------->YAB1             <------ZmHOX2a(2)                              <  --------->AHL20(1)    <---------WOX13(1)          <---------ARR11(3)                          <---- --------->YAB1   <----------DOF2                   --------->ARR11(3)      --------->ALFIN1<-------- >YAB1<---------YAB1 <---------YAB1                <------ZmHOX2a(1)      <-----------RAV1(1) -------   caattataattataactagtcttttgattaataaaaagtttgattttcaacgaggatcataacatcggtaagaaaaatgtgggagttagaccctgttcgt  6065900                                                                                  <---------MYB52(2)                                                                                 --------->ZAT2                                                                                 --------->At4g35610                                                                              --------->At4g35610        <---------ANAC46                                                      <---------At4g35610        <---------ANAC58                                               <---------ANAC58        <---------ANAC58           >>>>>>>>>>>>WRKY18                  <---------ANAC58           <--   ----------------------->TaNAC69(2)  ----------->HVH21           <---------ANAC58              <--- ---------ANAC58            --------->ARR14(2)                     <---------ANAC58          <------- ---------ANAC46            <---------ARR14(2)                     <---------ANAC46 --------->MYB52(1) ---------ANAC58         <---------ANAC58                          <---------ANAC55(1)    <---------MYB46(3) -----MYB52(1)           <---------ANAC58                          --------->ANAC55(2) --------->MYB52(1) -MYB52(1)               <---------ANAC46         ---------->DOF2  <---------ANAC55(2)--------->MYB46(3) -->MYB52(2)  <---------AtLEC2   <-----------GT1<------ZmHOX2a(2)<-----------GT1 <---------At4g35610   ttgcttgtttgcttgttcatggatttagcgtatattgaccattgacatcgatcaaagacagtatgtattacttgtttgtctgcagctaacaacggttgtc  6066000                           ----------->GT1                       --------->AHL20(2)                       --------->AHL20(1)                       <---------AHL20(2)                      --------->AHL20(2)                    --------->AHL20(2)                   <---------ICU4                    <-------GAMYB                  <---------AHL20(2)                <------MYB46(1)                  <---------ATHB12                  <---------MYB46(3)                  --------->ICU4                    <------MYB83                                   <- <-----------RAV1(1)  <---------AHL20(2)           <---------AtMYB61                               -- -------MYB52(1)  <---------ATHB51                 --------->MYB59      ----------->GT1           <-- ----GAMYB        --------->AHL20(2)        --------->GLK1(2)   <---------AHL20(2)           -------- --MYB46(3)   --------->AHL20(2)       ---------->DOF2      --------->ICU4               <----------DOF2   gttgtgttgttttaaatcaaataattaaattgtattaacaaaaaagaatgtgtttggttgaaatatttaaaacagagttattagataatttcttttaaaa  6066100  Previous    Next  AGI:  At2g14290.1    Description:  F-box family protein. Identical to F-box protein At2g14290 [Arabidopsis Thaliana] (GB:Q9ZQ60); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G25290.1); similar to At3g03730-like protein [Arabidopsis lyrata] (GB:ABY60296.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 6064370    to: 6065606    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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