Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <--------ATHB1                                                                 --------->ATHB12                   -            <---------AtMYB61                                    --------->ATHB51                 <--   <---------ZAT14                                               <---------ICU4              <-------  <----------DOF2                         <---------ICU4        <---------ATHB51         <---------AHL20(2) -------ANAC46                            --------->ATHB12      <---------AHL20(2)       --------->AHL20(2) -------ANAC58                           <------ZmHOX2a(2)  <---------ATHB12         <---------ZAT6 < -------ANAC58                           <---------YAB1    --------->ANAC46------->TEIL<---------YAB1   tcgggtttactggtatggtcttcaaaacaataaacaaaaatggatcattgctcttgtttccactgaataattgaatgaaactacttagtattaatatact  6060700                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                                                                         --------->DAG2                                                                                   <---------YAB1                                                                                 <---------ICU4                                                                                 -------->HAHB4                                                                                 --------->YAB1                                                                                --------->ICU4                                                            ------>MYB46(1)    <---------AHL20(2)                                                       --------->ANAC46       --------->YAB1 -------->AHL20(2)                                     XXXXXXXXXXXXXXXXXXXX>MIR166A-G   ---------->DOF2 --------DOF2            --------->TOE2(3)         --------->YAB1    --------->YAB1----------->GT1 ----GT1                 --------->TOE1(3)    <-------TEIL  ------>MYB83     <---------AHL20(2) ---------AHL20(2)       <---------MYB59  --------------->AtSPL3<-------TEIL--------->AHL20(2)      <   ctttaattacatctaaaacagtagtaacctaaaaatcaactatagacgttcaattacaaaccaagcttcattcatacatataataatgaaaaaagcaaat  6060800                                                 --------->AHL20(2)                                           --------->ANAC58                      <-----------HVH21    --------->ANAC46                 ------>MYB83              --------->ANAC58                 ------>MYB46(1)         --------->ZAT6               --------->AtMYB61   <---------ANAC46             <----------ID1        --------->TOE1(3)          <---------ANAC58        <---------YAB1        --------->TOE2(3)          <---------ANAC58  <---------ICU4                 --------->ARR11(3) -----------GT1<---------MYB59<---------YAB1    <---------MYB52(1)       <-----------GT1   tttttcgaaacctaaaaccaaacccatcagttctgattcgtgaacactccattaattagttctaattggacaaattaacaagagaagagctcgaacttca  6060900                                                     ------->GAMYB                                                    <---------ANAC55(2)                                                    --------->ANAC55(2)             <---------HSFB2a(2)            ----------->GT1             --------->HSFB2a(2)          ---------->DOF2        --------->ANAC58               <---------HSFB2a(2)                                    -------        --------->ANAC58 <-----------------AGL2   --------->MYB52(1)                 --------->AHL20(2) <----------DOF2 ----------->GT1       --------->HSFB2a(2)                        ----------->GT1   gagcttttgcaagccctagaagtaaattctaaaactgggttccaaaaagaaataacggaatcgaaatcgtggattagcgaaggaagattaaaaacttaca  6061000                           <------MYB46(1)                          --------->MYB59                                                          <-                          <---------AtMYB61                           <-----------GT1            ----                          <---------MYB46(3)                       <---------ICU4                <---                       --------->ATHB12                  --------->ARR14(3)                      ----                --------->ANAC58   <------MYB83          <---------GLK1(2)                      <----                --------->ANAC58   <------MYB46(1)       --------->ARR11(3)                    <-----              --------->MYB52(1)  <---------AtMYB61      <---------ARR11(3)                  --------             <---------SPL7<------MYB83                  <---------ARR14(2)                --------->ALFIN1            <---------MYB52(2)  <------NtERF2            <---------ARR14(3)              <---------ANAC58           <---------At4g35610--------->ETT(1)         ----------->ARR10    *TSS         <---------ANAC46 --->DOF2  --------->At4g35610<---------LBD16      >>>>>>>>>TBF1  --------->ICU4         <---------ANAC58   gccatgagtttgcagcgaacgaaaatgtttggtcgggaggtttttgagacgaagaagaagattttgtgatttttacaaaactcaaaactgtgcgtgtgcc  6061100    --------->YAB1                                                                            -------    <---------ICU4                      ------------>CBF                                  --------->AHL20(2)   <---------YAB1                   <---------WOX13(1)                                    <---------AHL20(2)   <---------ATHB12                <------------CBF                                      --------->AHL20(2) ---------DOF2                    <---------ICU4                                         <---------AHL20(2) ----->At4g35610                  --------->ATHB12                                    --------->AHL20(2) ------At4g35610         <---------RAP2.6(2)                                          <---------AHL20(2) -->NtERF2              --------->RAP2.6(3)                                      <----------DOF2    < -----ANAC46            <---------At5g28300                                --------->ANAC46   <------ ----RAP2.6(2)--------->DAG2     --------->AHL20(2)                        --------->ANAC58   ------- ->ALFIN1   ---------->DOF2      <---------AHL20(2)                        --------->ANAC58--------->YAB1   gcttaatcattctcaaaaggctctattacggcccattaattgcccaatttctatttctgtgtccagtctaaacaactacgaaactttataaattaataat  6061200                            <---------AHL20(2)  <---------AHL20(2)                            --------->AHL20(2)  --------->AHL20(2)                            --------->YAB1     --------->AHL20(2)          <---------AHL20(2)                         --------->YAB1        <---------AHL20(2)   <---------ICU4      --------->TOE2(3)                        <---------YAB1      <---------AHL20(2)      <---------AHL20(2) ----------->GT1                      --------->YAB1       --------->AHL20(2)      --------->AHL20(2)  <---------ANAC55(1)                  --------->AHL20(2)       --------->ICU4       <---------AHL20(2)     --------->ANAC58                  <---------AHL20(2)  --------->AHL20(2)        --------->AHL20(2)     --------->ANAC58                 <---------AHL20(2)   --------->YAB1           --------->AHL20(2)      --------->ANAC55(2)             --------->AHL20(2)   <---------AHL20(2)<---------AHL20(2)     --------->AHL20(2)      <---------YAB1 --------->AHL20(2)  <---------ICU4        <---------AHL20(2)      <---------ANAC55(2)  --------->ARR11(3) <---------AHL20(2) --------->ICU4      --------->AHL20(2)<---------AHL20(2) -->YAB1     --------->AHL20(1)  --------->AHL20(2)<---------AHL20(2)     --------->AHL20(2) ---------TOE2(3)--------->AHL20(2)--------->YAB1  <---------AHL20(1)     <---------AHL20(2)        - ---AHL20(2) <---------AHL20(2)<---------AHL20(1)  --------->AHL20(2)   --------->TOE2(3) ---------->DOF2 -->AHL20(2)--------->AHL20(2) --------->AHL20(1)  --------->AHL20(1) --------->ICU4   <---------ANAC46   ataagattatgaaattttattaatttataataatatataataatatttattaatttattctataaattaataaatattaatttatacttacgtaaaacac  6061300                                                                                                <----                                                                                              <------                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                               <---------ARR11(3)                                                                               --------->ARR11(3)                              --------->AHL20(2)                          --------->AHL20(1) <-------                       --------->TOE2(3)                                  <---------AHL20(1) <-------       <---------AHL20(2)     <---------AHL20(2)                  --------->YAB1             --------      <---------AHL20(1)     <---------AHL20(1)                --------->WOX13(1)      --------->ARR11(3)      <---------AHL20(2)     <---------AHL20(2)               <---------AHL20(2) --------->TOE2(3)  <      --------->AHL20(2)     --------->AHL20(2)<-----------RAV1(1)--------->AHL20(2)   <---------ARR11(3) -------->YAB1<---------AHL20(2)   <-----------GT1  <---------ANAC46   --------->AHL20(2)  <---------   aatactaatttttttttaaaatgtttcttaatttaattttcttcatattttgttgtttgtatattcaattaaaaaaaatattatcttattatcttaccga  6061400                                              <---------AHL20(2)                                              --------->AHL20(2)            <---------AHL20(2)   <xxxxxxxxxxxxxxxxsmallRNA(s)         --------->AHL20(2)      ----------->RAV1(1)      --------->AHL20(2) ----------->GT1                --------->DREB2C(2)       --------->ICU4 -----GLK1(2)                   <---------ETT(1)     --------->YAB1 ---------AGL15                --------->DEAR3(2) <-----------GT1 -------->AGL15               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)             <---------AHL20(2) --------->AGL3            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->AHL20(1) ----------AGL2         <---------TGA1a      --------->AHL20(2)<---------AHL20(1) ----------AGL3         <---------O2         <---------AHL20(2)--------->AHL20(2) --------->AGL1        <xxxxxxxxxxxxxxxxsmallRNA(s) ---------->ID1<---------AHL20(2) ----------AG        ----------->HVH21   --------->AHL20(1)    <---------AHL20(2) ----------AGL1     xxxxxxxxxxxxxxxx>smallRNA(i) <---------AHL20(2)          <---------AHL20(2) --------->AG      <-----------------AGL1<---------AHL20(2)   <---------AHL20(2) ---------TOE2(3)  ----------------->AGL1<---------AHL20(1)   --------->AHL20(2)                 <--- --GT1  <---------ICU4<---------ALFIN1   --------->AHL20(2)<---------AHL20(2)--------->AHL20(2)  ----   ttttggttaatttttatattggcccgacttgggaccgacaaaatttattaatttatcgtatttattaaattatcgagtattaatttgtagagtttctact  6061500                                                                                          --------->ICU4                                                                                    <---------AHL20(2)                                                                              --------->YAB1                                                                           --------->YAB1 <---------YAB1                                                         --------------->AtSPL8    --------->AHL20(2)                                              <---------AHL20(2)          <---------AHL20(2)                                       --------->YAB1  <-------TEIL      <---------AHL20(1)                                    <---------ICU4 --------->MYB59       --------->AHL20(1)<---------ICU4 ------ZAT14                <---------ATHB12  --------->AHL20(2)         --------->AHL20(2)--------->ATHB51 ----->ZAT14          <-----------GT1 <---------YAB1  --------->CCA1(2) --------->YAB1 <---------AHL20(2)   gtagtatgtgtttgattttttgtttaacaaatcactaaaaattatagtttaattagatacatgtactaaaacaaatataatcatattaattcattatttc  6061600  Previous    Next  AGI:  At2g14285.1    Description:  Identical to Probable small nuclear ribonucleoprotein F [Arabidopsis Thaliana] (GB:Q9SUM2); similar to RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) [Arabidopsis thaliana] (TAIR:AT4G30220.1); similar to hypothetical protein OsJ_005430 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21947.1); similar to Os11g0657300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068396.1); similar to small nuclear ribonucleoprotein F, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95170.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and arch Range:  from: 6059414    to: 6061076    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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