Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 --------->TOE2(3)                                                         <-----------GT1                                                     --------->AHL20(2)                                                     <---------AHL20(2)                                                    --------->AHL20(2)                        <------                                             ----------->GT1   --------->TOE1(3)     --------->ARR14(2) --------ANAC46                          <---------AHL20(2)    --------->YAB1        <---------ARR14(2) ----HSFC1(2)                           <---------AHL20(2)    <<<<<<<<<ARR2       --------->TOE2(1) --->HSFB2a(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---------->DOF2 --------->TOE1(1) ----HSFB2a(1)       <---------AHL20(2) --------->AHL20(2)    <<<<<<<<<ARR1   --------->ARR11(3) --->HSFC1(2) --------->TOE2(3)     --------->AHL20(2)   --------->YAB1       <---------ARR11(3)   ttcttagataactaaatctcaaatttatgtcaaaacaaatatttaaattgcaaaataaatcacaatcttaaagaaaccaagacctcgtattctccaatta  6052200                                                                              ----------->GT1                                                                             --------->DAG2                                                                        --------->LBD16                                                                       <---------HSFB2a(2)                                                                 <---------ARR14(2)                                                                 --------->ARR11(3)                                                                 <---------ARR14(3)                                                   <---------GLK1(2)--------->GLK1(2)                                          <---------AHL20(2)     --------->ARR14(3)                                          --------->AHL20(2)     <---------ARR11(3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------CCA1(1)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------RVE1(1)                      <---------ANAC46<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------ARR14(2)  --------->HSFB2a(2)              --------->ANAC58  --------->ARR14(2) --------->ARR14(2) <---------LBD16               -              --------->ANAC58  <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ------ ---ATHB12  ---------->DOF2<---------ANAC46--------->ATHB12      --------->ARR14(2)           -------   gtcaagagagaagagaaagccatcgcgtagagtggatttggagattaattgcagatttggaattgaagatattctgggaaaggtttttttcttcgataaa  6052300                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                <----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                              <------                                                                                           <---------AHL20(2)            <----------ID1                                                                 --------->AHL20(2)            ----------->GT1                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->AHL20(2)   ------------------------>ANAC81   --------->DAG2                                   <---------AHL20(2) ---------->GT1      ---------->DOF2---------->DOF2          ----------->GT1---------->DOF2--------->AHL20(1) --->DAG2  ------------------------>ANAC81<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----------->GT1<----- --->DOF2 ---------->DOF2    --------->CCA1(2)       <---------GLK1(1)  ----------->GT1--------->AHL20(2)   gtgagaaaaaaaaaaagaaaaaaaaaagaagagatgggaaaaggagagagaagagatagccgattgaaaaaatgtagttaaagagtaaataaataaaata  6052400         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     ---------->DOF2                                 <---------ICU4     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)            --------->YAB1    <---------AHL20(2)        <----------DOF2        -------->HAHB4 -------->AHL20(2)           <---------ANAC58     <---------ICU4                     --------->ANAC58 ---------AHL20(2)           <---------ANAC58    --------->ICU4                      --------->ANAC46 --------AHL20(2)      ---------->DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           --------->ANAC55(2) ------->AHL20(2)     <---------AHL20(2)      <-------TEIL                           --------->ANAC55(1) --------AHL20(1)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            <---------ANAC55(2) ------->AHL20(1) --------------->AGL15       --------->ZAT18                        --------->ANAC58 -----AHL20(2)    <---------------AGL15  ---------->DOF2                             ----------->GT1 ---->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxxxx ---->AHL20(1)   ----------------->AGL3 <---------AHL20(2)              --------->DAG2 --->AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------MYB59        <---------ATHB12<xx ---AHL20(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ICU4     ---------->DOF2           <--- ----AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<--------HAHB4<----------DOF2<xxxxxxxxxxxxxxxxxxxxx   atttatttaaagtgccttctccatttaaagtgctttctctatttaaagtgcataattatgaactaacttttaaaaaagtgtctaatcacgtaatattctc  6052500                 <---------LBD16             <----------DOF2                                      <-----------GT1           xxxxxxxxxxxxxxxx>smallRNA(i)                       <---------YAB1           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <---------ICU4          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              --------->YAB1          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->ICU4          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            --------->YAB1         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           ----------->GT1         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->AHL20(2)                              -      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->YAB1<---------AHL20(2)               -----    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        ----------->GT1 <---------CCA1(2)            <------ <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->HSFB2a(2)--------->AHL20(2)            <------- xxx>smallRNA(fl3)<---------LBD16           <---------HSFB2a(2)--------->YAB1                <------- xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------LBD16 <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------DOF2 <---------DAG2     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ------>ZmHOX2a(1)  <----------- xsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------YAB1<----------DOF2 ------------>CBF   ttttttttttaggcacttttcagggatgagacattttctcttgtttctggatgataaaatgataattatatccttttcaaactaaaccatcaattgctta  6052600                                                  --------->CCA1(2)                                                 --------->ARR14(2)                                           <-------GAMYB<---------At4g35610                                           <---------At4g35610 ---------->GT1                            --------->At4g35610 ---->MYB52(1)                     *TSS------------>AtMYB77             --------->TOE2(3) ----DOF2                         <---------AHL20(2)    --------->At4g35610           <---------ARR11(3) --ANAC58                  <---------ARR11(3)  ----------->ARR10        --------->TOE1(3) --ANAC58                  --------->ARR11(3)  <---------TOE2(3)     <-----------GT1  --------->ARR11(3) -CBF                <------------CBF  ----------->RAV1(1)    ---------->DOF2 <---------ICU4  <------   accggttaacatggttttgtttgaattgatatctaataaaacgacagttgagatttgcagatgagaaagagttaccttcacaattacaggtcttccgatt  6052700                                                                                           <---------ALFIN1                                                                                           --------->AtMYB61                                                                                          --------->MYB46(3)                                    ------>NtERF2                                        >>>>>>>>>>>>                                   --------->LBD16                                      --------->ANAC46                                   ------>NtERF2                                       --------->MYB46(3)                                 <---------LBD16                                ------>ZmHOX2a(1)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             ------>ZmHOX2a(1)                         <---------YAB1                            <---------ARR11(3)--------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                              --------->ARR11(3)<---------ARR14(2) ---GLK1(2)          <---------ANAC46        <----------DOF2    ----------->RAV1(1) <---------CCA1(2)   atctcacaatctcgatgttgatggctgataattcttccggccaatctctttctcatcgcaaacctccaacatcttctccttcctctatatccaccactgt  6052800                                                 --------->CCA1(2)                                                --------->ARR11(1)                                                <---------ARR14(2)                          ---------                                                <---------GLK1(2)               --------->LBD16                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <------ZmHOX2a(1)                                      --------->TOE2(3)                        <---------HSFB2a(2)                               --------->HSFC1(1)--------->ARR14(1)            --------->HSFB2a(2)                               <---------HSFC1(1)--------->GLK1(2)             <---------LBD16                               <---------HSFB2a(2)                            <---------LBD16                               --------->HSFB2a(2)<-------TEIL--------->ARR14(2)--------->HSFB2a(2)                   <---------ANAC58--------->ARR14(2)         <---------ARR14(2)<---------HSFB2a(2)--      ------>ZmHOX2a(1)       <---------ANAC46  --------->ARR14(2)           ------>ZmHOX2a(1)     <- >>>>>LFY          <---------ANAC58<---------ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <--   ttcttctcctaaatcgccatttcgtcttcgtttcgagaaacctccatctagattcgggttatcgtttctgcatcgtctcctccgggaggagttttaaaga  6052900                                        <---------ARR14(2)                                        --------->ARR14(2)                                    <---------ANAC58                             <---------bZIP60(2)                                    <---------ANAC46                             <---------bZIP60(1)              <---------ANAC58 <---------REM1(1)                                 --------->bZIP60(1)              <---------ANAC58 <-----------RAV1(1)                               <---------ANAC46        -------->P           <------MYB46(1)                                   <---------TGA2(2)        ------>MYB83         <------MYB83                                     <xxxxxxxxxxxxxxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 ----------->TGA1  <----        ------>MYB46(1)     <---------MYB46(3)                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->DEAR3(2)         <---------AtMYB61                 --------->At4g35610--------->O2   ----- ->DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <---------At4g35610<---------O2   ----- ------->ARR14(2)         <---------MYB52(1)   --------->At4g35610            ----------->HVH21------ --------ARR14(2)        --------->ATHB12      <---------At4g35610    <---------REM1(1)      <------- ----ZmHOX2a(1)      <-----------GT1<---------ANAC58  --------->GLK1(1)  ------->TEIL       <------ZmHOX2a(1)   ggaaacgacctacaaggcttgatataccgattggtgttgctggatttgtagctccgatttcttcatcggccgatgtagctatgacgtcgagggaggagtg  6053000        ---------->DOF2    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ----------->GT1 xsmallRNA(fl3)        <-------GAMYB                                                                - -----ZAT14           <---------MYB46(3)                                                            < ---->ZAT14           ----------->GT1                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<----- ---->REM1(2)        <---------YAB1                      --------->GLK1(2)                    <------ --->ALFIN1       --------->ALFIN1              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->YAB1 --ANAC46      --------->DAG2                  <------ZmHOX2a(1)  ----------->GT1        <---------ATHB12   tagagaggttgaaagagaaggtgatggttattttgtttattgtaagagaggaagaagagaagctagagaggttatatcaagttggactccaatgataatg  6053100  Previous    Next  AGI:  At2g14270.1    Description:  pseudogene, protein phosphatase 2C, blastp match of 60% identity and 2.5e-08 P-value to GP|2582800|emb|CAA72341.1||Y11607 protein phosphatase 2C {Medicago sativa} Range:  from: 6052635    to: 6053126    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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