Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------ARR14(2)        ---------->DOF2                         --------->ZAT18          --------->ARR14(2) ----ZmHOX2a(1)                                 --------->ZAT14  --------->ZAT6 --ALFIN1                             ----------------->AGL1  --------->YAB1 ->ANAC46                <---------ETT(2)       <---------ZAT18 <---------YAB1                     <- ->RAV1(1)   --------->GLK1(2)    <---------ANAC58            <---------ICU4    --------->ZAT14    <- ------AGL1 <---------GLK1(2)     <---------ANAC58      --------->ARR14(2)     <----------DOF2    <--   ggaagtctcttaaagaatcccttgctgtcgaaaatagcttgccaaacttgtgaactcggttccattatcactgcgaaaactctttactcttgttgaaaac  6033700                  <---------AHL20(2)                 <---------AHL20(2)                                                                --                 <---------AHL20(1)                                                               ---  --------->ARR14(2)                                                                    --------->YAB1  <---------ARR14(2)                                                                   --------->ICU4 --------ANAC58  --------->AHL20(2)                ---------->ID1                      <---------ATHB12 --------ANAC58  --------->YAB1      <------ZmHOX2a(1)<---------MYB52(1) <---------ALFIN1         <-- -------------------WRI1<----------DOF2       <---------MYB52(1)  ------->TEIL       --------->GLK1(1)   tgcgtttctaccatggcaataaaattctttatccaagtaggagcctctgttttgtcgttaagaagatgaatccaaacacttcttgagaaatcatcaacaa  6033800                                               ----------->RAV1(1)                                            --------->PCF2                                            --------->ANAC58                                            --------->ANAC58                                           ------->TEIL                                           --------->SPL7                                        --------->ANAC58                                        --------->ANAC58                                       --------->SPL1(2)                                       --------->SPL7                     ---------->DOF2 <---------SPL7              <---------ZAT2        <------MYB83              --------->At4g35610   <---------DEAR3(2)           <---------ANAC58         <------MYB46(1)           <---------ANAC58        --------------->AtSPL3                  <---------ANAC58 --------->GT1--------->ZAT2       <---------------AtSPL3         --------->At4g35610 <---------AHL20(2) -------->GT1 <---------At4g35610  --------->MYB59            ------->TEIL <---------ANAC58 -------ZAT6<---------ZAT18        --------->MYB46(2) --------->YAB1   ---------->DOF2<---------YAB1   gtgttaaaaaatagcgagctccacaatgcgaaattgttcggtacggaccccacaaatcagaatgaatcaactcaaaagcttgtgtagttttattgatact  6033900                            <------NtERF2                          <---------ANAC58                          <---------ANAC46                     <---------ANAC58             ------>ZmHOX2a(2)            --------->CCA1(2)            <------ZmHOX2a(2)           --------->ARR11(3)           --------->ARR14(2)           <---------ARR11(3) <------NtERF2                --------->RVE1(1)           <---------ARR14(2)--------->LBD16          --------->YAB1           --------->AGP1 <---------ANAC58      <---------DAG2          <---------GLK1(1)<---------LBD16      <----------DOF2          --------->GLK1(1)------>NtERF2     --------->ANAC58     --------->DAG2  <---------AtLEC2        --------->ANAC58    ---------->DOF2  <---------ANAC58        --------->ANAC46 --------->YAB1  ----------->GT1   aatcggaaaaggagatctagtttgcttggcgcggagacagacatcacacgctttattcaaaatatcagaacgaattgaaactgtaacattcttaagagag  6034000                  <---------GLK1(1)                  --------->GLK1(1)              --------->ANAC58                    <---------ANAC58              --------->ANAC46                    <---------ANAC58              --------->ANAC58                    <---------bZIP60(2)              --------->ANAC55(1)            <---------At4g35610             <---------LBD16            --------->At4g35610           <---------REM1(2)            <---------ZAT2         --------->ZAT14                <---------At4g35610                       <---------ZAT2         <---------ZAT14              <---------ALFIN1                     --------->ZAT2         <---------ZAT18            ----------->RAV1(1)                    <---------At4g35610         --------->ZAT18         --------->bZIP60(1)                       --------->At4g35610  ----- --------->MYB46(3)              <---------bZIP60(1)           <---------ZAT18------>NtERF2    ------ <---------MYB111(2)          --------->ICU4 --------->At4g35610   ------>ZmHOX2a(1)    <---------MYB52(1)   ccaacaacttgtgcacacggatgtcccatgcgatgatgccacagctcatatgacttgtcatcttgtgtcctcaccgatgctgccaactccgttttgcaaa  6034100                                         <-----------GT1              --------->ANAC58                                      <---------ICU4                  --------->ANAC58                                     --------->ICU4                   --------->ANAC46   <---------GLK1(1)                                 ----------->GT1                   <---------SPL7  <---------ANAC46                                ----------->GT1               --------->MYB46(3)   <---------ANAC58                     xxxxxxxxxxxxxxxx>smallRNA(i)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <xxxxxxxxxxxxxxxxsmallRNA(i)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     x                    xxxxxxxxxxxxxxxx>smallRNA(i)        --------->ANAC58           <---------ANAC58 -            --------->ANAC58 <---------ANAC58           --------->ANAC46       <---------ANAC58   xxx            --------->ANAC58 <---------ANAC46           --------->ANAC58       <---------ANAC58 <----            --------->ANAC46 <---------ANAC58          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    -----     --------->ZAT6 <xxxxxxxxxxxxxxxxsmallRNA(i)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---- ---->DAG2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->GLK1(1) ---->DOF2*TSS     <xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<------ZmHOX2a(1)   agtagtagcactacaagaaaacagtcgttttgcgagggaaaaattactcgctaatccctcgcaaacagccatacgcgagggacttgcgaggaaatcaagt  6034200               --------->ANAC46                                                       <-----------RAV1(1)               --------->ANAC58                                                      <------------AtMYB77               --------->ANAC58                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                        --------->HSFB2a(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         <---------------AtSPL3 <---------ANAC58 --------->ANAC46               --------->RAP2.6(2)                 >>>>>>>ZML2 --------->ANAC58  <-- --------->ANAC58           --------->DAG2                          <---------HSFB2a(2)    <---------ANAC58 --------->ANAC58          ---------->DOF2                       --------->AGP1 --------->ANAC58  --- xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----->ZmHOX2a(1)     ----------->GT1      --------->ANAC46    xxxxxxxxxxxxxxxx>smallRNA(i)<---------ANAC46 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----ARR14(2)<-----------------AGL1       --------->ANAC58--------->MYB46(3)   --------->ANAC46 <--- ---->ARR14(2)<---------HSFB2a(2)   <---------GLK1(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---- -----ARR11(3)--------->HSFB2a(2)   --------->GLK1(1)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ------   tcctcgcaaatcgcttctcgcaaatggtaaaaagtcgcaattccctcgcaaaacacatccaactacagttctagtacttccctcgcaactgttgcgagag  6034300        <----------DOF2   --------->ANAC58                  <---------ANAC58     --------->GLK1(2)    --------->ANAC58                  <---------ANAC58    xxxxxxxxxxxxxxxx>smallRNA(i)                         <---------TOE2(3) -------GLK1(1)        --------->STY1(2)             --------->YAB1 ------>CCA1(2)        <---------STY1(2)            <---------YAB1                           -------- ------ARR14(2)       --------->ANAC58             --------->AHL20(2) ----------->GT1     ----------- ----->ARR14(2)       --------->ANAC58         --------->LBD16 --------->ATHB12   <xxxxxxxxxxxxxxxxxx ----->ARR10 <----------DOF2                   ------>ZmHOX2a(1)      <---------MYB46(3)<-----------GT1   atttgcgattcttttctttctgcctagcaagtattttgcaactaatttcctgatataataaggcttgattagtggttaattagactctaattacctggtt  6034400                                                                                            ---------                                                                                            <--------HAHB4                           --------->ARR14(2)                                               <--------                           <---------ARR14(2)                                    --------->At4g35610                       --------->YAB1                                            <---------At4g35610                   <---------AHL20(2)            <---------ANAC58               --------->GLK1(2) --->GT1        ----------->GT1--------->ATHB12  <---------ANAC58        >>>>>>>>>TBF1     <---------YAB1 >RAV1(2)  <-----------GT1<------ZmHOX2a(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ICU4 xxxxxsmallRNA(le3)--------->AHL20(2)      <---------YAB1  ---------->DOF2  >>>>>>>>>TBF1--------->YAB1   aattagactctaattacctagttaattaggatttgattagagattatttttgcttcttaaataaagacacaagaagaagaagaagctgaaattatcatta  6034500                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                     ----------->GT1                               <-                                                    --------->ANAC58                         --------                                          ---------->DOF2                                 --------->YAB1                                       --------->HSFB2a(2)      ---------->DOF2          <---------YAB1                             <-----------GT1        --------->ANAC58                   --------->YAB1 >YAB1                <---------ATHB12 <---------HSFB2a(2)---------->DOF2             --------->ICU4- -ICU4         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) --------->ANAC46               xxxxxxxxxxxxxxxxxx   tctaaaatgtatactacaatgccaatgtttgaaaccattttctaaaaagattacaaggaaaaaagagaaagacaatgttctcaaaatactgatgataaag  6034600  Previous    Next  AGI:  At2g14220.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.6e-167 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element) Range:  from: 6031142    to: 6034110    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g14230.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-119 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 6034581    to: 6036775    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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