Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <---------ALFIN1 <----------DOF2          --------->KAN4(1) --->O2     <---------ZAT14 ----ANAC55(2)            --------->HSFC1(2) --->ANAC55(2)   <-----------HVH21 ----O2     <---------ZAT2<---------HSFC1(2)                  <---------ARR14(2) ----TGA1a  <------NtERF2 --------->HSFB2a(1)                 --------->ARR14(2)      <---------MYB46(3) ->ZAT14    --------->ZAT2<---------HSFB2a(1)          <---------ALFIN1              <--------P --ZAT14  <---------ATERF1(2)                       <-----------GT1     ---------->DOF2        <----- >WRKY18(1)------>NtERF2  <---------KAN4(1) --------->CCA1(2)<---------CCA1(2)     --------->YAB1 --HVH21  --------->ATERF1(2)   --------->ZAT14  <---------GLK1(1)    <---------HSFB2a(2)  ----------   tgtctttgtatgccagcactgtcacagaacgttctgaactcttgagataagaattctccacccctatctgttcggaaagtcttaatggtagttcccaatt  6019400                                                                                           --------->WOX13(1)                                                                                        --------->TOE2(3)                                                                                       --------->YAB1                      <---------ANAC58                                                --------->ICU4       --------->YAB1 <---------ANAC58         <----------DOF2               <---------ANAC58   <----       ------->GAMYB  <---------ANAC46         <---------DAG2                <---------ANAC58 <------      --------->MYB46(3)          ---------->DOF2         XXXXXXXXXXXXXXXXXXXX>MIR860 <---------ATHB12 ----DAG2 --------->YAB1       <-----------HVH21    <----------DOF2          <---------ANAC46 ------- ------->AGL3       --------->ARR11(3)        <---------DAG2        ----------->RAV1(1)<---------ICU4   tttgttcaaccatcatcttgaatgtcttgaatttgtcaaaggcttctcccttttctttcaagagaatagaccacatatatcgtgagtaatcatcaattaa  6019500                                                                                   <---------ANAC46                                                                                   <---------ANAC58                                                                                   <---------ANAC58 <                                                                               <---------MYB46(3) ---                                                                               --------->ABI4(2)  ---                                                                              <---------AtMYB61  ----                                    <---------ARR11(3)                        <---------DEAR3(1) ----                                    --------->ARR11(3)         <-----------RAV1(1)<---------MYB46(3)< ------ID1                      ---------->DOF2           <----------DOF2     --------->ALFIN1   ---- ---ICU4                --------->YAB1          --------->AHL20(2)      <---------REM1(2)    <------- -->YAB1                --------->AHL20(2)      <---------AHL20(2)   <---------------AGL15   --------   gacaaaaacatacctcttatgtgcaattaaaacacaaaggtctccatgaattaattcaagcttttgtgttgctctatacggtggtgcttgtggagaaacc  6019600    <---------ANAC58    <---------ANAC58 ---------DAG2 --->NtERF2 ------>LBD16                  <-------MYC2 ----->ANAC58                  ------->MYC3                                                       <-- ----->ANAC46           ---------->DOF2                      --------->ANAC58                    ---- ----------DOF2     --------->ICU4    <----------DOF2        --------->ANAC58            ------->MYC3 ----->ANAC58  --------->ANAC46------->MYC2    >>>>>>>>>>AtTINY2                         <-------MYC3 --GLK1(1)     --------->ANAC58<-------MYC3    <---------ETT(2)                 <----------DOF2  <--- ->GLK1(1)     --------->ANAC58<-------MYC4    --------->ETT(2)    <---------YAB1  <-----------GT1---   cgccttacttgttttccaagtaaacatgaagcacatgtttctttctctatcgacatcaatggcaagcttatgactaattcttctttaaccatatgcttca  6019700                             --------->ANAC46                             --------->ANAC58                             --------->ANAC58                                      <-------PIF5                           <---------ANAC58                                        ------->PIF5                           <---------ANAC58                                       <---------At4g35610                           <---------AtLEC2                                       ----------->RAV1(2)                          <-------TEIL                    <---------AHL20(2)      <---------ZAT2      --------->ANAC46<------------AtMYB77                --------->AHL20(2)      --------->At4g35610      --------->REM1(1)------->GAMYB                <---------ALFIN1             ------>NtERF2 -------ICU4         ------>MYB83              --------->ANAC58            <---------ICU4 ----->ICU4          ------>MYB46(1)           --------->ANAC58          <----------DOF2 ------YAB1          -------->P                --------->ANAC46         --------->YAB1 ------>ATHB12      --------->MYB52(1)        --------->WOX13(1)  --------->ZAT6*TSS       <---------AtLEC2   tgatttctacaccaatgtgtcccaaccgtgcatgccattttgtcgagtcactcaacacatttatatgaacactagcattatggcacctgctatgcaggga  6019800                                                                                                  <--                                                                                                  ---                   ---------->DOF2                                                           --------                <---------AHL20(2)                                                           --------            <---------AHL20(2)                                                               --------           <---------AHL20(1)                                            ----------->GT1     --------           <---------ARR11(3)                             <---------AHL20(2)      <------ZmHOX2a(1)           --------->ARR11(3)                        <-------TEIL    <---------ARR14(2)      <-------   cttagttttagtatatattttaaaagataacaaatatcaaatttagttatctatatacatatatttgaacaaatatggataataggaattaactcaagta  6019900        --------->ATHB12                         <------MYB83       <---------YAB1                          <--------P     <---------ICU4                           <-------GAMYB  --------->YAB1                             <------MYB46(1)                                       -- -------MYB52(2)                             <------MYB83                                         <xx ------>MYB46(3)                             <---------MYB46(3)                             ------>ZmHOX2a(2) ->ANAC58                       <------ZmHOX2a(1)<------MYB46(1)                           <------ZmHOX2a(2) ->ANAC46                 <-------TEIL      <---------AtMYB61--------->ARR14(2)           --------->MYB52(1) ->ANAC55(2)          <-------TEIL       --------->ARR11(1)  <---------GLK1(2)         xxxxxxxxxxxxxx ->ANAC58        --------->AHL20(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --ANAC55(2)     <---------AHL20(2)    ----------->ARR10     <---------ARR14(2)    xxxxxxxxxxxxxxxxxx   acaaacataatgactgaatttatatacgtacagaggaaacatagatttggttggatattagcagtttctcttgttagccaatagccataaacgatcggat  6020000                                                              <---------HSFB2a(2)                                                           --------->ZAT6                                                        --------->ZAT14          <---------YAB1                                <---------ZAT18 ----->TEIL                                       <-------TEIL--------->HSFB2a(2)       ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <---------AHL20(2)                   <---------YAB1  --- xxxxxxxxx>smallRNA(s2)                      --------->AHL20(2)                   --------->AHL20(2) xxxx>smallRNA(le3)                    --------->LBD16  --------->ZAT18         --------->YAB1 <-----   gcacataccattacaattccaaaacaatcttctctatttcccccaaaataaatacatgtgaactctagaaattttgaatcacttataaataaaagtctgt  6020100                                                         --------->ARR14(2)                                                         --------->ARR11(3)                                                         <---------ARR14(2)                                                       <---------ARR11(3)                                                       --------->ARR11(3)                                                <-------GAMYB                                               <---------ANAC46                                               <---------MYB46(3)                                         --------->GLK1(2)                                        <---------ARR11(3)                           --------->TOE1(3)                                        --------->ARR11(3)                        <-----------GT1          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)---------->ID1            <---------AtLEC2    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------GLK1(2)<---------ARR11(3)   <---------AHL20(2) ------->DOF2           <XXXXXXXXXXXXXXXXXXXXMIR835-5P <---------AHL20(1)     --------->AHL20(2) ------HVH21          --------->YAB1   <---------RVE1(1)<---------CCA1(2)------->TEIL--------->TOE2(3)   caaagagatagaccaaaatatcaataagaaatatatgtaagagattttgtcgttgaatatatctgcatttgtatgcatgtttaattaccttcaattgcta  6020200                                                                                                   <-                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                             <-------                     ------>ZmHOX2a(2)                                                       --------              --------->ICU4                                                     ---------->DOF2-----           <---------YAB1                            ----------->GT1        >>>>>>>>>TBF1    --------         --------->YAB1                       ---------->DOF2        ---------->DOF2         <-------   atccagtttaagtataattttgatccaaattccagcaaatagtatctcaaaagaacagcaaatagtatctcaaaagaagaagaaaaagaaactaattaat  6020300  Previous    Next  AGI:  At2g14200.1    Description:  transposable element gene. copia-like retrotransposon family, has a 3.0e-133 P-value blast match to gb|AAO73523.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family) Range:  from: 6017019    to: 6019780    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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