Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     ------>ZmHOX2a(1)                             ----------->HVH21                ------>ZmHOX2a(1)     --------->WOX13(1)       <---------ANAC58         --------->HSFB2a(1)    <---------ANAC55(2)         <---------GLK1(2)         --------->HSFC1(2)     --------->ANAC55(2)        <---------At4g35610         <---------HSFB2a(1)    <---------ANAC58           --------->At4g35610         <---------HSFC1(2)     <---------ANAC58       --------->AtLEC2             <---------YAB1     <xxxxxxxxxxxxxxxxsmallRNA(s)   <---------YAB1    ------>ZmHOX2a(1)             ------>ZmHOX2a(1) --->MYB59 <----------DOF2 ----------->GT1    ------>ZmHOX2a(1)<---------ANAC58    --------->TOE2(3)   gtctgaggggaagctttcctccttcaaaatggttacttatcaatcttcctaatgtccttgcagatgcttgacgatgactaacattccttattgaagagtc  5981000                                                 ------>MYB83                                                 ------>MYB46(1)                                               --------->MYB46(3)                                               <---------ALFIN1                                               --------->AtMYB61                                               <---------MYB55(2)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                           ------>ZmHOX2a(2)                                           --------->MYB46(3)                                          <------ZmHOX2a(2)  --------->ANAC58                                         --------->ARR14(2)  --------->ANAC58                                     <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->YAB1         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->ICU4           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         <------       <---------YAB1  --------->LBD16   <---------ARR14(2)  --------->ANAC46         <---------ICU4   acaactgtgatgactaacatacttccgaataacataactctcggatccaccagccctagttgcacgtagtctccaactagagttttcatcaatacaatga  5981100                ------>ZmHOX2a(2)               <---------At4g35610               <------ZmHOX2a(2)                                    <---------O2               --------->CCA1(2)                                    --------->O2              --------->AGP1                                        ----------->GT1              <---------AGP1                                        <---------ANAC46              <---------ARR14(2)                                   <xxxxxxxxxxxxxxxxsmallRNA(s)              --------->ARR14(2)                               --------->ANAC58              --------->ARR11(3)                               --------->ANAC58              <---------ARR11(3)                              <---------LBD16             <---------GLK1(1)                            ----------->ARR10         <-----------HVH21                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->O2                             <---------ZAT14--------->LBD16             <--------  --------->KAN4(2)    <-----------GT1---------->DOF2 --------->ZAT14 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---ATHB12  ----------->ARR10    ------->TEIL   <----------DOF2--------->ANAC46       <----------DOF2   agaacatacctcgtgagatctgatttcactgtatgaaactcaaagttgtgcttcactgcaaacatccgcaacgtgaataccatttcatctttgtctttga  5981200                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                               ------                                                                                               <-----                        <---------ICU4             <---------ARR14(2)                       <-------TEIL                     --------->YAB1   --------->At4g35610                           -----------------                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <---------ARR11(3) --DOF2       ---------->DOF2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->YAB1    --------->CCA1(2)   aaattttttcaataaacaaagaatcaacatcacttagaccagttgaaaacgcagaactagaatactgttgatcaagaatactagatgttttagatacaca  5981300                                                                           --------->ATHB12                                                                           <---------ICU4      --------->YAB1                   ---------->DOF2                    --------->ICU4      <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->AHL20(2)                    <---------YAB1     <---------ATHB12     --------->ZAT2                                <---------ICU4 ----->ANAC55(1)          --------->At4g35610               *TSS       <---------ATHB51 ----->ANAC46             <---------At4g35610   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               - ----->ANAC58             <---------ZAT2        --------->TOE2(3)--------->TOE2(3)                 -- ----->ANAC58    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->TOE2(3)--------->YAB1 --------->ARR11(3) --->ANAC46     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->YAB1   <---------AHL20(2)     ------- ----ALFIN1------>ZmHOX2a(1) ------>NtERF2      --------->TOE1(3)--------->YAB1        <---------ARR11(3) ------>TaNAC69(2)      <---------DEAR3(1)    -------->P  --------->WOX13(1)           xxxxxxxxxxxxxx   cgcctcaataatcctagaggttaacctcggctgccaaaataaaaagcttacctcaaacatcaatctatcttaaataatgattttacaaggatttttaaaa  5981400                   --------->ATHB12                   <---------ICU4                  --------->ICU4                  <---------YAB1                <---------ICU4                --------->YAB1               <---------ICU4                -------->HAHB4              <---------YAB1             --------->YAB1           ---------->DOF2                               <---------ARR14(2)          --------->TOE2(3)    <---------RVE1(1)                                    --------->ARR14(2)          --------->TOE1(3)   <---------GLK1(2)                                    <------ZmHOX2a(1) ---------->GT1<---------ATHB51<---------CCA1(1)  <---------ANAC55(2)      --------->ANAC58 --------->GT1 --------->ICU4 <---------ARR11(3)  ----------->RAV1(2)      --------->ANAC58 --->DOF2----------->GT1      --------->ARR11(3)<-----------GT1        --------->YAB1 xxxxxxxxx>smallRNA(si3)<-----------GT1   <------ZmHOX2a(1)     <-------TEIL   ---------->DOF2<------   ggggtttaaaaacgttaataatgattttacaagattttttaaaaggattattacctgagtagtagatgcagaatgagaagcaaaaggatttgaagtcgtc  5981500                                                                             --------->ATHB12                                                                             <---------ICU4                                                                            <---------YAB1                                                                            --------->ICU4                                --------->ICU4                            --------->YAB1                                <---------YAB1                            <---------ICU4                              -------->HAHB4                              -------->HAHB4                              --------->YAB1              ----------->GT1<---------ATHB51                              <---------ICU4 <---------ARR11(3)        --------->YAB1                             --------->ICU4  --------->ARR11(3)     --------->TOE1(3)                 <---------ATHB12<---------ICU4          ----------->GT1 --------->ICU4             -      --------->YAB1         <---------ATHB51xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxx   ----------->GT1       <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->TOE2(3)    --------->ARR11(3) -----HVH21    --------->WOX13(1)--------->ATHB12   ---------->DOF2----------->GT1       <---------ARR11(3)   ccagcctgtaataaactcaatcactgacttaataatgattttacaaggatttttaaaaggggtttaaaaacgttaataatgattttacaaggatttttaa  5981600                                                                                           --------->ATHB12                                                                                          <---------YAB1                                                                                          --------->ICU4                                                                           <---------ATHB12<---------ICU4                                                                      --------->YAB1    <---------ICU4               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  <---------ICU4       -------->HAHB4               <----------DOF2                                    --------->ICU4        --------->YAB1         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ICU4        ----------->RAV1(2)               <---------ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->ARR14(2)    --------->YAB1         <---------ATHB51 -------->ATHB12                         <------ZmHOX2a(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(fl3)         ---------->DOF2         ----------->GT1       <xxxxxxxxxxxxxxxxx   aacgattagtacctgagcattagggacagaatgagaaacaaaaggatttgaagtagtctcagcctgtaataagcacaatcactgacttaataatgatttt  5981700                                                  ------->GAMYB                                                <---------At4g35610                                                --------->At4g35610                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           --------->At4g35610                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   --------->ZAT6    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        <---                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  --------->ANAC58                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           --------->MYB52(1)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          xxxxxxxxxxxxxxxxxxxxxx              --------->YAB1        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->YAB1     xxxx   <---------ARR11(3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <<<<<<<<<ARR2 --------->ANAC58   --------->ARR11(3)              xxxxxxxxxxxxxxxx>smallRNA(i)          <---------ATHB12      ------ xxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<-----------HVH21   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   acaaggatttttaaaattataacacaagaaggttattgaaaaacctgctcaactgtcacagaaatttgttctacaatcaaacataactgaagcaatcctc  5981800                                                                                        <xxxxxxxxxxxx                                                                                  --------->REM1(2)                                                                                 --------->ALFIN1                                xxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->O2                              --------->At4g35610                              <---------O2                              <---------ZAT2                                   <---------ANAC46         --------->GLK1(2)    --------->ZAT2             <------ZmHOX2a(1)     <---------TGA1a        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       ---------->DOF2             ====================== ------ALFIN1                 <---------At4g35610  ======================================bZIP_DOF x>smallRNA(fl3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <---------REM1(1)   -------- xxxxxxxxxxxxxxxxxxx>smallRNA(se3)           ------>ZmHOX2a(1)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) >ZmHOX2a(1)        ---------->DOF2         <---------MYB59<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <--   cactctgtgagaatttgtgcataaaagttgcaagctgtctatcgttcctaatataaagaggatgagattgtatggttgtagacgtggagactaacttgta  5981900  Previous    Next  AGI:  At2g14150.1    Description:  transposable element gene. Mutator-like transposase family, has a 1.5e-80 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 5979395    to: 5981360    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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