Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <------MYB46(1)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                      <---------ICU4                                                                      --------->ATHB12                                                                      --------->YAB1                                                                     --------->ICU4                                                                    <---------WOX13(1)                                                                 <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                          <-----------GT1  <------MYB83                                                        <---------ANAC58  <---------TOE2(3)                                                        <---------ANAC58  --------->MYB59                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->MYB52(2)                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<-----------GT1     <    ------>ZmHOX2a(1)               --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxx    xxxxxxxxxxxxxxxx>smallRNA(i)  <----------DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------    <----------DOF2 --------->AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx ->GT1   ------>ZmHOX2a(1)       <---------DAG2xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-------TEIL<xxx   aatgtcctttcctgaaggccattttaaaaactgccccttttaatatggcaaatgactgtcttaccctctgaatgattaggtttcacgttcgtttcacaaa  5967500                                                                                                 <---                                                                                                -----                               ------>ZmHOX2a(1)                                                <xxxx              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               ------              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------HSFB2a(1)          ------>NtERF2            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------HSFC1(2)          ----------->HVH21            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->HSFB2a(1)         --------->DEAR3(1)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              --------->HSFC1(2)          --------->At1g77200            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <-----------ARR10           --------->RAP2.3(1)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------ARR14(2)       xxxxxxxxxxxxxxxx           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <------NtERF2               <xxxxxxxxxxxxxxxxsmallRNA(i)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         ------>NtERF2                <xxxxxxxxxxxxxxxx         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------ATERF1(1)         <xxxxxxxxxxxxxxxxx     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------DEAR3(1)          <xxxxxxxxxxxxxxxxxx  ---------->ID1      ---------->ID1                  --------->DEAR3(1)         xxxxxxxxxxxxxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ATERF1(2)        xxxxxxxxxxxxxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                --------->ATERF1(2)       <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <---------LBD16            --------->YAB1<XXXXXX <-----------------AGL1    xxxxxxxxxxxxxxxx>smallRNA(i)--------->LBD16         <xxxxxxxxxxxxxxxxxxxxx <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->YAB1 --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->ANAC46<XXXXXXXXXXXXXXXXXXXXXMIR2933A/B<------NtERF2 xxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i) --GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxxxxxx >smallRNA(se3)      --------------------->WRI1      --------->ATERF1(1)     <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(i)<-----------GT1--------->ANAC46xxxxxxx   cttcttcgttttggcacaaacttcttcgttttcctctccgatttcactcaaaatcgccggcgaattttctctccgatttcactcaaaatcgccgacgaat  5967600                                                                    <-----------GT1     xxxxxxxxxxxxxxxx>smallRNA(i)                                 --------->HSFC1(2)                - ------>ZmHOX2a(1)                                                --------->HSFB2a(1)              <X --------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <---------HSFB2a(1)           <---- ---->GLK1(1)--------->ANAC46       ------>ZmHOX2a(1)        <------NtERF2                     ------ xxxxxxxxxxxxsmallRNA(i)        <-----------GT1             ------>NtERF2                     ------- ->TEIL     <xxxxxxxxxxxxxxxxsmallRNA(s)                   --------->DEAR3(1)                 ------- xxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxsmallRNA(i)--------->At1g77200                ------- xxxxxxxsmallRNA(se3)    xxxxxxxxxxxxxxxx>smallRNA(i)      ----------->HVH21                 -------- xxxxxxsmallRNA(fl3)     ------>NtERF2                    --------->RAP2.3(1)            <xxxxxxxxxxx xxxxsmallRNA(si3)       --------->MYB52(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxx xxx>smallRNA(si3)      --------->DEAR3(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxxxxxxxxxxx xxx>smallRNA(le3)     xxxxxxxxxxxxxxxx>smallRNA(s)     ------->GAMYB                  ---------->DOF2 XXXXXXXXXXXXXXXMIR2933A/B     --------->GLK1(1)  --------->YAB1  <---------HSFC1(2)   <xxxxxxxxxxxxx xxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->MYB46(3)             xxxxxxxxxxxxxxx xsmallRNA(s2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxx xsmallRNA(s2) --------->YAB1  <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B  ------->TEIL         xxxxxxxxxxxxxxx xxxxxxxxxxxxxxx>smallRNA(le3)------->TEIL<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ttcctctccgatttcactcaaaatcgccaacgaatttcctctccgatttcactcacaatcgccgacgaattttctctctgagaaaccccaaaatcgccga  5967700                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       ----------->HVH21                                                                                      --------->DEAR3(2)                                                                                      ------>ZmHOX2a(2)                                                                                      xxxxxxxxxxxxxxx                                                                                     --------->CCA1(2)                                                                                    <---------ARR14(2)                                                                                    --------->AGP1                                                                                    --------->ARR14(2)                                                                                  ----------->ARR10      ------>ZmHOX2a(1)                                                    --------->GLK1(1)  <-----------GT1                                                     --------->LBD16<------ZmHOX2a(2) <xxxxxxxxxxxxxxxxsmallRNA(i)             <------ZmHOX2a(2)         <---------LBD16xxxxxxxxxxxxxxxx>smallRNA(s) --------->GLK1(1)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxsmallRNA(s) ------>TEIL                             --------->ARR11(3)    <xxxxxxxxxxxxxxxxsmallRNA(i) XXXXXXXXXXXXXXXXXXXXMIR2933A/B          <---------ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --NtERF2                               <---------At4g35610 --------->ANAC58    xxxxxxxxxxxxxxxx>smallRNA(i) >NtERF2                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ARR11(3)<xxxxxxxx -->At1g77200                       <xxxxxxxxxxxxxxxxsmallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(s) ---->HVH21                         xxxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(s)  <---- -->DEAR3(1)                       --------->ARR14(2)       --------->ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(i) ->RAP2.3(1)                       <---------ARR14(2)   --------->ANAC58  <---------ARR11(3)--------- xxxxxxxxxxxxsmallRNA(se3)        ===============HOX2a_HOX2a<xxxxxxxxxxxxxxxxsmallRNA(s)    --------- xxxxxsmallRNA(i)                 <------ZmHOX2a(1)     --------->ANAC46  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <- xxxxxxxxxxsmallRNA(si3)     ----------->HVH21          --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxx>smallRNA(fl3)    --------->At4g35610       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   <xxxxxxxxx xxxxxxxxxxxx>smallRNA(fl3)<---------At4g35610       --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxx   cgaatttcctctccgataaacatgttcttcgctgaaggattcagatcatttctctacgacgcaaacaatccccagagatatcgatagatccgacggtaac  5967800                                                  ----------->TGA1                                                  ----------->HVH21     <---------YAB1                              xxxxxxxxxxxxxxxx>smallRNA(i)   --------->YAB1                                ------>ZmHOX2a(2)  <---------YAB1                                <---------At4g35610 <-----------TBP                                --------->CCA1(2) xxxxxxxxxxsmallRNA(le3)                        <------ZmHOX2a(2) xxxsmallRNA(s)                                --------->AGP1 x>smallRNA(s)<---------AHL20(2)               <---------AGP1                                  ------ xxxxxxxxsmallRNA(s)                           --------->ARR11(3)                              <----- --------MYB.PH3(1)                   <---------AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >DOF5.7(2)  <-----------TBP         --------->AHL20(2)      --------->YAB1       *TSS    ----------- >At5g28300  --------->AHL20(2)      <-----------TBP        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------MYB52(1)         <---------AHL20(2)   <---------ARR11(3)            --------->At4g35610   <- xxxxxxxsmallRNA(s)      <-----------TBP       <---------ARR14(2)            <---------At4g35610   <- xxxxxxxsmallRNA(i)      --------->AHL20(2)    --------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   cgtttttataatcgattttatagtcgattttatagtcgattttatagtagatctgacgctgtttcataacatgttttgcagatggattcagagagtgaaa  5967900        <---------ANAC58        <---------ANAC46             --------->GLK1(2)    xxxxxxxxxxxxxxxx>smallRNA(i)   <------ZmHOX2a(1)   <---------AtLEC2            --------->ALFIN1     --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <---------ARR14(2) --->GLK1(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------ARR14(2)          x ----GLK1(1)     --------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ARR14(2)        <-- >GT1   <---------ANAC58    --------->DAG2  <---------ZAT14         <---------LBD16       --------->DAG2 --------ANAC58  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          --------->YAB1             xxxxxxxxxxx --------ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)---------->DOF2   tccttgcattgcctgaacaaatctacagagaaggtgaggaatctattacactgggaaccgttcaacaatactcggattggaatttagttagtaaagtaga  5968000                                                                                                <----                                                                                                -----                                                   ------>ZmHOX2a(1)                            -----                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <----                                           <---------ANAC58          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                 <---------AHL20(2)     <---------MYB52(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <----------DOF2      <---------At4g35610<---------ANAC46     xxxxxxxxxxxxxxxx>smallRNA(i) -------- xxxxxxxxxxxxxxx>smallRNA(i)          --------->MYB52(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) ----ZmHOX2a(1)  --------->AHL20(2)  <-------TEIL<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    xxxxxxxxxxxxxx xxxxx>smallRNA(fl3)  <---------HSFB2a(2)  <---------ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <----   ggaagctttaggcgagtatttatttcagaagattagaagttcgtttcttggtcctctagttgaattgggaccaaaaatgaaggctaagaagggaatcaga  5968100         <---------ARR11(3)         --------->ARR11(3)   --------->LBD16                 ----------->GT1  --------->HSFB2a(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->HSFC1(1)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------HSFC1(1)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------HSFB2a(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------LBD16             <---------ZAT2                                         <---------ARR14(2) -----ARR14(2)               <---------At4g35610                                    --------->ARR14(2) ---->ARR11(3)               --------->At4g35610   <------ZmHOX2a(2)                ------>MYB83xxxxx ---->ARR14(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           ------>MYB46(1) -----ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->YAB1  --------->GLK1(2)  ----------->RAV1(1)  <------ZmHOX2a(1)     ----------->ARR10 <---------MYB52(1) xxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(s)  <----------DOF2<---------GLK1(2)--------->ARR14(2) -----GLK1(2)  --------->ZAT6--------->ZAT2  ---------->DOF2        <---------ZAT6--------->AtMYB61   ttttctggaaaaatctttcactatctcatgcagcagagagtgaaaacaaaaggatcaactctttggtttagagttgattctcaacctatccgtttctcct  5968200                                                               <---------ANAC46                                                            ------->GAMYB                                                            <-----------RAV1(1)                     <                                                          <---------At5g28300              --------->MYB52(1)                                                         --------->MYB52(1)        <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                         <-----------GT1       --------->ANAC58     <                          ---------->DOF2               <---------AHL20(2)     --------->ANAC58     <                    <---------ANAC55(2)                 --------->AHL20(2) <-----------GT1 <---------ARR14(2)                    --------->ANAC55(2)           --------->TOE2(3)    --------->ATHB12 <---------AtLEC2                    ----------->GT1           ---------->DOF2<-----------HVH21 --------->ANAC46   <xx xxxxxxxxxxxxxxxx>smallRNA(se3)  <-----------GT1  --------->TOE1(3)   --------->ICU4  <xxxxxxxxxxxxxx   tgagagagttctatctcacaacaggtaataaagttttacaatcgtttttaaagcttaattaactgtcgtagaatgatttacaaggcatttgcataactgt  5968300           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------ANAC58 ---------ANAC58 ---------ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <----------DOF2          --------- xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <-----------HVH21          ---------->DOF2             --------->YAB1 xxxxxxxxsmallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ---------->DOF2--------->TOE2(3)   ttgcgtagtttacaatcgtttttaaaacataagtaagtgtcatagataatttacaagggattttaaaagcttttaaaaggggtttacttcattaacaatc  5968400  Previous    Next  AGI:  At2g14130.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) Range:  from: 5967882    to: 5972527    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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