Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------YAB1                                                                         -----    ----------->GT1                                                                      <---------AHL20(2) ------->AHL20(2)                                                                      <---------AHL20(2) ----------->AGL15                                                                     --------->AHL20(2) ------HSFB2a(2)                                                                     --------->AHL20(2) ------------AGL15                                                                 --------->AHL20(2) ----->HSFB2a(2) --------->AHL20(2)                      <---------YAB1            <---------AHL20(2) -------------AGL2                            <---------AHL20(1)                 <---------AHL20(2) ------------>AGL3                            --------->AHL20(1)    --------->ATHB12 <---------AHL20(2) -------------AGL3                            --------->ARR11(3)   <---------YAB1--------->AHL20(2)-- ------------>AGL2                ----------->GT1     <---------AHL20(2)       --------->AHL20(2)  <-   tataaatagttataaatgtttatatagtatttgatatagttaaaagaatattttgtataatttttgtttacgattgaacatatatatatatatatatgta  5931900                            ----------->GT1                           <---------TOE2(3)                       <---------ICU4                      --------->ICU4   <---------AHL20(2)<---------AHL20(2)  <---------AHL20(2) <---------AHL20(1)                     <---------YAB1                         xx  --------->AHL20(2)--------->YAB1                    --------->ICU4 <-----------GT1            xxxxx -->TEIL      <---------AHL20(2)            --------->YAB1--------->YAB1                     ------>ZmHOX2a(1) ------->AHL20(2)  <---------AHL20(2)    <---------ICU4  <---------YAB1 ------->GAMYB        <xxxxxxx --------AHL20(2) --------->AHL20(2)  --------->YAB1 <----------DOF2 --------->MYB52(1)     <--------   tttttttaatagacattttatataatatttatgtaaaaaatcatatttataatgtctttattataaacgcttaaccgtctaaaattatctatgtcctaac  5932000                xxxxxxxxxxxxxxxx>smallRNA(i)            <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->HSFB2a(2)      >>>>>>>ZML2       <------ZmHOX2a(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <---------TOE2(3)      <---------HSFB2a(2)                                            ---------->DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------TOE2(3)      --------->AHL20(2) xxxxxxxxxxxxxxxxx>smallRNA(si3)           ----------->HVH21    --------->AHL20(2) xxxxxxxxxxxxxxxsmallRNA(fl3)        <-----------GT1        <---------YAB1                     ------ -MYB59   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->MYB52(1)  <---------AHL20(2)             <-----   taagcgttctaggcgctaggcattggatcactgtccgtttaacgcctaacgttttcttgaatactattaattaaagtttttttcaaaaaaaaaacatttt  5932100                                            --------------->AGL15                                            <---------------AGL15                                           ----------------->AGL3                                           <-----------------AGL3                                           ==========================================================MADS_MADS                                           ----------------->AGL1                                           <-----------------AGL2                                       --------->HSFC1(2)                                       --------->HSFB2a(1)                                       <---------HSFB2a(1)         --------->CCA1(2)                                       <---------HSFC1(2)         <---------ARR14(2)                                   --------->ANAC58               --------->ARR14(2)                                   --------->ANAC46             --------->ANAC58                                   --------->ANAC58             --------->ANAC58             <------ZmHOX2a(1)        <-------TEIL         --------->CCA1(1)               ------>MYB46(1)             ---------->DOF2   --------->AHL20(2)        --------->RVE1(1)               -------->P                --------->AtLEC2   <---------AHL20(2)    --------->AHL20(2)----------------->AG --------->ANAC46     --------------->AGL15 --->AHL20(2)          <XXXXXXXXXXXXXXXXXXXXMIR835-5P        ------>MYB83            <---------AtLEC2 ----AHL20(2)        ---------->DOF2 <---------ARR11(3) <---------ARR14(2)           <---------------AGL15   tttaaaaaaattcatttcgaaactaaagaaaatatccaagaaatttccaaaaatggtggaacctacacgatatggttcacatattttccatgaaaggata  5932200                                  --------->ALFIN1                                <---------ANAC46                                <---------ANAC58                                <---------ANAC55(1)                                <---------ANAC58                           <--------ATHB1                           <---------ICU4                           --------->YAB1                          <---------ATHB12        --------->ZAT6                   --------->ANAC58           ------>ZmHOX2a(1)               ------>ZmHOX2a(2)                   --------->ANAC58  ----------->GT1                        <---------ARR11(3)        <----------DOF2   <---------ATHB51    <----------DOF2       *TSS    --------->ARR11(3)     <-----------GT1  ------------>CBF       --------->TOE2(3)  ---------->DOF2   --------->REM1(1)   actattttgacttttctcatcacgctcaataatagcgtgttgttaatcctttactctatctctcttcaaagctctattgatcttacatcttctctctatt  5932300                                                                 <---------AHL20(1)                                                                 --------->AHL20(2)                                                                 <---------ARR11(3)                                                            <-------TEIL                                    <---------At4g35610  <---------ANAC58                                  <---------ANAC46       <---------ANAC58                             <-----------RAV1(1)        <---------------AtSPL8                     <---------ANAC58                   --------------->AtSPL8   ----------->GT1  ---              --------->ANAC55(2)<---------At4g35610<----------DOF2 <---------AHL20(2)            ---             <---------TOE2(3)<-------GAMYB       --------------->AGL15         <---------TOE2(3) ---            <-----------GT1  <---------MYB46(3)   <---------------AGL15  <---------YAB1   <---------ANAC58 --------->ICU4      <---------ANAC58         --------->ZAT14    --------->AHL20(1)       <---------ANAC58   gtagtaatggatttttacgttttccttgggactgttgctgctacgttcttcactcttttgggtacaatattttatatgatttatggaaaatttcgagtcc  5932400                                                                                                   <-                                                                                                   <-                                                                                                 ----                                                                                            ------->PIF5                                                                                            <-------PIF5                                                                                           --------->ANAC46                                                                                           --------->O2                                                           <-----------GT1                 <---------O2          <---------ICU4                    <---------ATHB12                              <---------LBD16          <-----------GT1                  --------->ARR14(2)                       <---------ZAT2 --       --------->YAB1              <---------At4g35610<---------ANAC46              --------->ZAT2---      <---------YAB1           ------>ZmHOX2a(1)      <---------ANAC58              <---------At4g35610 ------>ANAC58            <---------At4g35610    <----------DOF2                    --------->At4g35610 ------>ANAC46          <-----------GT1    <---------ARR14(2)                     <---------ALFIN1<-- ------>ANAC58      <<<<<<<<<TBF1--------->REM1(1)    <---------ANAC58           --------->LBD16<----   aagaaactataataactacttcttcttcacctcctacatctccccaatcttctttgtcttgtaaccagaaacacgatgtcttccccagcttccacggggc  5932500           <---------ICU4          <---------ATHB12                                                <---------YAB1    --------->ANAC58                                                      --------->AHL20(1)    --------->ANAC58                                                     --------->YAB1   <---------ZAT18                                                   <---------YAB1   --------->ZAT18                                                 --------->YAB1 --------ARR14(2)                                                <---------WOX13(1) ----------ARR10                                      ------>ZmHOX2a(2)  --------->AHL20(2) ------->ARR10                                 --------->DAG2  --------->ATHB12                 ----- ------->ARR14(2)                   ----------->GT1   =====================================HOX2a_HOX2a ------>At4g35610                  ----------->GT1   <---------------------WRI1     ================= -------At4g35610            <---------YAB1   ---------->DOF2 <-------TEIL<---------AHL20(2)    ===== -------RAV1(2)     <-----------HVH21    ---------->DOF2  <-------TEIL--------->YAB1<------ZmHOX2a(1)   agatgtgcgcaaatcatttctcagtcacattttgaaagagtttaaaagaaaagggatcgatacgttcattgataataatattgagaggagcaaatcgatc  5932600                            ====================================HOX2a_HOX2a                            ------>ZmHOX2a(2)                           =====================================HOX2a_HOX2a                           <------ZmHOX2a(2)                                                        <                          <---------AGP1                                                           --                          <---------ARR14(2)                                                      <--                          --------->ARR14(2)                                                <------MYB46(1)                          --------->ARR11(3)                                               <---------AtMYB61                          <---------ARR11(3)                                               <---------MYB46(3)                         <------ZmHOX2a(1)                                                 --------->MYB111(1)                   <---------ATHB12                                                        --------->MYB111(2)                 --------->WOX13(1)         <---------ANAC58                      ----------->HVH21<-              --------->ANAC58         <-------GAMYB     <------ZmHOX2a(1)      ----------------->AGL1 --------->HSFB2a(2) ---------->DOF2   --------->At4g35610                     ------>NtERF2<-------- <---------HSFB2a(2)--------->YAB1     <---------At4g35610                    <---------PCF2<------MYB83 ->ZmHOX2a(2) --------->ANAC46 <---------TOE2(3)   <---------HSFB2a(2)     --------->ALFIN1--------->ALFIN1 ==HOX2a_HOX2a--------->ANAC58 <---------YAB1      --------->HSFB2a(2)   <---------ANAC46  --------->MYB55(2) ===============================HOX2a_HOX2a <---------ANAC58         ------>ZmHOX2a(1)    <--------P=   ggtccagaactcatagaagcaatcaaaggatctaagattgcagttgtcttgctctcgaaggactacgcttcctcgtcgtggtgcctgaacgagttggtgg  5932700             ===================HOX2a_HOX2a                                                       ---             <------ZmHOX2a(1)                                                                    ---        <---------REM1(1)                                                                        <---        --------->ALFIN1                                      <---------At4g35610               -----      <---------ANAC46                                     ------>ZmHOX2a(2)       --------->LBD16<-- ------ZmHOX2a(2)                                         <------ZmHOX2a(2)      <---------LBD16<---- ------->ARR11(3)                                        <---------ARR14(2)     --------->MYB52(1)<-- -------GLK1(1)          <------ZmHOX2a(2)               --------->ARR14(2)    --------->MYB52(1)<--- --------ARR11(3) <-----------RAV1(1)                 --------->ALFIN1     --------->ANAC58 --------- -MYB46(3) ----------->GT1                          <---------bZIP60(2)    --------->ANAC58 <-------- ===================HOX2a_HOX2a   --------->YAB1    <---------ANAC46  ---------->DOF2    <----------DOF2   agatcatgaagtgtaggaaaatgttggatcaaacagtgatgacaattttctatgaagtggatccaactgatgtaaagaagcaaaccggagactttgggaa  5932800  Previous    Next  AGI:  At2g14080.1    Description:  disease resistance protein (TIR-NBS-LRR class), putative. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to RPP1 (RECOGNITION OF PERONOSPORA PARASITICA 1) [Arabidopsis thaliana] (TAIR:AT3G44480.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G25510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70119.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain AAA+ ATPase, core; (InterP Range:  from: 5932268    to: 5936682    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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