Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    --------->ARR14(2)                                                                  <---------ARR14(2)                                                                <------MYB46(1)    <---------MYB46(3)                                          <------MYB83 ---------MYB46(3)                                           <---------MYB52(1) -------->ATHB12                                            <---------SPL7 --------MYB52(1)                                          <---------ANAC58                    <----- -----GAMYB                             <---------AHL20(2) <---------ANAC58<----------DOF2  <xxxxxxxx   ggttattggttattttggttcttaagtttagtatctatttgtttattttgaaatttcagtttcgttcggtttcggttctttcggttttaaaatttagtat  5915900                                                  <---------AHL20(1)                                <                                                  --------->AHL20(1)                               <-     <---------MYB52(1)                           <---------ARR11(3) <---------MYB52(1)            --    <-------GAMYB                        <---------YAB1     <---------AHL20(1)                    <--   ----------->GT1                    <---------MYB52(1)    <---------ARR11(3)               <------- ------GT1           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->AHL20(1)              --------- xxxxxxxxxxxxxxxsmallRNA(l2)  <---------CCA1(1)   --------->ARR11(3)<-------GAMYB     <-----------GT1   ccattcggttattttgttttgaacaattttggatatttcagttattgttgaatattttccaatatttttcggttattttcgagtatttttactattttat  5916000                                                                                      --------->LBD16                                                                                     --------->LBD16                                                                      --------->ARR14(2)                                                                    ----------->GT1  --------->ANAC58                                                                    --------->LBD16  --------->ANAC46                                                                  <---------ZAT18    --------->ANAC58                                                                  <---------LBD16   <---------HSFB2a(2)                     <---------AHL20(2)                    <---------YAB1         -------->P                     --------->AHL20(1)                 <---------YAB1<---------ARR14(2)                    --------->ATHB51                    <---------AHL20(2)        --------->MYB52(1) ---------AHL20(2)  <---------ICU4                   --------->ICU4<---------ANAC46 --------->HSFB2a(2) --------AHL20(1)   <---------AHL20(2)               --------->AHL20(1)      <---------TOE2(3)     -- ------->AHL20(1)   --------->AHL20(2)               --------->ARR11(3)<---------RVE1(1)          <-- -------AHL20(2)   --------->ICU4                    <---------AHL20(1)<---------CCA1(1)          --- --AHL20(2)     --------->AHL20(2)                   <---------ARR11(3)--------->GLK1(1)          <-- >AHL20(2)      <---------AHL20(2)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <-------   atatattttcaagtatttttaattattttgtttagaaataacaaatagttttgaaaatattattgtagtgcggatattttaggctacccgaaatatttcg  5916100                                                                     --------->ARR14(2)            <------MYB46(1)                                        <---------MYB46(3)            <------MYB83                                          <---------DEAR3(1)        --------->ARR14(2)                                       <---------ZAT18     <------NtERF2                                            <---------ANAC58    ------>NtERF2                                        <---------YAB1------------>CBF ------->SPL7          <---------YAB1      <---------ARR14(2) <---------ANAC58 -------MYB52(1)    <---------MYB52(1)     --------->ARR14(2)<-----------RAV1(1) ------>ARR14(2)   <-------GAMYB    <---------ANAC58    <---------AHL20(1)       <-------TEIL -------ARR14(2) <---------ANAC46   <---------ANAC58    <---------AHL20(2)<------------CBF ----GT1<---------ARR14(2)        <-----------GT1     <---------YAB1 <---------ARR14(2)     ---------   gttcggcaccgatttggtttcggttatttttaaaattttcgtctcgattcggttctattatttttggtgcggttccaattggatacattcgattcggttt  5916200                                                                                               <-----                                                   --------->TOE1(3)                         ------>ZmHOX2a(1)                                                   <---------MYB59                       <---------ARR14(2)                                                   --------->TOE2(3)                     --------->ARR14(2)               <---------ICU4                    ------->TEIL  <---------ANAC46         --------->GLK1(1)               --------->YAB1                 <---------ANAC58 <---------ANAC58        ----------->ARR10              --------->ICU4          --------->At5g28300   *TSS                   --------->LBD16      <------------CBF      <-----------HVH21 <---------ANAC58 <---------ANAC58   --------->LBD16    <---------RAP2.6(3)    ----------->GT1<------------CBF<------------CBF       <---------LBD16 -->GT1       <---------ATHB12       ----------->GT1   ------------>CBF         <---------At5g28300   atttgccgaattgctaatcatgaactgagaggtcacaaatggtaaattgcgaacctaaacaattggcgtgtattcattcatttcccgcgtaaatcctcca  5916300                                     --------->O2                                     <---------O2                                     ================================================bZIP_DOF     ---                            <---------ETT(1)                                                     ----                            --------->DEAR3(1)                                                   <---               --------->DOF5.7(2)   --------->TGA1a                                             ----              =================================bZIP_DOF                                         <----              --------------------->WRI1                                                       <-----              <----------DOF2        <---------TGA1a                                         --------             <---------ANAC46----------->RAV1(1)                                             <-------            <------NtERF2   --------->RAP2.3(3)                                             <--------           --------->LBD16  ----------->HVH21                         <---------HSFB2a(2)   ---------           <---------ATERF1(1)<---------REM1(2)                    --------->GLK1(2)        <--------          --------->DEAR3(1)--------->DREB2C(2)                  --------->HSFB2a(1)    <---------ARR14(2)          --------->ATERF1(2)<-----------HVH21                   <---------HSFC1(2)     <-----------HVH21          <---------ATERF1(2)------>NtERF2                       --------->HSFC1(2)     --------->ARR14(2)          <---------DEAR3(1)--------->At1g77200              <---------ANAC46         --------->LBD16         <---------LBD16    --------->DEAR4(1)             --------->MYB52(1)     -------->P---------         --------->ATERF1(1)--------->ANAC46              ----------->HVH21      <---------ALFIN1----   <<<<<<<<<TBF1      <---------GLK1(2)                   ----------->TGA1---------->DOF2  ---------- ----ALFIN1------>NtERF2   --------->RAP2.3(1)       --------->GLK1(2)--------->HSFB2a(2)<------ZmHOX2a(2)   ccttcttcttcgccggcgttaatggaatcgccgacacagacgtctgagcacatagaatccatgacggagtttctagtaaagcactaccccgatcagctcc  5916400  <---------ARR11(3) ------>ANAC46 ----->HSFB2a(2)                                                --------->WRKY45 ------HSFB2a(2)                                                --------->WRKY38(1) -->NtERF2                                                      --------->WRKY12 -----ANAC46                                                   --------->DOF5.7(2) ----LBD16                                                    ----------------------->TaNAC69(2) ->ARR14(2)                                              --------->ARR14(2) --ARR14(2)                                              <---------ARR14(2) -At4g35610                                           --------->ANAC46 >ZAT2                                              --------->ANAC58 -ZAT2                      --------->ZAT14         --------->ANAC58                   <-----------HVH21 >At4g35610         ------>ZmHOX2a(2)              --------->SPL7<---------DOF5.7(2)<---------ANAC58 ----->LBD16  ----------->RAV1(2)                  --------->ZAT18      --------->GLK1(2) ->ARR10      <---------At4g35610                  <---------ZAT14<---------TOE2(3) <---------ANAC58   gcgaaatctctctctcttctgatcccaaacttcactaccctctcttcatcgagtacgcagaactcgttgacgataatccgtctctagcgcgtcaagtttt  5916500              <---------ARR11(3)              --------->ARR11(3)                          ------->TEIL          --------->ZAT6                              ------->TEIL      --------->LBD16                              <---------ANAC55(2)     --------->HSFB2a(2)                           --------->O2     <---------HSFB2a(2)                           --------->ANAC55(2)    ------>ZmHOX2a(2)                              <---------TGA1a   <------ZmHOX2a(2)                               --------->TGA1a  <---------ARR14(2)                               <---------O2  --------->ARR14(2)                               --------->ANAC55(1)                --------->ANAC46  --------->AGP1                                   --------->ANAC58                   --------->ANAC58  --------->ARR11(3)                               --------->ANAC58              <---------YAB1     < --------->At4g35610                          --------->At4g35610             <---------YAB1--------- <---------At4g35610                          <---------At4g35610     --------->LBD16 --------->ANAC58   ctcagatcccgaacactatcttcggcaattcgacgattcagccattctagctcacgtatgtactcaattttccccaaaatttgattatacgaaatggtga  5916600                           <----------DOF2                          <---------ANAC58                 ----------->GT1              --------->ALFIN1            <---------ANAC58            <---------ANAC58            <---------ANAC46 ---------YAB1<---------REM1(1)                          --------->ATHB12              <-------TEIL -->GT1 <----------DOF2   <---------ANAC58          <------ZmHOX2a(1)           <-----------GT1 -----   tttcgattagctttgggtgtagaaaattgctttggagcatatgaagaaatttgaggagaagattggaattgagaagagatttatacatgttcgtataaac  5916700                <<<<<<<ZML2             --------->HSFC1(1)             <---------HSFB2a(2)             --------->HSFB2a(2)       ------>ZmHOX2a(2)      --------->GLK1(1)      <---------GLK1(1)                   ------->TEIL     <---------ARR14(2)                  <---------CCA1(2)     --------->ARR14(2)        <---------ANAC58     <---------ARR11(3)        <---------ANAC58     <-----------ARR10         --------->ALFIN1                                     <---------YAB1     <---------AGP1            <---------ANAC46                             --------->At4g35610     --------->ARR11(3)      <---------ANAC58                               <---------ZAT2    <---------CCA1(2)        <---------ANAC46                               <---------At4g35610 ---->ZAT6 ------>ZmHOX2a(1) <---------ANAC58                     <---------At4g35610   actagtggatctcctctagaacgaagccctggtgtgtgtgtgtgtatctcttgttttcgagtttgttctgcttctcttagctgattttgattttgacaca  5916800  Previous    Next  AGI:  At2g14050.1    Description:  MCM9; ATP binding / DNA binding / DNA-dependent ATPase. similar to ATP binding / DNA binding / DNA-dependent ATPase [Arabidopsis thaliana] (TAIR:AT1G44900.1); similar to hypothetical protein OsI_021406 [Oryza sativa (indica cultivar-group)] (GB:EAZ00174.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ76064.1); similar to hypothetical protein OsJ_019771 [Oryza sativa (japonica cultivar-group)] (GB:EAZ36288.1); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain MCM; (InterPro:IPR001208); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains Int Range:  from: 5916260    to: 5920899    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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