Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------TOE2(3)        --------->MYB59 ------>ZmHOX2a(2) ------ZmHOX2a(2) ------->AGP1 --------AGP1 ------->ARR14(2)                                                    <---------ATHB12 ------->ARR11(3)                                           --------->DOF5.7(2) --------ARR14(2)          <---------AHL20(2)             <---------ANAC46                     <----- --------ARR11(3)    --------->ANAC55(2)                  <---------ANAC58                --------->ATHB12 -------CCA1(2) <----------DOF2                           <---------ANAC58      <---------YAB1 <-----   agatcttagtaaggtttacttttacttattcaatttgttctgtttcatttgatttgggtttcgtttactcaatcgatttgttatgtttcatttgattagg  5826100                                              --------->DOF5.7(2)                                            <---------ANAC58                                            <---------ANAC58                             --------->DOF5.7(2)   --------->DOF5.7(2)                      <---------ANAC46                           <---------ANAC58 <---------ANAC46                     <---------TOE2(3)                                <---------ANAC58 <---------ANAC58               --------->AHL20(2)                                     <---------ANAC46 <---------ANAC58               <---------AHL20(2)                               <---------TOE1(3) ----TOE2(3)           <---------YAB1 <---------TOE1(3)           <---------YAB1 <---------TOE2(3) ----TOE1(3)<---------ATHB12   --------->AHL20(2)      <---------ATHB12     --------->ATHB12      <--   gtttcgtttactcaatcgatttgttatgtttcatttaattagggtttcgtttactcaatcgatttgttatgtttcatttgattagggtttcgtttactca  5826200                                                            --------->ALFIN1                                                          <---------ANAC46                              <---------ANAC58           ------->MYC3                    <------MYB83                              <---------ANAC58           <-------MYC3                    <------MYB46(1)                              <---------ANAC46           ------->MYC2                <-----------RAV1(1)                        <---------TOE1(3)                <-------MYC2       <---------DAG2<-------GAMYB         <---------YAB1 <---------TOE2(3)      --------->ICU4               <----------DOF2   ------- -------ATHB12     --------->ATHB12<-----------GT1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------MYB46(3)   atcgatttgttatgtttcatttgattagggtttcgtttaacaaaatgagatgatgagcatgtgtgtagcattagacaactttatattttgttggttatgc  5826300                                                                                                <----                                                                                         ------>ZmHOX2a(2)                                                                                        <------ZmHOX2a(2)                        --------->ARR11(3)                                             --------->AGP1                        <---------ARR11(3)                                             --------->ARR11(3)                       <---------GLK1(1)         <---------YAB1      --------->ATHB12  <---------ARR11(3)                       --------->GLK1(1)       --------->YAB1      <---------TOE2(3)   <---------AGP1                      <---------ARR11(3)    <----------DOF2     --------->AHL20(2)    <---------CCA1(2)                     <------ZmHOX2a(1)<---------YAB1       <-------TEIL      <-----------GT1    <---- -->AtLEC2      ----------->RAV1(1) --------->YAB1--------->YAB1<---------AHL20(2)<----------DOF2   aaaatttttagtttaatcccacaggatatctcgactaattgtgattcttttataatagagtttcattttaatgtttgattttctctttagatcttattag  5826400                                                                                                    -                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               <-----                  <---------WOX13(1)                                                         <-------                 <------------CBF                                                            ========     <---------ICU4                               <---------AtLEC2                       <-----------HVH21     --------->ATHB51    <----------DOF2    <---------AHL20(2)                       --------->ARR14(2)  --------->YAB1 >>>>>>>>>ARR2             <---------YAB1                            <---------ARR14(2) -----TOE1(3)   --------->ATHB12          <---------AHL20(2)                   <---------TOE1(1)  --- -----TOE2(3)  <---------YAB1           <---------YAB1    *TSS  <---------LBD16<---------TOE2(1) ----   ggtttcataatttgagtttgattgtctctttactaatgtgttatttttatttgcaagatgagcttctctgggaacgattatacgaggtatctgtctcagc  5826500           <---------ALFIN1          --------->At4g35610          --------->LBD16                                                                --------->YAB1        <---------ZAT18                                                                ------>MYB83        --------->ZAT18                                                             <---------MYB55(2)      ------------------>SPL14                                                      <---------ATHB12      --------->ARR14(2)                                                            --------->MYB46(3)   ======================MYC_MYB           <---------------AGL15                   -------->P   ------->GAMYB                           <---------MYB46(3)               <---------At4g35610 ---------->RAV1(1)                       <-----------------AGL3            --------->At4g35610 --->At4g35610 <---------O2              --------->At4g35610            --------->MYB52(1) --->ZAT2 <------NtERF2                  <---------At4g35610            ----------->RAV1(1)   ------- ----At4g35610 --------->O2              <---------ZAT2                --------->ANAC46------>MYB46(1) ----ZAT2 <---------At4g35610            --------->ZAT2              --------->ANAC46 --------->WOX13(1) ----RAV1(2)   <---------TGA1a         <-----------RAV1(2)          <---------ZAT18------>MYB83 ===========RAV--------->TGA1a       --------->AtMYB61              <---------ZAT14------>MYB46(1)--- ------>At4g35610                   --------->ANAC46                --------->ZAT14--------->ANAC58 ----->RAP2.6(2)   <---------ZAT6 <---------ALFIN1               ------>ZmHOX2a(1) --------->ANAC58 <   agcaacagagtccgcacacgagtgtaagtgaagggaacacctcagctgttaatggtactcgtcgttcctctgcacaacagatgccaaccaatctgaactc  5826600            <---------ARR14(2)          <---------HSFB2a(1)          <------MYB83     --------->LBD16          <------MYB46(1) --------->RAP2.6(2)          --------->HSFC1(2)          <---------HSFC1(2)                                         ------>ZmHOX2a(1)          --------->HSFB2a(1)     --------->ATHB12               --------->ARR14(2)      --------->LBD16     ------->GAMYB                   --------->ATHB12                  ---------     <---------HSFB2a(2)  --------->ANAC58                -------->ATHB1                    ---------     --------->HSFB2a(2)  --------->ANAC58                --------->YAB1   ------->GAMYB------->GAMYB    <---------LBD16      --------->MYB46(3)               <---------ICU4  <------------AtMYB77 --------->YAB1      ------>ZmHOX2a(1)                   <---------ATHB12 --------->MYB46(3)--------- -->ZAT6  <---------MYB46(3)     <---------ATHB12      --------->WOX13(1)>>>>>>>>>MYB2 --------->ANAC46 ------>YAB1--------->ARR14(2)  <---------ARR11(3)   --------->WRKY18(1) >>>>>>>>>MYB1 --------->MYB46(3) ---------ATHB12<---------At4g35610            --------->TOE1(3) <---------ARR14(2) <---------WRKY38(1)   taatcatccggatggttctgctcctcaaccgcaaaatcattcgcctcaaccttcagtcaatcattcgaatcctctaactgccaggctcaacgacaagaca  5826700                                                              --------->LBD16                                                              --------->HSFB2a(2)                                                              <---------HSFB2a(2)                                                             <---------LBD16                                                            <---------LBD16                                                           ------>ZmHOX2a(1)                                                          <---------SPL7                                                         --------->SPL7                                                       <-----------HVH21                                                      ------->GAMYB                                                      --------->DEAR3(1)                                                     --------->DEAR3(2)                                                     --------->MYB46(3)                                                     <------------AtMYB77                                                   --------->MYB52(1)                                                  ------>ZmHOX2a(1)                                                 <---------MYB59           <--------P                                                ------>ZmHOX2a(2)         <---------MYB52(1)                        <---------ANAC58        ==================HOX2a_HOX2a                        <---------ANAC58       <------ZmHOX2a(2)        <---------HSFB2a(2)                        <---------ANAC46      <---------ARR11(3)        --------->HSFB2a(2)                    ===================================HOX2a_HOX2a  <----------DOF2                    ------>ZmHOX2a(1)         --------->ARR14(2)   <---------HSFC1(2)                    ==================================HOX2a_HOX2a  --------->HSFC1(2)             ---------->DOF2                  --------->ARR11(3)   <---------HSFB2a(1)  <---------ANAC55(2) >ANAC58 <---------ANAC58       <----------DOF2===================HOX2a_HOX2a  --------->YAB1 >ANAC46 <---------ANAC46    ------->TEIL     <---------ARR14(2)   --------->HSFB2a(1)  --------->ANAC55(2) >ANAC58 <---------ANAC58  <-------TEIL     ----------->ARR10--------->HSFB2a(2)   --------->ANAC46   ctagaagagttgcttgaaagtcctgggcgtgcatctttgcctagattagatcctaaccgtcctccgggaactttctggtaagtataagtcacttgttttg  5826800                             --------->O2                             <---------O2                             --------->ANAC55(2)                        --------->ANAC58                        --------->ANAC58                    --------->YAB1                    -------->HAHB4                   --------->ICU4                                      ----------->HVH21         ----                   <---------YAB1                                  <---------TOE2(3)           <-----                 <---------ICU4                              <------MYB46(1)                 <-------              --------->ANAC55(2)                            <------MYB83                    <-------            <-----------GT1  <---------ANAC55(2)            <---------TOE1(2)           --------->MYB46(3)       <---------AHL20(2)    <---------TGA1a   <---------GLK1(2) ----------->HVH21     >>>>>>>>>>>>>>   cattctaagttaatttacataatgataagtcacttgtctctgtctgatggaatcttgttttgtaggtttgacgatgacacattagtagtagccactgtcc  5826900                               --------->ANAC58 ----->LBD16                   --------->ANAC46        ----------->RAV1(1) ----LBD16                     --------->ANAC58      --------->At4g35610 --SPL7             ---------->DOF2                 --------->ANAC58    <---------MYB46(3) ----HVH21      --------->GLK1(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <---- >>>LFY  ---------->DOF2     <---------ALFIN1       --------->ANAC58   <---------TOE2(2)<----------DOF2   ggagcatttttgaaagagatttcaaagagcctcacgctaattggacacagacaccagcaccagtgatcaaacgctggtttgagacatttgctgtaagtct  5827000  Previous    Next  AGI:  At2g13870.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 1.4e-103 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 5826458    to: 5828666    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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