Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->At4g35610                                                                  <---------ZAT2                                                                  ------>NtERF2                                                               --------->At4g35610                                                              --------->ANAC46                                                              ------->GAMYB                                                              ======================================MYC_MYB                                                             --------->MYB46(3)                                                             <------------AtMYB77                                                            -------->P<---------At4g35610                                                          --------->MYB46(3)                                                         --------->At4g35610                                                 <---------HSFB2a(1) <---------ATERF1(1)                                                 <---------HSFC1(2)--------->ATERF1(1)                                                 --------->HSFC1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxsmallRNA(i)<------NtERF2       --------->TGA1a                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           ------>NtERF2                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->LBD16                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->ANAC58                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------At4g35610   <-----                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->At4g35610   <-----                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)=======================================MYC_MYB                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)xxxxxxxxxxxxxxxx>smallRNA(i)    <---------TGA1a                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)========================================MYC_MYB             --------->At4g35610  ------>ZmHOX2a(1)      <---------At4g35610  ------->TEIL--------->O2             ------>ZmHOX2a(1)   --------->TOE2(3)     xxxxxxxxxxxxxxxx>smallRNA(i)--------->ANAC46--          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->HSFB2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ARR14(2) --------->ZAT2--------->DEAR3(1) <-         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->ARR14(2)  --------->YAB1    <---------ARR14(2)--------->DEAR3(1)--------->DEAR3(1)         <---------ARR14(2) <---------ATHB12xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------ALFIN1<xxxx        <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ZAT2   <---------O2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)--------->AtMYB61<---      <------NtERF2 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->ANAC58--     ------>NtERF2  <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------>ZmHOX2a(1)  --------->ZAT2  <xxxxxxxxxxx  <---------ATERF1(1) --------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ALFIN1  <-----  --------->LBD16   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)--------->ANAC46<-----------RAV1(1)   <------NtERF2 ---------LBD16    <---------At4g35610<xxxxxxxxxxxxxxxxsmallRNA(i)<---------ATERF1(1) <---------ALFIN1   cacccggtgccaatcctctgcaactgctccatcatcctcaaataagatggaacctcctcagcaaccgcagcccgctgctgcacctccgccactcgtggcg  5820200                                              ----------------->AGL1                                              <-----------------AGL1                                -                                            ------->GAMYB                                         <xx                                            xxxxxxxxxxxxxxxx>smallRNA(s)                          <--                                 --------->At4g35610                                              ---                               <------------MYB.PH3(1)                                           ----                       ----------->RAV1(2)  xxxxxxxxxxxxxxxx>smallRNA(i)                         <---                       ===========================RAV                                            xxxx                       <---------ZAT2      xxxxxxxxxxxxxxxx>smallRNA(s)                          <xxx                       xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxx>smallRNA(i)<-                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               xxxxxxxxxxxxxxxx>smallRNA(s)--                     <---------ALFIN1     --------->At4g35610         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->MYB46(3)         <xxxx                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   --------->AtMYB61  ----------->RAV1(1)     <xxxxxxxxxxxxxxxxsmallRNA(i)     <-----                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxsmallRNA(i)      ------                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    >>>>>>>>>E2Fd                      <-----                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     >>>>>>>>>E2Fc--------->HSFB2a(2)   <-----                   <---------------AGL15<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->TOE2(2)<----                   <---------ALFIN1  <xxxxxxxxxxxxxxxxsmallRNA(s)   ------>MYB46(1)           <------                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ------>NtERF2 <---------HSFB2a(2) <-------        <<<<<<<<<<<<<<<<<LFY   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)------>MYB83            ---------      --------->ATERF1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->P --------->TOE1(2)<xxxx     <---------ATERF1(1)     --------->ARR14(2)--------->TOE2(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----ANAC58        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->LBD16    ----------->RAV1(2)<--- ----ANAC46       <-----------------AGL1--------->MYB46(3) <------NtERF2<---------LBD16     <-------- --------->RAV1(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)------ --------ZAT2     ----------------->AGL1<---------MYB55(2)--------->ANAC46    <---------ZAT2--------- xxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---NtERF2--------->ATHB12 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->MYB46(3)      --------->SPL7 ------->ZAT2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ANAC58  --------->ARR14(2)<------ xxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->ANAC58  <---------ARR14(2)<------ ----ANAC58      --------->SPL7--------->MYB46(3)    ------->GAMYB--------->AtMYB61     ------>ZmHOX2a(1)   caactggagcctccattggtaccacacctggtaaccgctccaacaactgcctcaacaggcccgccaaaccaacctctggaacctgggctcctacggctgc  5820300     <---------ATHB12   --------->ANAC46  --------->MYB46(3) --------->ANAC58 --------->ANAC58 ----->NtERF2 xxxxxxxxxxxxxxsmallRNA(i)                                                  <---------At4g35610 ----NtERF2                                                                 ----------->RAV1(2) ------>ATERF1(1)                                                           =================RAV -->NtERF2                                                                 <---------ATERF1(1) ------ATERF1(1)                                                         <---------LBD16 xxxxxxxxxxxx>smallRNA(s)                                            <---------ALFIN1 xxxxxxxxxxxxxsmallRNA(i)                                           <------NtERF2 --------ALFIN1                                                   --------->RAP2.6(2) ------->DEAR3(1)                      --------->MYB52(1)         --------->PCF2 xxxxxxxxxxxxsmallRNA(i)              --------->ANAC46          ------>MYB46(1)              ------->GAMYB -NtERF2                              <---------ALFIN1        --------->MYB46(3)    xxxxxxxxxxxxxxxxx --->At4g35610               --------->ANAC58                 <---------MYB55(2) ----------->RAV1(1) ----LBD16                   --------->ANAC58                 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----At4g35610              ------>MYB83                <---------ARR14(2) --------->LBD16   <------- -----DEAR3(1)              ------>MYB46(1)             --------->ARR14(2) ------>NtERF2   --------->RAP2.6(3) ---RAP2.3(1)              --------->MYB52(1)      ------>NtERF2------>MYB83--------->At4g35610 --DEAR3(1)               --------->AtMYB61    --------->At1g77200--------->RAP2.3(3)--------->At4g35610 >At4g35610               --------->DEAR3(1)   <---------ETT(1)--------->ANAC46<---------ZAT14 xxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->MYB46(3)    --------->MYB52(1) ------RAP2.3(1)          --------->MYB46(3)  --------->DEAR3(2)--------->ZAT2 --------->At4g35610 -At4g35610           <---------At4g35610   --------->ARR14(2)--------->AtMYB61--------->ZAT18  ----- --->ATERF1(1)        --------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <------NtERF2--------- -->RAV1(2)         ---------->CDC5xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ALFIN1<----------DOF2 ---ERF1       <---------ZAT18------->GAMYB<---------MYB52(1) <---------ALFIN1<---------ATERF1(1)<--- ---ATERF1(1)  --------->PCF2--------->ANAC46--------->SPL7  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <   ggcacccatcactcttgggccctcagcaccaacggcatacacaccggtaccgacaccagttccaccagcccccactccggctgcaccagctataacggca  5820400                                                                                                  <--                                                                                               ------                                                                                             xxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                              <---------ALFIN1                            <xxxxxxxxxx                                            <---------ALFIN1                             --------->SPL7                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------ZAT18                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------MYB52(1)                                          --------->DEAR3(2)                          <---------DEAR3(2)                                         --------->PCF2                              <---------ATERF1(2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            --------->ATERF1(2)                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    --------->PCF2       ------->TEIL                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <---------TCP16(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------TOE1(2)                    <---------TCP20    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 --------->LBD16     --------->At4g35610           <-----------RAV1(1)<---------ATERF1(1)    <---------HSFB2a(1)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->HSFB2a(1)<xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <-----------RAV1(1) <xxxxxxxxxxxxxxxxxxxxx xxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----------->RAV1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----TGA1       <---------LBD16      <------NtERF2  <---------At4g35610  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ->NtERF2      <---------LBD16       <---------At4g35610 ======================RAV  <---------LBD16 x >ANAC46 <---------MYB59          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---NtERF2------>ZmHOX2a(1)    <-----------RAV1(2)  --------->At4g35610<xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------DEAR3(1) xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxx   ccaagaccgttcctaactccgggctccacaaactcaggctgcgaacccacactctgctcaactgtggcactgtggccatcactctcgccggtaccctcga  5820500                       <xxxxxxxxxxxxxxxxsmallRNA(s)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                ------>NtERF2             --------->LBD16           <xxxxxxxxxxxxxxxxsmallRNA(i)          ------>MYB46(1)                           ------>ZmHOX2a(1)          -------->P--------->ANAC58           <---------At4g35610          --------->SPL7              --------->ANAC58      ----------->RAV1(2)          ------>MYB83xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------ALFIN1 --------->ANAC58     --------->ZAT2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ZAT2  --------->ZAT18    ---------->ID1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->At4g35610   <-----------HVH21--------->ANAC58  --------->ANAC58    ------->GAMYB ----ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(s)    --------->At4g35610 --->HSFB2a(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxsmallRNA(s2)     --------->ANAC58--------->ARR14(2) xxxxxxxxxxxsmallRNA(fl3) --------->ANAC58    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ANAC46                    - xsmallRNA(si3)------>NtERF2    --------->ANAC58<---------ARR14(2)                                 -- xxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)*TSSxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->MYB46(3)                       <--   ggactcgtcccctaccgcgaccacgaccacgaccacgaccacgaactccagctcctctaaccatctgcgctactcaagaacaaatggctaagaaactaaa  5820600                                                                             --------->ANAC58                                                                             --------->ANAC46                              <---------GLK1(2)                          ----------->RAV1(1)                          xxxxxxxxxxxxxxxx>smallRNA(i)                ----------->RAV1(1)                          --------->LBD16                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                          <---------LBD16                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       <---------At5g28300                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       -------->P                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               --------->ANAC46               <xxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->ANAC58              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  --               --------->ANAC58             <xxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <x       <---------ARR11(3)<---------ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->ANAC58--------       --------->ARR11(3)<---------ANAC58<---------TOE1(3)      <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxx       --------->AHL20(1)<---------ANAC46<---------TOE2(3)<---------YAB1--------->MYB46(3)   -------- -------->MYB52(1)  <---------MYB52(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)------->GAMYB    -------- ------->TOE1(2)   xxxxxxxxxxxxxxxx>smallRNA(i)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ZAT6 -------MYB52(2)  xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxx   acaaacgaatatatcacaaacaacttaccgtggaatctcatttaaggctcggagaagatgatgctaggactccaacaacacacaattgactaaacactcc  5820700                                                                                                   XX                                                                                                  <xx                                                                                                  XXX                                                                                                <xxxx        ------>ZmHOX2a(1)                                                                      <xxxxx       --------->TOE2(3)                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   --------->WOX13(1) --------->ANAC58                 --------->AHL20(2)     <---------ALFIN1<------  <---------ICU4      --------->ANAC58      --------->YAB1          <---------AHL20(2)     --------->ANAC46 ------->YAB1        ------->GAMYB <---------ALFIN1    <---------ATHB51      <---------REM1(2)------- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------ATHB12        --------->AHL20(2)      ------->GAMYB ->ANAC58           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)           <---------AHL20(1)      --------->TOE2(3) x>smallRNA(se3)    <---------ALFIN1     --------->WOX13(1)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)xx ->ANAC58          <xxxxxxxxxxxxxxxxsmallRNA(s)   <------ZmHOX2a(1)<---------AHL20(2)      --------->TOE1(3) ->ANAC46 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ----------->GT1--------->WOX13(1)   ------>ZmHOX2a(1) xxxxxxxxxxx>smallRNA(si3)         ----------->RAV1(1) <---------AHL20(2)<-----------GT1 <---------At5g28300   ataatcaatcctcaatatgctaacaccctagctcatcccacatcaatcaacaggaaaataattcatcaattaatttttctacacatcctataaccgtaat  5820800                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                    <---------MYB55(2)                                                                                    --------->MYB46(3)                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <---------ATHB12                                                                                   ------>MYB46(1)          ------>MYB83                                                             --------->ANAC58          ------>MYB46(1)                                --------->KAN4(2)         ------>MYB83  ----          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------ICU4             -------->P   -----         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------AHL20(2)            --------->ANAC58        <---------MYB59                         --------->AHL20(2)               --------->AtMYB61  < <xxxxxxxxxxxxxxxxsmallRNA(i)                   <---------YAB1                   xxxxxxxxxxxxxxxxxxxx XXXXXXXXXXXXXXXXXXXXX>MIR829.1                 <---------AHL20(2)              --------->MYB46(3)  - xxxxxxxxxxxxxxsmallRNA(s)                     <---------AHL20(1)    <---------ARR11(3)         <---- XXXXXXXXXXXXXXXXXX>MIR845B                    --------->AHL20(1)    --------->ARR11(3)         ----- xxxxxxxxxxxxsmallRNA(s)        <---------AHL20(2)  <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxsmallRNA(i)----------->HVH21       --------->AHL20(2)    <-----------ARR10          <---- ---ARR14(2)         ----------->RAV1(2)    --------->AHL20(2)      --------->CCA1(1)         ------- -->ARR14(2)        -------->P  --------->AHL20(2)  --------->AHL20(2) <---------MYB59     --------->YAB1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->AHL20(2)        --------->RVE1(1)    --------->AHL20(2)   cgctctgataccaaattgaaacaacctgacccatttttttaaaaaaaaatataattaaatattcccataaatatctaactaaaccaaccaataacataat  5820900         --------->ANAC58         --------->ANAC58     <-----------GT1 --------->AHL20(1) --------->AHL20(2) <---------AHL20(2) ------ICU4 ----->YAB1 ----->ATHB51 -----HAHB4 -----ATHB1 xxxxxxxsmallRNA(i2)                    --------->AHL20(2) ---->HAHB4                             <---------AHL20(2)                                   <xxxxxxx ---->AHL20(2)                          <---------ATHB51                                <xxxxxxxxxxxx ---------AHL20(2)                   --------->AHL20(2)                                <xxxxxxxxxxxxx xxx>smallRNA(se3)                  --------->AHL20(2)                         -------->P  <---------ATHB12 -------->AHL20(2)   <---------------AGL15                                 --------->YAB1 xxxxxxxxxxx -----YAB1        <-----------GT1   <---------AHL20(2)               --------->YAB1    <xxxxxxxxxxxxx ---->ICU4     <---------ICU4   --------->AHL20(2)            --------->YAB1 ------>ZmHOX2a(1) -----ATHB51  --------->ICU4<---------YAB1      ====================================HOX2a_HOX2a <xxxx -->YAB1 --------->ANAC46<---------AHL20(2)     <------ZmHOX2a(2)--------->MYB52(1)   <xxxxxxxxxxxxxx   aattaaattacaagtcataaatactattttatgaataaataaataattcgatcaacaaaaccaagaataactgataatcctaaccaggttccaataacca  5821000                                                                                        --------->MYB46(3)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              ----------->RAV1(2)                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              =======================RAV                                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                          <----------DOF2                                                                          <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                       <---------ARR11(3)----------->RAV1(1)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 --------->MYB52(1)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                --------->TOE1(2)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)               <---------MYB52(2)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->YAB1                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ------>MYB46(1)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      ------>MYB83<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    --------->AtMYB61                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------MYB46(2)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->MYB46(3)                 <----------DOF2              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------MYB111(1)                xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   --------->ANAC46            <------ZmHOX2a(2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ANAC58        <----------DOF2  <xxxxxxxxxxxxxxx   --------->ANAC58 xxxxxxxxxxxxxxxx>smallRNA(i)                    <---------DAG2<xxxxxxxxxxxxxxxxxx   --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->YAB1 <xxxxxxxxxxxxxxxxxxxxxx <----------ID1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ICU4 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxsmallRNA(i)          =============HOX2a_HOX2a       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(le3)     <---------ARR11(3)    --------->ATHB12xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxsmallRNA(fl3)       --------->ARR11(3)   <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxx>smallRNA(si3)    --------->HSFB2a(2)     --------->ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxsmallRNA(si3)    ------>ZmHOX2a(1)<---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(le3)    ------>ZmHOX2a(1)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  -- xxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)    <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   aaaacaccaaacataaaacaaacgagttcctagatcatcctcttttccttgccatgatttcacaatcacactttatctttacctgcatcaacaacacaat  5821100  Previous    Next  AGI:  At2g13860.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 2.4e-275 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica) Range:  from: 5816754    to: 5820564    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version