Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   <-                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                <----  <---------YAB1                  --------->HSFB2a(2)                                          <-----  <---------TOE2(3)               <---------HSFB2a(2)         --------->ANAC46               -------- ---->ZmHOX2a(1)             <----------DOF2       <-------GAMYB                             <------- ------>TOE1(3)           <-----------GT1      --------->ANAC46            >>>>>>>>>TBF1    --------- ------>TOE2(3)          <<<<<<<<<<GT-3b     <---------DOF5.7(2)--------->MYB46(3)      ---------->DOF2   ccttaagataaacttgcataggcttatttttcttttctagagtttgtaaacgtcgttgaagttcaaacaacctagaagaagaagctctattaaagtggtt  5804300                                                                ---------->DOF2 --------ANAC58                                              --------->At4g35610 --------ANAC58                                           ------>ZmHOX2a(1) ----NtERF2                                              --------->TOE2(3) ---MYB83                                             --------->ARR11(3) ---MYB46(1)                                          <---------ARR14(2)                  <---------ALFIN1 -----DEAR3(1)                                        --------->ARR14(2)                  ------->GAMYB ---P                                               <---------ARR11(3)      --------->ANAC58 ->MYB55(2)                                         --------->ARR11(3)      --------->ANAC58 --MYB46(3)               ----------->HVH21         <---------AHL20(1)    ---------->DOF2--------->MYB46(3) >ALFIN1              --------->At4g35610 ----------->RAV1(1)<---------At4g35610       <-----------GT1   ggcgagagtaatccatacctcatgagcagtgacacagttaacaacaacattcaatatatcctcagcaaaagacccaagaagccaagacttaaccaccttg  5804400                                                           --------->HSFB2a(2)                                                           <---------HSFB2a(2)                                                          ----------------->AGL1               <-----                                                          <---------LBD16        <------MYB46(1)                                                          <-----------------AGL1 <------MYB83  ======                                                        --------->ARR14(2)      --------->ALFIN1                                                        <---------ARR14(2)      <---------AtMYB61                                                       <---------GLK1(1)        <---------MYB46(3)---                                                       --------->GLK1(1)        --------->MYB111(1) <                                                     --------->YAB1            <--------P      ------                                               ------>NtERF2            --------->TOE2(2)     -------                                              <---------bZIP60(1)       --------->TOE1(2)     -------                                              --------->TGA2(1)     --------->ARR14(2)        -------                      <-----------------AGL1  --------->ANAC58     <------ZmHOX2a(1)          <------              --------->TOE2(3)            ----------->TGA1--------->ANAC46 <------ZmHOX2a(1) <------             --------->YAB1   <------MYB83 ----------->HVH21--------->LBD16 =========================            <---------ATHB12  <------MYB46(1) --------->bZIP60(1)  ==================================           ------>MYB46(1)   --------->MYB59  --------->ANAC58    --------->ANAC58           <-------           ------>MYB83   <---------ARR14(2)  --------->ANAC46    --------->ANAC58           --------         <---------MYB59  --------->ARR14(2)  <---------TGA2(1)   --------->ANAC46      ---------->DOF2   tctgttttgaaccaaacatcaaactccgaatttggtctctcagtagtgacgccattgatatccggaacaggaaacgtaggagttggtgctaaaagagatc  5804500 --------->YAB1 -ZmHOX2a(2) ================HOX2a_HOX2a -------->GT1 ---------ZAT6 --->CCA1(2) -->AGP1 -->ARR11(3)                       <------ZmHOX2a(1) -->ARR14(2)         <---------WRKY18(1)                                 <---------ANAC46 ---ARR11(3)        ----------->HVH21           --------->HSFB2a(1)      <---------ANAC58 ---ARR14(2)        --------->WRKY12          ------>MYB83               <---------ANAC58 =HOX2a_HOX2a       --------->WRKY38(1)    --------->DEAR3(2)        --------->At4g35610 =HOX2a_HOX2a  --------->ANAC58  <---------TOE2(3)                   <---------At4g35610 --GLK1(1)     --------->ANAC58--------->MYB52(1)           ----------->GT1           --------->At5g28300 ->GLK1(1)------>ZmHOX2a(1)    ---------->DOF2------>MYB46(1)       <-----------RAV1(1)   cagtgataaatcctaacaagccttgaccagaaataaaggattcaaaccgactcttccaaagaatgtaattttgctgcgtgagagtgactgtaacacagtt  5804600                                             --------->HSFB2a(2)                                             <---------HSFB2a(2)                                     ------>ZmHOX2a(2)                                    --------->GLK1(1)                       ---------->DOF2   <----------DOF2                --------->ZAT14     <---------GLK1(1)              <---------------AtSPL8             --------->LBD16       ------->TEIL                    --------------->AtSPL8            <---------ANAC46       <---------AGP1  *TSS            --------->DAG2             -------            <---------ANAC58       --------->ARR11(3)            ---------->DOF2        ---------->DOF2            <---------ANAC58       --------->ARR14(2)         --------->AtLEC2        <---------AHL20(2)           <---------LBD16         <---------ARR14(2)       --------------->AGL15    --------->AHL20(2)  --------->ICU4<---------ZAT14    <---------ARR11(3)      ----------------->AGL3  ------->TEIL------   ggaaatgttgagttgcggagcactgtaaagctccatggatctcctttccataagctctgataccatgaaaaggtactcacatatgaatttaaaagggatt  5804700                                                                                        -------------                                                                                        <---------WRKY18(1)                                                                                        <-----------GT1                 --------->YAB1                                                        --------->WRKY38(1)                <---------ATHB12                                <---------ZAT14     <----------DOF2           ------>NtERF2                                     <---------ANAC46      <---------DAG2          --------->ANAC46                                   <---------ANAC58   <-----------GT1          --------->ANAC58                                   <---------ANAC58 <---------GLK1(1)     -          --------->ANAC58     ------------>CBF        <---------YAB1     <-------TEIL ----------->HVH21 <---------TOE2(3)         --------->YAB1           <---------ARR14(2)   --------->ARR14(1)   ------- -->ARR14(2)  --------->WOX13(1)                   <----------TaMYB80   <---------GLK1(2)   <-------- --->GLK1(1)------------>CBF  --------->YAB1      ---------->TaMYB80    --------->ARR11(1)-----------   ttcaaggattagacgccaattagtattttttataacaatggttttgttttggtatatacgattgagtgttcttagattcgatttcccttttgaccgtaca  5804800                                                                           <---------YAB1                                                                       ------>ZmHOX2a(1)                                                                       <----------DOF2                                                                       <---------DAG2                                                                     ------>ZmHOX2a(2)                                                                   --------->ARR11(3)    ------------                                                                   <---------ARR11(3)    <-----------                                                                 <---------YAB1          <---------YAB1 --------->CCA1(2)                                             -------->HAHB4            <---------TOE2(3) ----->SPL14                                                   --------->YAB1         <---------ATHB51 -------->ARR11(3)             --------->REM1(1)               <---------ICU4         <---------AHL20(2) -->SPL7                   <---------At4g35610                --------->ICU4--------->ATHB12 -SPL7                     --------->At4g35610                <---------ATHB12     <---------AHL20(2) ---->AtSPL3          --------->YAB1     <---------ICU4      <---------TOE2(3)  ----------->GT1     -   aggatatagagacaccattgctaatagtcatctacatcagaaatacttacatagtagttttctaatgatgatcctttttgattagtaaattatggtactt  5804900                                                                                      --------->MYB52(1)                                                                                ---------->DOF2                                                                               --------->AHL20(2)                                                                           --------->AHL20(2)                                                                           <---------YAB1    --------->YAB1                                          <---------ICU4 <---------AHL20(2)   <---------YAB1                                       --------->AHL20(2)--------->AHL20(2)       -- --------->YAB1                                         <---------AHL20(2)<---------AHL20(1)      --- <---------ICU4                                        <---------AHL20(2) --------->AHL20(1)      --- --->AtSPL8                                 --------->AHL20(1)----------->HVH21<---------AHL20(2) <-- ----AtSPL8                 <---------GLK1(2)<---------AHL20(2)          --------->YAB1       <------ -------->ICU4           --------->YAB1     <---------AHL20(1)<---------YAB1  <---------YAB1  <------   gaattatgatatatgtgtaatttagaatcagaatgtttctgtgatatatatttcttatttatttatgacagagaaatataattaaagctaacaaataatg  5805000                                                                                                    -                                                                                                   <-         --------->ATHB12       --------->ANAC58                                                ----- ------->ANAC55(2)        --------->STY1(2)                                                   <------ ---->TEIL    <---------ANAC58  --------->ANAC46                                          <---------TOE1(3) ------------>AtSPL3      <---------STY1(2)                 <---------ALFIN1              <---------TOE2(3) -----TEIL    <---------ANAC58  --------->ANAC58  <---------YAB1            ----------->GT1   ------- ---------AtSPL8         --------->ANAC58       --------->YAB1        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------AtSPL3         --------->ANAC58      <---------YAB1 --------->ANAC46         <---------REM1(1)   tacgtactgaatgtttgcttcccagactagcaagacgcatcaagggaacatgataatttgctccacataagagagacttggtaaatttgatgaaggtaac  5805100         --------->YAB1      ----------->GT1                                                   <-------TEIL    ------->GAMYB                                                      --------->CCA1(2) --------->MYB52(1)                                            <---------WOX13(1)  <---------AHL20(2) ---------->HVH21               <---------ANAC58             --------->ATHB12     --------->YAB1 --------MYB52(2)               <---------ANAC58           <---------WOX13(1)    <---------YAB1 ---->MYB46(3)                  <---------ANAC46  --------->ARR14(2)  <---------ARR11(3)          <-- ---DOF5.7(2)                 <---------ANAC46    <---------ARR14(2)--------->ANAC58            <---- -->MYB52(1)<---------ICU4 <----------DOF2       <---------CCA1(2)  --------->ANAC58          -------   gactaacggagtaataactccaatctcatcttttgtgtgttattcaaatgcctatcttttgactgattgcaagatacatgtttataatattagttttaaa  5805200  Previous    Next  AGI:  At2g13850.1    Description:  transposable element gene. copia-like retrotransposon family, has a 9.1e-219 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element) Range:  from: 5800008    to: 5804651    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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