Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ----------->GT1       <---------YAB1      --------->ARR11(3)      <---------ARR11(3)      <---------AHL20(1)      --------->AHL20(1)    --------->AHL20(1)                                                                              <    <---------AHL20(1)                                                                            <--    <---------AHL20(2)                                                                           <--- --------->AHL20(1)                                                                             <---- <---------AHL20(2)                                                                            <----- --------->AHL20(2)             --------->AHL20(2)                                             ------ ----->AHL20(2)                <---------ARR11(3)                                    ================ -----AHL20(2)                 --------->ARR11(3)                                    ================ ---->AHL20(2)                 <---------AHL20(1)         --------->YAB1 --------->YAB1     <-------- ------>AGL15                  --------->AHL20(1)         --------->AHL20(2)         ------>ZmHOX2a(1) ------->AGL3            ----------->GT1            ----------->GT1 ----------->HVH21================ ------->AGL1        --------->ARR11(3)      ---------->DOF2 ---------->DOF2   <---------MYB46(3)<---   aaataaaatatttttgttaaaaacatattgaaaaatatttagatgtgtaaagtaatgtaataaaaaagatgtgactcatagtcgttcctctggtatggtg  5732700                                                                       --------->LBD16                                                                       <---------At4g35610                                                                       --------->At4g35610                                                              --------->O2                                                              <---------O2        <---------At4g35610                                   <---------TGA1a       ------>ZmHOX2a(2)                                      --------->TGA1a      <------ZmHOX2a(2)                                       <---------bZIP60(2)  --------->SPL7                                              <---------ANAC46 ---------SPL7                                               xxxxxxxxxxxxxxxx>smallRNA(i) -------------AtSPL3                                       <---------TOE1(1)                   ------ ---NtERF2                                                 <---------TOE2(1)                   ------ -----MYB46(3)                                      --------->LBD16  <---------LBD16           <----- ----ANAC46                                        --------->LBD16 --------->ARR14(2)         <------ --->ALFIN1          --------->YAB1          <---------GLK1(1)======================================= =============HOX2a_HOX2a     --------->ANAC58     --------->ANAC46<---------ARR14(2)        <------ZmHOX2a(1) ====================HOX2a_HOX2a        ================================MYC_MYB              xxxxxxxx -AtMYB61 ----------->HVH21   --------->ANAC46    --------->LBD16<---------MYB46(3)      xxxxxxxxxxxx ============HOX2a_HOX2a      --------->ANAC58   <---------LBD16--------->ALFIN1      --------->At4g35610 ------ANAC46 ------>ZmHOX2a(2)         <-------GAMYB     --------->SPL7         <------ZmHOX2a(1)   ggggtacgatcgctgatcgattagcataaaacatgccaggcctgttgaaatccccgagagtacgacgtggttccgcagcaagaggaatagctgcaggaat  5732800          --------->ETT(2)         <------NtERF2     <------MYB83     <------MYB46(1)    <---------AtMYB61    --------->MYB46(2)    --------->MYB111(2)    --------->MYB111(1)    --------->MYB55(2)    <---------DEAR3(1)    <---------MYB46(3)                      <---------ATHB12   <---------MYB55(1)                    --------->AtMYB61   <--------P                            --------->MYB46(3)                 <------ZmHOX2a(2)  <-------GAMYB              <-----------HVH21                            --------->WOX13(1) --->GLK1(2)                <-----------RAV1(1)<---------ANAC46         <------NtERF2 --->ARR14(2)           <-------GAMYB  ------>NtERF2                  --------->ALFIN1            <xx ----ARR14(2)     ------>NtERF2    --------->ANAC58                --------->DAG2                <--- ---GLK1(2)   <---------ETT(2)     <---------ETT(2)              ---------->DOF2                ----- =========MYC_MYB<---------ALFIN1  --------->ANAC58           xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---- xxxxxxxxxx>smallRNA(si3)<---------MYB52(1)------>MYB46(1) <---------At4g35610             <---------ANAC46 xxxxxxxx>smallRNA(fl3)<-----------RAV1(1) ------>MYB83    --------->At4g35610     --------->TOE2(3)   ctggggttggtgtcgatcgacacctctgttgtgtcgctcgacaccaatcgcgtcttcattctgctcccaaaggtgtcgatcaatacctctattgtgtaga  5732900                                                          --------->ATHB12                                                         ------>ZmHOX2a(1)                                                         <---------YAB1                                                       ------>ZmHOX2a(2)<---------ZAT2                                                       =====================HOX2a_HOX2a                                                 <------NtERF2          --------->TGA1a                                                 ----------->RAV1(2)    <---------O2                                                ------>NtERF2           <---------TGA1a                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <-----------RAV1(2)                           <---------ZAT2      --------->ANAC58      ------>ZmHOX2a(1)                   <---------ARR14(2)          --------->ANAC58   <------NtERF2            <---------At4g35610              <---------ANAC58    <---------SPL7            --------->At4g35610              <---------ANAC58   <---------ANAC58            --------->ZAT2 --------->At4g35610 <------NtERF2    <---------ANAC46         <---------ARR11(3)            <---------ZAT2 <---------At4g35610------>NtERF2     <---------ANAC58 <---------ANAC58            ----------->RAV1(2)             --------->ATERF1(1) <---------RAP2.6(2)  <---------AtLEC2   <xxxxxxxxxxxxxxxxsmallRNA(i)       ============================================bZIP_DOF xxxxxxxxxxxxxxsmallRNA(i) <------NtERF2<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ALFIN1 ---ZmHOX2a(2)  <---------ANAC58      <----------DOF2<---------ARR14(2) --------->ZAT2   --------->ARR11(3) ---->ARR11(3)  <---------ANAC46     <---------AtLEC2--------->ARR14(2) --------->O2--------->ZAT18 -----ARR11(3)  <---------ANAC58    --------->ZAT18 <xxxxxxxxxxxxxxxxsmallRNA(s) <---------ANAC58   tcaacaatgagccctgctgcgtctctggcagctaattgtgcattgaggcgcgcctgatcctcattggcgtcctcaggtgggatgagtgcatgatcatcca  5733000                                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                ------>ZmHOX2a(1)                   xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxx>smallRNA(s)              --------->At4g35610              xxxxxxxxxxxxxxxx>smallRNA(i)                   xxxxxxxxxxxxxxxx>smallRNA(s)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ZAT2<-----------HVH21        <xxxxxxxxxxxxxxxxsmallRNA(s)                       --------->At4g35610        ------>MYB83 <---------ANAC58     <---------CCA1(2)<---------At4g35610        ------>MYB46(1)        --------->TOE2(3) <----------DOF2<---------At4g35610  ----------->HVH21  <---------ANAC58   --------->YAB1  <---------At4g35610          *TSS   atctctgaccagcctcattgtaggcttgcccatcctcaactctcataactccttttgcatcagctctgatgactctgtcagccattgctaatctctgagt  5733100          <---------ANAC46          <---------ANAC58          <---------ANAC58         <---------ZAT18         <-------TEIL      <---------DEAR3(2)      <------MYB83      <---------MYB46(3)      <------MYB46(1)     --------->MYB111(2)     --------->MYB55(2)     <---------MYB46(3)     --------->MYB111(1)     <---------AtMYB61     <---------DEAR3(1)     --------->MYB46(2)                        <<<<<<<<<<WRKY26                           --------->At4g35610    <---------MYB55(1)                       >>>>>>>>>>WRKY26             <---------ANAC58<---------At4g35610    <--------P                    --------->ZAT14                         <---------ANAC58-----------   <-------GAMYB              --------->HSFB2a(2)           <---------MYB52(1)          <---------ALFIN1  <---------MYB46(3)          <---------HSFB2a(2)      ------>ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   tttttggttggtgcgttcaagttttcccaagtccagaacagacaagttgatcaactccttctgttatgtgctccttgtttgcctaggcatacacctgaaa  5733200                       <---------ANAC55(2)                       >>>>>>>>CAMTA3                       <---------ANAC58                             <---------AHL20(2)                       <---------ANAC58                             --------->AHL20(2)     --------->ARR11(3)                   --------->CCA1(2)                         ----------->GT1               <---------ARR11(3)                  --------->ARR14(2)                      --------->GLK1(2)       <xxxxxxxxxxxxxxxxxx                --------->ANAC58                      --------->ANAC58          xxxxxxxxxxxxxxxxxxxxx                --------->ANAC46         ----------->GT1 <---------GLK1(1)      <---------YAB1      -   ---------->DOF2<---------ARR14(2)   ---------->DOF2--------->ANAC58          xxxxxxxxxxxxxxxxxxxxx >RAV1(2)       --------->ANAC58 ---------->DOF2      --------->ANAC46        --------->YAB1  <------   cacagaaaagaagaaaacaagaaacgcgtgagtaacaaagtaaaagtaaaaactagacgaaatctgtaaattaaactcaatggtgattcccaagaacttt  5733300       <------NtERF2       ----------------->AGL1      ------>NtERF2     --------->DEAR3(1)    --------->RAP2.3(1)   <---------RAP2.3(1)                                                                     ----------   ------->GAMYB                                                                    <---------GLK1(1)   <---------ATERF1(1)       <-----------GT1                                <---------TOE1(3)  <---------DEAR3(1)   <-------TEIL                                         <---------TOE2(3) xxxxsmallRNA(le3)  ----------->GT1                         =========================HOX2a_HOX2a xx>smallRNA(fl3)  --------->DAG2                           <------ZmHOX2a(2)       --------->GLK1(1) -------->MYB52(1) <---------TOE2(3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xx>smallRNA(se3)  <---------TOE1(3)                       <---------ARR11(3)    ------>ZmHOX2a(2) ----DOF2          <---------------AtSPL8                  --------->ARR11(3) <------ZmHOX2a(1) <----   ggcaacggcgccaaatttgataaggttcaaattaccctaagaactactctctcaaataagagatcaattgcagtatttaaggatcgatttccacaaagtt  5733400                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                           <---------MYB46(3)                                                                                           <------MYB46(1)                                                <---------WOX13(1)                         <------MYB83       --------->ANAC58              <---------ZAT2      <---------YAB1                  <---------WOX13(1)       --------->ANAC58              --------->ZAT2    --------->YAB1                  --------->ATHB12    <---------ZAT18       --------->ICU4      --------->ATHB12                 ----------->RAV1(1) >DOF2 --------->ANAC46   <---------YAB1     <---------YAB1       ---------->DOF2    <---------WOX13(1) ---TEIL    <---------ATHB12    <---------TOE2(3)     --------->ICU4           --------->MYB52(1) <--   catttgttcacacaatgaattcaatgtcaagattaagctagcagggtatgattgaaattataagaaaacaaagtaagaagacaacagattgattggttgt  5733500                                                         ------>ZmHOX2a(2)                                                        <------ZmHOX2a(2)           <xxxxxxxxxxxxxxxx                                                       --------->ARR11(3)           <xxxxxxxxxxxxxxxx                   <------ZmHOX2a(1)                   <---------ARR11(3) <-------GAMYB     <---------AHL20(2)                                <---------AGP1    <---------MYB46(3)    --------->AHL20(2)                                 --------->AGP1    <xxxxxxxxxxxxxxxxsmallRNA(i) ----------->GT1  <------MYB46(1)                      <---------ARR14(2)--------->MYB111(2) -ANAC58          <------MYB83                    --------->MYB52(2)    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -ANAC46        <--------P  <---------ARR14(2)  <--------P            <------MYB46(1)   --------->TOE2(3) -ANAC58 ---------->DOF2    --------->ARR14(2)<---------MYB46(3)      <------MYB83 --------->MYB46(3) -------DOF5.7(2)--------->MYB59          --------->ATHB12     ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxx   aaacgattaaataaagaggtaggaacagggtattctcagaaaaactattggttagtagatctaatgaaagctaggttgttatcgaaccattcttaaactc  5733600  Previous    Next  AGI:  At2g13730.1    Description:  transposable element gene Range:  from: 5732639    to: 5733085    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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