Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------ALFIN1              --------->AtMYB61                                               --------->TOE2(3)             --------->MYB46(3)                                               --------->TOE1(3)           --------->ANAC46                                              --------->LBD16           <---------ALFIN1                                              <-----------HVH21        --------->ANAC58                                                --------->ANAC46        --------->ANAC58                                                --------->ANAC58      <---------ARR14(2)                                                <---------ANAC55(2)      --------->ARR14(2)                                                --------->ANAC55(2) ----------->RAV1(1)  <---------ANAC58                                  --------->ANAC58   --------->At4g35610 ---------ALFIN1      <---------ANAC58                                  --------->ANAC55(1)--------->GLK1(1) -------->RAV1(1)   <-----------ARR10                ------->GAMYB   ------->TEIL     <---------LBD16 --At4g35610 <---------MYB55(2)           ------>MYB83    --------->ANAC58 <---------ARR14(2) ->At4g35610------>NtERF2                 ------>MYB46(1) --------->ANAC58 --------->ARR14(2)   caacaccagaaccccaccaccatttcttcccttcaaactcaacctagcatcgtaaccctcactcaaacccgaacccgtaacctcaatcttcggagctcta  5715600                          --------->ARR14(2)                          <---------ARR14(2)                          ------->TEIL                          <---------ARR11(1)                         <---------ARR14(1)                      <------NtERF2                  <---------ANAC58                  <------MYB46(1)                  <------MYB83                  <---------ANAC58    --------->RAP2.6(2)                 <---------AtMYB61    ------->GAMYB               --------->CCA1(2)    -------->P                                                      <               --------->ARR14(1)  ------->GAMYB                                               <-----              <---------ARR14(2)   --------->MYB55(1)                                          ------              --------->ARR11(1)  --------->MYB46(3)                                         <-------              --------->ARR11(3)  <---------MYB52(2)                                      <----------              <---------ARR11(3)  <---------MYB55(2)                                 ----------->HVH21              --------->ARR14(2)  <---------MYB111(2)    ------>ZmHOX2a(1)       --------->ZAT14 ----            ----------->ARR10  --------->REM1(1)   <<<<<<<<<TBF1                 <---------ZAT14<----   aaactctcagaacgaagatttggtgtcgaatctacaacaaccgcatcatcttcttcttcctgagtggtctcggtctcttgcattgtagtgacggtcggat  5715700                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                             ----------->ARR10                                         --------->LBD16                                       <---------LBD16                                       ------>NtERF2                                   ----------->HVH21                                  ------>ZmHOX2a(2)                                 --------->ARR14(1)                                 <------ZmHOX2a(2) <-----------ARR10              --------->AGP1 --------->ARR14(2) <---------ARR14(2)             <---------ARR14(2) ------->TEIL                   --------->ARR14(2) <---------ARR11(1)             <---------ARR11(3) --------->GLK1(2)              --------->ARR11(3) --------->ARR14(2)           ----------->ARR10<---------ARR14(2) ---------ARR14(1)     ----------->GT1<---------O2 ----ARR14(2)          --------->LBD16--------->TGA1a                                          <----- --->ARR14(2)        <---------LBD16  ======================================bZIP_DOF <---------ANAC46 --DEAR3(2)        --------->ARR14(2) <---------TGA1a                   <---------ARR14(2)    ------- -HVH21            <---------ARR14(2) --------->O2               ---------->DOF2    <---------LBD16 -->ZmHOX2a(2)   --------->ANAC46--------->CCA1(2)      <---------TOE2(3)        <----------DOF2   <- --ZmHOX2a(2)    ----------->HVH21--------->DEAR3(2)   <-----------GT1  --------->ARR14(2)    -------   ccgaatctatgggtgaaacccgacccggtgataagatccgacgcgggtcgatccgatttacgatgtttaaagcagatttagagctttgcggtgagcaagg  5715800                 <---------At4g35610                 --------->ZAT2                 <---------ZAT2                 --------->At4g35610                                               <---------DEAR3(1)              --------->ZAT2               <---------ANAC55(2)                    <-------TEIL              --------->At4g35610          --------->ANAC55(2)                    --------->SPL7 <---      --------->MYB59                   <---------ARR14(2)                       --------->ALFIN1---- ----MYB52(2) <---------ZAT2<---------At4g35610                                 <---------SPL7 ------ -->ANAC58    <---------At4g35610      <-------GAMYB                 --------->ARR14(2)   ---------->DOF2 ----------------AGL1       --------->At4g35610        --------->TOE1(2)      <---------------AtSPL3 -->ANAC58   <-----------RAV1(1)      <---------MYB46(3)            <------ZmHOX2a(1)   ---------->DOF2   aaccagtttaggtctctgctgctgagatttagctggaatgtggttacgagatgaaatcgaacgagtatcaggactcgctggaggtacggcgaaagagcaa  5715900                                          <------MYB83                                         --------->MYB111(1)                                         --------->MYB59                                         <---------TOE2(2)                                <---------RAP2.6(3)                               --------------->AGL15                               <---------------AGL15                              <-----------------AG                              ----------------->AGL1                              ----------------->AG                              <------NtERF2                              <-----------------AGL3                              <-----------------AGL1                              ----------------->AGL3           <------NtERF2      <-----------------AGL2          <---------DEAR3(2)  ----------------->AGL2          ------>NtERF2   --------->At4g35610         <---------DEAR3(1)  ------>NtERF2<------MYB46(1)                                      <-----         <---------At1g77200--------->ALFIN1                                                   ======      ------>ZmHOX2a(2)   <---------At4g35610                                                <-------    <---------ARR11(3)    <---------ATERF1(1)           ----------->ARR10              --------->At4g35610  <---------YAB1         <---------DEAR3(1)    <---------LBD16 <------NtERF2           <---------ZAT2 ------ALFIN1           <---------LBD16  <---------TOE1(2)   --------->DEAR3(1)        <---------At4g35610 ----->REM1(1)        <-----------HVH21 <---------MYB55(1)  --------->ATERF1(1)        --------->ZAT2 ----->RAV1(1)       <---------GLK1(1)  <--------P   <-----------HVH21      <---------ANAC55(2)<-----   caccatgatcgtcggcgagatagatgtccggtgccgaaattggtaggtttacggaggtcagagtcgcccattgtcatcaagtgagagagagctggtgaag  5716000                                                                                                <----                                                                                               ------                                                                                               <-----       <---------REM1(1)                                                                    ---------   --------->DAG2                      <----------DOF2                                   <----------DOF2  ---------->DOF2                      *TSS                                           <-----------GT1 ----TGA1a                            <---------ANAC58                            <----------DOF2 ============bZIP_DOF                 <---------ANAC58                          <xxxxxxxxxxxxxxxxxxxx --ZAT14                        <-----------RAV1(1)             --------->AtLEC2---------->ID1<------ ----ANAC46                   <---------ANAC46            <----------DOF2      <-----------GT1-------   tgagtaaagttgtagtctgagagattactgttttgtgttggctttctatttctgtttcttctttttatgcaaacttgtttttttctttttactttcatca  5716100    <---------ARR11(3)    --------->ARR11(3) --------CBF                                                                   <-------TEIL --->ATHB12          --------->YAB1                                          <---------ARR14(2)   <-- ----ICU4    <------------CBF                                              ----------->GT1  --------- >YAB1     <---------ARR11(3)     <---------WOX13(1)                    --------->ALFIN1   <---------YAB1 xxsmallRNA(i2)     <---------ATHB12   ------------>CBF                ------->MYC3        --------->ICU4 ---YAB1   --------->ARR11(3)    <------------CBF         <---------AHL20(2) --------->ARR14(2) <---- -->ICU4  <<<<<<<<<RAP2.2   ----------->GT1          <-------TEIL      <-------MYC3      --------->YAB1   ttgttagattttagatattgaaatcatacatggttaattgacacaattccctagattcatttttttttgaacatgtgtggatacattgctgtcatgattt  5716200               ------>MYB46(1)             <---------MYB59           ------>MYB46(1)           -------->P           ------>MYB83          --------->MYB55(1)                                                          --------->DAG2         <---------MYB59                                                             ---------->DOF2         <---------MYB46(2)                                                  --------->ATHB12         <---------MYB111(1)                      <---------TOE2(3)          <---------AHL20(2)  --------->AHL20(2)                    --------->AHL20(2)                  --------->AHL20(2) -------YAB1 --------->TOE2(3)          <---------AHL20(2)               ============================ >ATHB12 <---------MYB111(2)            <---------AHL20(1)               --------------->AGL15   <--- -----AHL20(2) ------>MYB83             --------->AHL20(1)             ------>ZmHOX2a(1)         <---   aaaattgaataccaacctaattcaatttttcttcaaaaacattttattgtttaagttttagttcataaacatcctctatttattgaaaaaagtttttttt  5716300                                   <---------YAB1                                  <---------AHL20(1)                                  <---------AHL20(2)                                <---------YAB1                              <---------ICU4                              --------->YAB1                                          <-----------GT1          ----------->RAV1(1)<---------YAB1                     <---------ANAC58   <---------AHL20(2)      --------->ANAC58    <---------AHL20(1)                    <---------ANAC58  --------->AHL20(2)      --------->ANAC58    --------->AHL20(2)                 <----------DOF2      <---------AHL20(2)  <-----------HVH21       --------->AHL20(1)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --- ====================================MADS_MADS            --------->ARR11(3) --------->AHL20(2)  ---- ------YAB1               <---------AHL20(2)          <-----------GT1        <---------AHL20(2)xxxxxx ------AHL20(2)      --------------->AGL15         <----------DOF2      <---------ATHB12 <----------DOF2   ttattgtcaagccaacaaattttctaaatttattattatttttgtttcattttcttttactatctttcttgccaaacatttaaatttttttcttttggtg  5716400                                               <---------ARR11(3)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        <---------ZAT18                                        --------->ZAT18                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              -----------                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 -----------                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <--------ATHB1                                    --------->DAG2               <---------ARR11(3) --------->ATHB51        --------->AHL20(2)         ---------->DOF2            <-----------GT1       --------->YAB1        <---------AHL20(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)               --------->AHL20(2)      --------->AHL20(2)       --------->AHL20(2)            <-----------GT1        <---------ICU4     <---------AHL20(1)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ARR11(3)<---------ATHB51     --------->AHL20(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <----------DOF2  <-------    --------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <----------DOF2<---------ATHB12 < -------->GT1            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<---------AHL20(2)     --------->ICU4   < ------->GT1           ---------->DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->TOE2(3)<-------- xxxxxxxxxxxxxxxx>smallRNA(le3)<---------AHL20(2)           --------->AHL20(2)   --------->YAB1    <-   agttaaatatatatatactcagaaaaaaagaaattaaaaaagtgtgctagataattctatatttaaacatctttcttcctttacaataatttctgacgtt  5716500  Previous    Next  AGI:  At2g13690.1    Description:  PRLI-interacting factor, putative. similar to PRLI-interacting factor-related [Arabidopsis thaliana] (TAIR:AT1G63850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46420.1) Range:  from: 5713589    to: 5716039    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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