Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ------>ZmHOX2a(2)                           --------->GLK1(1)                           <------ZmHOX2a(2)                           <---------GLK1(1)                          --------->ARR14(2)                          <---------ARR11(3)                          --------->ARR11(3)                          --------->AGP1                          <---------ARR14(2)              <---------TOE2(3)                          <---------AGP1            ------>ZmHOX2a(2)                               -                         <---------At4g35610      <---------ARR11(3)                               <-               ---------->DOF2                    --------->ARR11(3)                               --            --------->TOE1(3)     <------ZmHOX2a(2)<------ZmHOX2a(2)  --------->At4g35610          <-  --------->At4g35610    <---------CCA1(2)    ---------->DOF2         ----------->GT1  ------->GAMYB<  <-----------------------TaNAC69(2)   <---------At4g35610<---------YAB1           --------->ANAC46<- -YAB1      --------->TOE2(3)   XXXXXXXXXXXXXXXXXXXX>MIR843     ---------->DOF2  --------->ANAC46 ---   aagtagcttaataacattaaagtcttcagatctcagatcgaagctcattaaagatcgtttatcgttgaaagaagctaaataatacacaaccccattccag  5692100            ------>ZmHOX2a(2)           <------ZmHOX2a(2)           --------->CCA1(2)          --------->ARR11(3)          --------->AGP1        --------->ZAT14          <---------ARR11(3)    <---------ARR14(2) -------->ARR14(2)              --------->ARR14(2) --------CCA1(2)      --------->YAB1 ------->GLK1(1)     ----------->TGA1 ---------TaMYB80  <---------ICU4                                                              ------ ---------ARR14(2) --------->YAB1                                         <---------ZAT6     -------- --------GLK1(1)--------->YAB1  <---------ZAT14                           ----------->GT1    ------>ZmHOX2a(1) ------->TaMYB80<------ZmHOX2a(1)                                      ------>ZmHOX2a(1)     <-------   catatcccttgagatctaggataatgacgatgagtatacttacattcgagcattctccatttttgttttgctcctagagtgaaaacttgatgctcctctg  5692200                       ------>MYB46(1)                       ------>MYB83                     --------->AtMYB61                    --------->HSFB2a(1)                    <---------HSFC1(2)                    --------->HSFC1(2)                    <---------HSFB2a(1)                                                          ----                   --------->ARR11(3) --------->ALFIN1                                --------->TOE2(3)           <---------ALFIN1   --------->AHL20(2)          ---------->ID1             --------->ATHB12           ----------->RAV1(1)--------->YAB1  <---------ALFIN1                       --------->YAB1        ------>ZmHOX2a(1)    <---------ATHB12------>ZmHOX2a(2)                       <---------ICU4 - ----->HVH21       <-----------ARR10 ------->MYC3<-------MYC3          <---------ALFIN1         <---- ->At4g35610      <------ZmHOX2a(1)  <-------MYC3------->MYC3       --------->ANAC46<---------ATHB12< --At4g35610      ==================================HOX2a_HOX2a --------->AtLEC2    --------->ICU4 <-   acatagactcctcccacataggaccttcccaattaaaaacgtggtgatccacgtttagttgtcgtcttgcacaacactttgtacaaatcattaactggat  5692300                                                                        -------->ATHB1                                                                        <---------ICU4                                                                        <--------ATHB1                                                                        --------->YAB1                                                                        --------->ATHB12                                                                        --------->ATHB51                                                                       <---------ATHB12                                                                       --------->ICU4                                                                     --------->WOX13(1)          ----------->GT1                                       <---------GLK1(1)  =========================================MADS_MADS            --------->GLK1(1)  ----------------->AGL3                                  <---------TOE2(1)  ----------------->AGL2                   <-------TEIL   <---------TOE1(1)   <----------DOF2 ----->YAB1                          ---------->DOF2   --------->LBD16 <---------YAB1<---------YAB1 -------->ARR14(2)             --------->TOE1(1)      --------->ANAC55(2)    <---------ANAC58 --ZmHOX2a(2)                 ------>ZmHOX2a(1)      --------------->AtSPL3  <---------ANAC58       - ---------ARR14(2)         <---------------AGL15 ----------->HVH21  ------------>ATHB5              < --------CCA1(2)       <----------DOF2    --------->CCA1(2)   <------ZmHOX2a(1)    <---------ZAT6   <   catatccaaaaacagataatatgttctttctcctcgtagtaaagatacaaactgacccgtactaggatttccaatcattgctttagtattatttctacag  5692400                                                                                       <------ZmHOX2a(1)                                                                            ----------->RAV1(2)                                                                         =====================HOX2a_HOX2a                                               --------->YAB1            ------>ZmHOX2a(2)                                        ------>ZmHOX2a(2)               =============HOX2a_HOX2a              --------->MYB55(2)       --------->CCA1(2)                ======================HOX2a_HOX2a              <---------MYB46(3)       <------ZmHOX2a(2)          --------->MYB52(1)<-----------RAV1(2)          ----------->HVH21           <---------ARR14(2)       ---------->DOF2------>ZmHOX2a(1)       --------->TOE1(2)              --------->ARR14(2)  --------->ATHB12 ------>ZmHOX2a(1) <------ZmHOX2a(2)                    <---------ARR11(3) <---------YAB1 <------ZmHOX2a(2)           < -------->ARR11(3)                    --------->AGP1     --------->ICU4<---------ARR14(2)        <--- -----------ARR10--------->ALFIN1     <---------AGP1  <---------TOE1(1)--------->ARR14(2)        ---- ---------ARR11(3)----------->GT1   ----------->ARR10 <---------TOE2(1)<---------GLK1(2)    ---------   aagatcaaaccctcgacgggtggagaaaacaggtaccctagatccgaattcatagtacgatgattaaaagacggatcctcctgagagcaggagtgaaaga  5692500                                                                                            <--------                                                                                          --------->LBD16   <---------At4g35610                            ---------->DOF2                        <---------ANAC46   --------->At4g35610                 ------------>CBF   --------->ANAC58              <---------LBD16  ------->TEIL                        --------->ANAC46 <------ZmHOX2a(2)             <---------At4g35610 -------TEIL                          --------->ANAC58<---------ARR11(3) <------MYB46(1)<---------At4g35610 ------At4g35610                      --------->ANAC58--------->ARR11(3) <------MYB83--------->At4g35610 ----->At4g35610              ---------->DOF2 <----------ID1           <--------P   <-----------RAV1(1) ->DOF2<---------AtLEC2  ----------->GT1  <------------CBF--------->ANAC58        <----------DOF2   gctgcatctgcatgttacgacgatagactgtgaaaagaagacgcaattgagccaaagatcaagtcatgtacaagttggtgaagtctttgctgcggattat  5692600                          <---------ZAT2                          <---------STY1(2)                          --------->STY1(2)                          --------->ZAT2                         ------>MYB46(1)                         ------>MYB83                    ------>MYB83            <---------MYB52(1)                    --------->MYB52(1)     <-------GAMYB                    ------>MYB46(1)       <---------ANAC58                  --------->AtMYB61       <---------ANAC58                      <----------DOF2 -GLK1(2)         <---------MYB59      <---------GLK1(1)                    <---------CCA1(2)   <----   cgatgactagtgattcaaaacctaacctagctaggctatggatttcgttggcaacttcatttgaacgcggtcgtattcatctcttttttcttctggtttc  5692700                                                                                            <--------                                                                                            <--------                                                                                          <---------REM1(2)                                                                                         <-----------HVH21                                                               <---------AHL20(1)      <---------DAG2                                                               --------->ARR11(3)      <----------DOF2             <----------DOF2                                   <---------ARR11(3)   <-----------GT1          ---------->ID1                                      --------->CCA1(1)  ------>MYB46(1)      <---------ANAC58                                        --------->RVE1(1)--------->TOE2(3)   <-      <---------ANAC58                ------>ZmHOX2a(1)  <----------DOF2       <---------MYB59 <----- -----ANAC46 <---------DAG2    <-----------GT1    ---------->DOF2 <----------DOF2------>MYB83--------   ttagacttccttgcccttttcttcatggtgatttcacttcctctcatagaagttaagccctttaatatcttttactcttaacctaataacttttcacggc  5692800                                                                                         <----------DOF2                                                                                 --------->DAG2                               --------------->AGL15                             --------------->AtSPL3 -LBD16                        <----------DOF2          --------->TOE2(3)        --------------->AtSPL8 -At5g28300        --------->ANAC55(2)      ----------->GT1                      <---------------AtSPL8 ----------TBP     <---------ANAC55(2)   --------->GLK1(2)                      ---------->DOF2 ----------------WRI1          <---------DAG2        <-----------GT1    <---------AHL20(2)         <- ->ANAC46   ----------->GT1    ======================================================================   gatatatactaatatagtaatatgtattcaaaacttttttgagaatttgtaaataaaacctcatattttgaaattttaacagaaaagtactcttttgttt  5692900                                                      ----------->RAV1(1)                    <------MYB46(1)                                                   --------->ANAC58                          <-------                                                   --------->ANAC46                      <---------ICU4                        ----------->GT1            --------->ANAC58                      --------->ATHB12                      <---------YAB1              <-------TEIL<-----------RAV1(1)       --------->ICU4                  ------>ZmHOX2a(1)              --------->ARR14(1)                     <---------YAB1                 --------------->AGL15           --------->CCA1(2)                    --------->YAB1                 <---------------AGL15          <---------GLK1(2)                     <---------ICU4                 --------->TOE2(3)              --------->ARR14(2)                   --------->ICU4             --------->GLK1(1)                  <---------ARR14(2)               --------->ANAC58             <---------GLK1(1)                  --------->ARR11(1)      --------->ANAC55(2)  <------MYB83  <---------ANAC46<----------DOF2             ----------->ARR10         <---------ANAC55(2)<---------WOX13(1) ---------DOF2<---------ARR14(2)              <---------YAB1 <---------YAB1      --------->ANAC58 ================================MADS_MADS    <---------TOE2(3)     <----------DOF2--------->YAB1  <-   tctttggtgtaatggaaatcctttatgagtaaaaaatgtaatagaattaagattcgccacaatattgttgcattaagtaagacactcatcatgattggtt  5693000  Previous    Next  AGI:  At2g13630.1    Description:  F-box family protein-related. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G04660.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 5691620    to: 5692513    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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