Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------YAB1                --------->ICU4              --------->YAB1             <---------YAB1             --------->ICU4           <---------ICU4               <---------MYB46(3)           --------->YAB1             <-------GAMYB           -------->HAHB4          <---------At4g35610          --------->ICU4           --------->At4g35610        --------->YAB1         <---------ARR14(2)        <---------ICU4         ------->TEIL                                   <----------DOF2       --------->ICU4          --------->ARR14(2)                          <-----------GT1<---------ANAC58       <---------YAB1    <---------MYB46(3)         <-----------RAV1(1)  <---------MYB52(1)     --------->YAB1    <-------GAMYB <-----------RAV1(1)                <-------GAMYB  ------>ZmHOX2a(1)    ----------->GT1   <-----------RAV1(1)         <----------DOF2      <---------MYB46(3) <---------ANAC58   ttgaaactgataattatgatgattctgttgttgaatctgctgttgttgttgtctttgttgttgttgttttgggctgttaactttctctccttcggtgtct  5663200                               --------->ANAC46                               --------->ANAC58                               --------->ANAC55(2)                               --------->ANAC58                               --------->bZIP60(2)                               --------->O2                               <---------O2                  <----------DOF2                                          --------->At4g35610                <-----------------AGL3                                --------->bZIP60(1)       <----               <---------ARR11(3)                                   --------->YAB1 --------->YAB1               --------->ARR11(3)   <---------ZAT6     <---------YAB1 <---------bZIP60(1)     ------>ZmHOX2a(1)   ctatatttgcagaggtagacctttaatggagccacgtagtcttcgaaaccgagagttgtgatagcccaaatgatatcatctccattgatggtcttcctct  5663300                                                                                                    <                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                               <-----                                 --------->bZIP60(1)                                           ------                                 <---------bZIP60(1)                                           <-----                                 --------->ANAC58                                          ------>ZmHOX2a(2)                    <---------HSFC1(2)                                                    <------ZmHOX2a(2)                 <---------At4g35610                                                     --------->ARR11(3)          <---------O2           --------->ANAC58                                        --------->AGP1          --------->O2        ----------->TGA1                                <---------ANAC58 ------     ----------->HVH21  --------->REM1(1)    <---------GLK1(1)           <----------DOF2 <---------ARR11(3)   <----------DOF2  --------->HSFC1(2)       ------->TEIL<---------GLK1(2)    <---------ANAC58<------ ------DOF2  <-----------HVH21----------->HVH21   --------->LBD16  ----------->GT1<----------DOF2<---   tttctctttgacacttgtcagaagcttcaccagtgacgaaactaatgaactccgagacacattcttgaacggtttctttagcgtcttttgagatcttacc  5663400            <---------DAG2         <---------ARR11(3)         --------->ARR11(3)   --------->LBD16  <---------LBD16 <---------LBD16 ---------DOF5.7(2) ------>DOF5.7(2)            <---------ETT(1) -------MYB52(1)          ------>ZmHOX2a(1) ----GAMYB  <----------DOF2  >>>>>>>>>>AtTINY2 ------------AGL1       ------>ZmHOX2a(2)         --------->MYB52(1)                       <--------- ----------->AGL1     <---------ARR11(3)      --------->ANAC58                         <------MYB46(1) ------------AGL2     --------->ARR11(3)      --------->ANAC58                         <------MYB83 ----------->AG     <---------YAB1  --------->ANAC58                               <-----------RAV1(1) ---At5g28300     --------->YAB1    --------->ANAC58             <-----------RAV1(1)  <---------AtMYB61 --------HVH21  <-----------GT1     --------->ANAC46           <----------DOF2     <---------MYB46(3)   gttaccgggaagaacttttttcatgatccttccgacattcgcaatgggaagaaaccggtcttgttctttgttgttgttgttgttgttgttggtctttgaa  5663500                                           ------>ZmHOX2a(2)                                 --------->GLK1(1)                  --------->ARR11(3)                     <---------At4g35610 --------->ARR11(3)      --------->YAB1           <---------ARR14(2)  ===================HOX2a_HOX2a  <-----------HVH21           --------->ARR14(2)  <------ZmHOX2a(1)     <---------ZAT18<---------ARR11(3)          <----        --------->LBD16      --------->LBD16      --------->HSFB2a(2)                          <-----        ------>ZmHOX2a(1)   <-----------RAV1(2) ----------->RAV1(2)<---------CCA1(2)         <-------    <----------DOF2  --------->At4g35610 <---------ARR11(3) ------>ZmHOX2a(1)      ---------->ID1  <- -DOF2 <---------LBD16      <---------LBD16========================HOX2a_HOX2a <----------DOF2-------   gaagggcttcctggatttgtttcagctactccaggagacccatgatcttcttctgggctctcctcagtcatatctctatctctttgtttttttttgtgat  5663600                                                                                           --------->ARR14(2)                                                                                           <---------ARR14(2)                                                                                          ------>MYB83                                                                                        <------------                                                                                        -------------                                                                                        <---------MYB59                                                                                        ------->GAMYB                                                                                       --------------                                                                                       <-------------                                                                                       --------------                                                                                      ------>MYB83                                                                                      -------->P                                                                                      ------>MYB46(1)                                                                                      --------->ANAC58                                                                               <---------ANAC58                                                                    <-----------TBP   --------->ANAC58                                                                  <---------------AGL15<-------------                                                                  ===================================                                                                  --------------->AGL15--------------                                                                 ====================================          ------->MYC3                                           ====================================      --------->MYB46(3)             <---------At4g35610         <-----------------AGL3<-------------    <-----------GT1           <---------TOE1(3)                  ----------------->AGL3<------------- -----WOX13(1)                <---------YAB1                     ----------------->AGL2-------------- -------CBF       --------->WOX13(1)<---------TOE1(3)        <----------DOF2   <---------ANAC58   --- --YAB1------->GAMYB          <---------TOE2(3)   ------->TEIL   <-----------------AGL2--------->MYB46(3) --------TOE2(3)------------>CBF    <---------TOE2(3)  --------->ANAC46 <---------TOE2(3) ------>MYB46(1) -->ATHB12<-------MYC3     <---------AHL20(2)<---------AtLEC2<---------DAG2 <---------GLK1(1)     <--   tgatgttaaccacatgtgatcaatctgattttatggttaagcttagtgcatgaaactaggcaacttttctatttatggataccttgccaaccaaatttgg  5663700    --------->ANAC46    --------->AtLEC2 ---AGL15 -->AGL15 --->AG ----AGL1 --->AGL1 ----AG                                           <-----------GT1                                <--- ====MADS_MADS                                 --------->MYB52(2)                        --------->ANAC55(2) --->AGL3              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <---------ANAC55(2) ====MADS_MADS        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                ----------->GT1 ===MADS_MADS         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               --------->YAB1 ----AGL3            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              --------->ICU4 ----AGL2            <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               ----------->GT1 <---------ATHB12 --->AGL2           <------------------------ANAC81                --------->DAG2   --------->WOX13(1) ------>GLK1(1)  <----------DOF2         <----------DOF2          ---------->DOF2 ------------>CBF -------GLK1(1)  <---------DAG2       <-----------GT1        ---------->DOF2--------->AHL20(2) ------   aactccatgcgactcgctcctttttttttttttttttttttttctttgttatttgccagataataaagaaaagtgtaagaaaatagcaatcatgtaacat  5663800                                  --------->LBD16                                 --------->ANAC55(2)                                 <---------ANAC46                                 <---------ANAC58                                <---------LBD16                              <-----------GT1                         <---------YAB1                      --------->AHL20(2)                      <---------AHL20(1)                                 --------->YAB1                      --------->AHL20(1)    <---------AHL20(2)        --------->YAB1           ------            <---------ZAT6 <---------AHL20(2)                     --------->AHL20(2)           <----- ---------CBF         <---------AHL20(2)<---------YAB1         --------->YAB1                 <------ --->ARR11(3)    ------------>CBF<---------ANAC58       <---------ETT(2)<---------YAB1   <----------DOF2   attgtcatcaaatagtgttttcaatttattattttccgtagtatgtttatttagtatgtagacaactataaattatcatgtctccataatgctttgattt  5663900                                                                                     <xxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                             --------->ZAT18                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          ---------->DOF2                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      --------->ANAC58                                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                      --------->ANAC55(1)                                                                      --------->ANAC55(2)                                                                      <---------ANAC55(2)           <                                                                      --------->ANAC58            ---                                                                      --------->ANAC46          <xxxx                                               <-------GAMYB          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              ----------->GT1        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     --------->AHL20(1)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       ----------->GT1          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->YAB1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-----------------AGL1 <xxxxxxxxx    --------->YAB1            ----------->GT1 <---------MYB46(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------YAB1            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->AHL20(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----AHL20(2)    ------>ZmHOX2a(1)   <---------AHL20(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<x ---WOX13(1)    --------->TOE2(3)   --------->AHL20(2)    --------->LBD16---------->DOF2  xxxxxxxxxxx   attgtattatagtaatttcctaaactctagcctggtaaatatatatggtggttatttatccgagaatattacacgtaaaggcactattttgaaactttgg  5664000            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <----------DOF2           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxsmallRNA(si3) xxx>smallRNA(le3)                                        --------->LBD16           >>>>>>>>>MYB98 xxxxsmallRNA(le3)                                 <----------DOF2                 ------>MYB83 xxxsmallRNA(fl3)                                  <---------DAG2                  ------>MYB46(1) x>smallRNA(se3)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >smallRNA(fl3)---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------MYB59  <-- xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<xxxxxxxxxxxxxxxx -------->RAV1(1)            <----------DOF2  <-----------GT1       --------->MYB52(2)           <--- xxxxxxxxxxxxxxxxxxxsmallRNA(l2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<---------MYB52(1)xxxxxxxxxxxxxxxxx xxxxxxxsmallRNA(i)          <---------DAG2  <-----------GT1     --------->TOE2(3) --------->MYB52(1) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxx>smallRNA(i)      xxxxxxxxxxxxxxxxx>smallRNA(si3) <---------LBD16  <-----------GT1      <------   ccacaaataggcactttaaaagcattagtcactttaactcagtagaattacccctttaccctgaaatcgttagtttaacaaaacctaacaaatttagccg  5664100  Previous    Next  AGI:  At2g13570.1    Description:  CCAAT-box binding transcription factor, putative. Identical to Nuclear transcription factor Y subunit B-7 (NFYB7) [Arabidopsis Thaliana] (GB:Q9SIT9;GB:Q1PF75); similar to CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family [Arabidopsis thaliana] (TAIR:AT4G14540.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71881.1); contains InterPro domain Transcription factor, NFYB/HAP3, conserved site; (InterPro:IPR003956); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Transcription factor, CBFA/NFYB, DNA topoisomerase; (InterPro:IPR003957); Range:  from: 5662924    to: 5663571    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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