Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------MYB52(1)    <-------GAMYB                                                                               ----- ----------->AtMYB77                                                                      <xxxxxxxxxx ------->MYB46(3)                 <--------P                                            <----------DOF2 ----->MYB52(1)                  --------->At5g28300                                    <---------DAG2 -->GAMYB                        <-------GAMYB                                          xxxxxxxxxxxxx ----MYB46(2)                  <---------DEAR3(1)                                      <---------ANAC58 ----MYB111(2)                --------->ZAT18                                          <---------ANAC58 ----MYB111(1)                <---------ZAT18  --------->GLK1(2)                <---------YAB1  ----- --->MYB46(3)            ---------->DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------AtLEC2 ----MYB52(2)     <---------WOX13(1)      ---------->DOF2                    --------->GLK1(2)  <---- ----MYB55(2) <---------MYB52(1)<---------MYB46(3)                          <---------GLK1(2)   <----   aacgacagttgtttctgttaattgaacaaaagcgcggttgatcagaaagaatcagaggcttattgtcttaaatcgacatattctgaatggctttatccag  5643600             ------>ZmHOX2a(1)             <---------YAB1            *TSS           ------>ZmHOX2a(2)         --------->ARR14(2)         <---------ARR11(3)         --------->ARR11(3)         --------->AGP1         <---------ARR14(2)        --------->GLK1(1)        <---------GLK1(1)       ----------->ARR10   --------->YAB1  --------->ICU4 ---->ZAT2<------ZmHOX2a(2)                <-----------HVH21 xxxxxxxxxxxxxsmallRNA(le3)        <---------HSFB2a(2)       <------ZmHOX2a(1)                    --- xxxxxxxxx>smallRNA(se3)           --------->HSFB2a(2)      --------->ANAC58                 -------- ---->At4g35610                   <-----------------AGL1    --------->ANAC58            --------->ZAT14 -----At4g35610      ----------->GT1--------->LBD16         --------->ANAC46            <---------ZAT14 -----ZAT2--------->GLK1(2)    <----------DOF2            <---------AtLEC2  ----------->GT1  <-------   ctccatgatgagatcctgatagagagtaaacaactttcccgaactcgtcaaacctgatttgcaggaaacaaactccaagagaaaaaacagtgaagaaatc  5643700                        --------->ZAT14                        <---------ZAT14                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      --------->ANAC46                   ------>MYB83                                                         <------ZmHOX2a(1)                   ------>MYB46(1)                                                   <---------LBD16                  ----------->RAV1(1)                                            --------->GLK1(2)                 ------->GAMYB                                                   <---------ARR14(2)        <---------At4g35610                                                      --------->ARR14(2)        --------->At4g35610                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ANAC58                  -------->P --------->LBD16 ------>LBD16    --------->AtMYB61      --------->ANAC58    ---------->DOF2    ---------->DOF2 ->GLK1(1)      --------->MYB46(3)    ---------->DOF2--------->MYB52(1) --------->MYB46(3) --GLK1(1) --------->YAB1          --------->YAB1 --------->ANAC55(2) --------->AGP1<---------TOE1(1)   cgagtaattcagatgataaccaacacagaactgagaatcacaaagcaaactctcgtaacagagaaagagtcagaactaccaaaaatccgaggaagaaaac  5643800                          <---------ICU4                    <---------ANAC55(2)                    --------->ANAC46                    ----------->GT1                    --------->ANAC55(2)                    --------->ANAC58                    --------->ANAC55(1) --------->HSFB2a(1)                    --------->ANAC58    --------->ZAT2                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                ------>MYB46(1)         --------->At4g35610                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                ------>MYB83            --------->HSFC1(2)              <---------MYB59           <---------HSFC1(2)             <--------------OsCBT  <--------P                              <----------DOF2             --------->DEAR3(2) <---------HSFB2a(2)          --------->TOE1(2)            --------->SPL7<---------AHL20(2)  <---------MYB52(1)     ---------->DOF2          <---------SPL7 --------->ICU4 <---------HSFB2a(1) ----------->RAV1(2)           --------->MYB52(1)          ----------->HVH21     --------->HSFB2a(2)         --------->At4g35610          --------->AHL20(2)   aacaatttagaccggaccgaacacgtaaatatttctggtagaagctccgttcagaatagaacacctgagagaaaagtctttaggctccaaattaactggg  5643900                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <----------DOF2                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                              --------->GLK1(1) <----                           <---------------AGL15                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         --------->At4g35610                                --------->ZAT18     -----            --------->RAP2.6(3)                          <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxx           <-----------GT1 --------------->AGL15       <---------DAG2       <---------ZAT18<---------At4g35610           --------->MYB52(1)       ---------->DOF2    <----------DOF2      --------->ZAT14--------->At4g35610          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----------->GT1       <----------DOF2  <xxxxxxxxxxxxxx   <------------CBF      <---------At4g35610 ----------->GT1      *TSS     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   acgactattgttttaacggctagtttcagctactaagagaaagaagagagagaaaaactttttgtcaaactctttttgtgaactccttttcttagatgac  5644000     <---------YAB1 xxxxxxxxxsmallRNA(si3) xxxxxxxxxsmallRNA(le3)             ----------->HVH21 xxxxxxsmallRNA(le3) <---------AHL20(2) >smallRNA(si3)      --------->AHL20(2)  --------->ANAC58 -----bZIP60(1)      --------->AHL20(1)  --------->ANAC58                                           - ---->bZIP60(1)     --------->AHL20(2)  <---------LBD16                  <---------ANAC46      ------ xxxxxxxxxsmallRNA(le3)         <-----------GT1                          <---------WOX13(1)<--------- xxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <------NtERF2 ---------->DOF2   <-   aacacttatgagaaaaaaaaaaaaaaattagttttgacgagacacggacataaaaaaaaaaactagggcagagtgactgataccaaaggagaaacaacaa  5644100                                                                                              ------>ZmHOX2a(1)                                                                                    --------->ANAC58                                                                                   --------->SPL7                                                                                   --------->RAP2.6(3)                                                                            <---------At4g35610    --------->MYB52(1)                                                 ----------------------->TaNAC69(2) <-----------------------TaNAC69(2)                                    --------->DAG2 <---------ZAT18 -------->CCA1(2)                                                     --------->DAG2--------->ANAC46 ---->DOF2                                                           ---------->DOF2--------->ANAC58 -ID1                                                          <---------DEAR3(1)<---------SPL7 ---------ID1        <---------LBD16                    ------>ZmHOX2a(1)   --------->At4g35610  ----   agagacgaactgaagaaaaacctctcggaagaagatgagcaattggaaaactcttctccttcgcatcggcgaaaagggacctgagtacggcacttcctcc  5644200                                                                                          -----------                                                                                     --------->GLK1(2)                                                                                    <---------ARR14(2)               <-----------TGA1                                                     --------->ARR14(2)         --------->AtMYB61                           --------->TOE2(3)       <----------DOF2   ---------->DOF2   <---------ARR11(3)  ------>ZmHOX2a(1)      --------->ZAT6      <---------GLK1(2) -->NtERF2     --------->TOE2(3)   <-------TEIL      --------->TOE1(3)       <---------DAG2        <-   gactacaaagaccacatcgtcagtatctctctctcgattcatcctcgctcttaaaccctaattttctcactactcaaaacttttccgattctctatatac  5644300                                                                                           <---------                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                                        <---------ANAC58                --------->ARR14(2)                                              <------ZmHOX2a(2)                         --------->ARR11(3)                                         --------->LBD16<---------ANAC58                --------->GLK1(2)                                        --------->HSFB2a(2)                             <---------AGP1              <-----------HVH21         <---------HSFB2a(2)                             <---------ARR14(2)           <---------ANAC58        --------->HSFB2a(1)  <---------ANAC46                <---------ARR11(3) ---->AGL15<---------ANAC58        <---------HSFB2a(1)  <---------AtLEC2               <------ZmHOX2a(1) -----ZmHOX2a(1)            --------->GLK1(1)--------->ARR11(3)                      <---------TOE2(3)   aggagacttgtttcggtgtcattcgtagagaaatcgagcgttctggagatcaagttttgcctgtaagtgacttcgagccttcaattttaggatctgttgt  5644400                        <---------ANAC46                        <---------ANAC58                        <---------ANAC58                   --------->ATHB51               <---------AHL20(2)    <---------YAB1               --------->ICU4       <---------AHL20(1)            <---------ARR14(2)     <---------ICU4                                                  <-  ------->TEIL <---------YAB1     --------->ICU4                                                   -- <---------CCA1(2)<---------YAB1  <---------YAB1                         <---------At4g35610   ------ --RAV1(1)  --------->ARR14(2) <---------YAB1                            --------->At4g35610  <------   gatgtatctctgtggatattattattgtgtgttctcattatttttgttttcgtcttaacagtttctactacaatgtgctgaacaattgcctcataagatt  5644500  Previous    Next  AGI:  At2g13530.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 5642557    to: 5643612    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g13540.1    Description:  ABH1 (ABA HYPERSENSITIVE 1). similar to nuclear cap-binding protein CBP80 [Oryza sativa subsp. japonica] (GB:AAG54079.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16822.1); similar to Initiation factor eIF-4 gamma, middle [Medicago truncatula] (GB:ABD32555.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain MIF4-like, type 1/2/3; (InterPro:IPR016021); contains InterPro domain MIF4G-like, type 2; (InterPro:IPR015174); contains InterPro domain MIF4G-like, type 3; (InterPro:IPR003890); contains InterPro domain MIF4G-like, type 1; (InterPro:IPR015172) Range:  from: 5643966    to: 5650039    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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