Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               <---------ANAC58                                                                             <---------ANAC58                                                                            <---------ZAT2                                                                           ------>MYB83                                                                 <---------ATHB12                                                                 <---------YAB1                   --------->SPL7                               ------>MYB83--------->ZAT2                 ----------->HVH21                           --------->ANAC55(2)                --------->TOE1(1)                            <---------ANAC55(2)               <---------HSFB2a(2)                --------->ATHB12      --------->ANAC46               --------->HSFB2a(2)               <---------YAB1 ------>MYB46(1)  <---------ANAC58       xxxxxxxxxxxxxxxx>smallRNA(i)             --------->ARR11(3)    --------->ANAC46    --------------->AtSPL8     <-----------------AGL1      <-----------GT1 ------>MYB46(1)    ------>ZmHOX2a(2)    <---------------AtSPL8  <----------DOF2     <---------ARR11(3)--------->YAB1 <---------ANAC58 ---   acgaagaaggtactcttctcggacccctctctttcccgttttcgacttaatatcattgaagtcacctatcatacaccaagcttgcttccgatgtgatcca  5642100                                                                                                   --                                                                                                   <-                                                                                                  <--                                           --------->At4g35610                                    ---                                           <---------At4g35610                                    ---                                        <---------At4g35610                                       <--                                    <-----------HVH21                     <---------DAG2 <---------ZAT14                                 --------->CCA1(2)               ---------->DOF2  --------->HSFB2a(2)   --------->ANAC46             <---------ARR11(3)         --------->ANAC58       <---------HSFC1(1)  <---------ZAT14               --------->ARR11(3)         --------->ANAC46       <---------HSFB2a(2)  --------->ZAT14             ----------->ARR10            --------->ANAC58       --------->HSFC1(1) ------>ZAT6        --------->TOE2(2) <-----------GT1  --------->ANAC46   <----------DOF2--------->ZAT14   agactacacaacttatcccaaacctaaggcctaagatatgtcaccagatgcccataaacacaagaaacaaagcatactttatttctagaagaacactgaa  5642200               --------->YAB1              <---------YAB1       <---------ARR11(3)       --------->ARR11(3)                                           --------->MYB46(3)   ---------->DOF2                                  ---------->DOF2------>NtERF2 ------->CCA1(2)                                  --------->HSFB2a(2)<---------ALFIN1 -----ZmHOX2a(2)                                  <---------HSFB2a(2)--------->AtMYB61 -------ARR11(3)            --------->TOE2(3)<---------DAG2       --------->RAP2.6(2) ------>ARR14(2)          --------->GLK1(2)  <----------DOF2   --------->ANAC58      --------->GLK1(2) ------>ARR11(3)         <---------GLK1(2)  <---------ANAC58   --------->ANAC58   <---------TOE1(3) -------ARR14(2)     ---------->DOF2        <---------ANAC58   --------->ANAC46   <---------TOE2(3)   gatccaaaagatgtttatcatcaaaaagaatctcaatgtccaaatggcttttccaaaagattgctaagccaccacttctcccttgaggttctattgtata  5642300             ------>MYB46(1)                                                         <---------YAB1             --------->ANAC46                      --------->YAB1                  --------->CCA1(2)             --------->ANAC58                     <-------TEIL                    --------->ARR14(2)             --------->ANAC58                   <---------ARR14(2)                <---------ARR11(3)             ------>MYB83  <----------DOF2      --------->ARR14(2)             --------->LBD16        <-----------GT1 <---------ARR11(3)     <------ZmHOX2a(1)      <---------AHL20(2)      <------     --------->YAB1<---------ATHB12       <-----------TGA1            --------->AHL20(2)  <---------AHL20(2)  ----------->GT1--------->WOX13(1)       <-----------HVH21   --------->AtLEC2<---------TOE1(1)   <--   catatagttataaccaagccaatcaataacttttgaaacaaactcgtcaggattcatagtctccatgaagaataaaatgtccgagatatgattttttttc  5642400                                                                      ------>ZmHOX2a(2)                                                                    *TSS                                       ----------->HVH21   ------>NtERF2                                  --------->ANAC58        --------->ANAC58    --------->MYB55(2)              <xxxxxxxxxxxxxxxxsmallRNA(i)                --------->ANAC58    <---------MYB46(3)  ---           <------NtERF2          --------->ANAC58      <------ZmHOX2a(1)    --------->ALFIN1--------      <---------TOE2(3)        ------>ZmHOX2a(1)        =====================HOX2a_HOX2a    <--------      <---------TOE1(3) <---------ATHB12              <---------TOE2(3)    ------->GAMYB   --------->MYB46(3)   ------>ZmHOX2a(1)   <---------TOE1(2)             --------->MYB52(1) --------->MYB52(1) <---------MYB55(2) -----GT1--------->ALFIN1  <---------GLK1(1)        XXXXXXXXXXXXXXXXXXXX>MIR169A <---------ZAT18  <-- -------At4g35610  <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------MYB52(2) --------->MYB46(3)   <---------ABI4(2)   atctccttaaggtgtcgaattgtccaaggattcctcaagccttgacaattccaactaaggacgccttactgatccaacggtggttcacttggaaccaccg  5642500                                                                                                    -                                                                                                    -                                                                                                    <     <---------CCA1(2)                                                                 <------ZmHOX2a(1)     ---------->ID1                                                                   <---------At4g35610 ------>ARR14(2)            --------->HSFB2a(2)                                       --------->At4g35610 ->MYB52(1)              --------->GLK1(2)            <----------DOF2               <-----------RAV1(2) -ALFIN1               <---------At4g35610         ---------->ID1<----------DOF2  <xxxxxxxxxxxxxxxxxx -------ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(i)   <----------DOF2 <---------DAG2<------ZmHOX2a(1)  <---   tattcttgtctctcttgaaactttgagcttctgtaatgtctgagggttttcttttccttttgaacaccttttcaaaatgaggagaggcaggagactgaat  5642600                                          <---------ZAT14                                         <--    <---------YAB1                       --------->LBD16                                          <-- -------->TOE1(3)                        ------>ZmHOX2a(1) <---------GLK1(1)                     <--- -------->TOE2(3)<---------ZAT2        ----------------->AGL1                           <---------ZAT14 ---------DAG2   --------->At4g35610   ----------->RAV1(2) --------->GLK1(1)<---------YAB1<---------ANAC46 xxxxxsmallRNA(le3)              <-----------GT1 ---------->DOF2------>ZmHOX2a(1)       --------->ZAT14 --------GT1     <---------At4g35610<----------DOF2   ----------->GT1       ----------->GT1 ---------   aaccttattcttcagagacagctcattaactagtttttctttcctgaactgaaaaggagtgaaatcctgcattatatgatgtttaaaccctgaagtggag  5642700                         <---------ARR14(2)                 --------->MYB52(1)                     --------->At5g28300                  <---------MYB52(2)                    ----------->GT1                      --------->ZAT2                  <-------MYC3                           <---------At4g35610             <---------ALFIN1                            --------->At4g35610            ------>MYB46(1)                              <---------ZAT2            ------>MYB83--------->GLK1(1)   <---------ARR11(1)           ----------->RAV1(1)              --------->ARR14(2)          --------->AtMYB61                 <---------ARR14(2) ---------ARR10   ------->MYC3              --------->GLK1(2) -------ARR14(2)------->MYC3             --------------->AGL15      --------->ARR14(2)             <- ---ZmHOX2a(1)  <-------MYC3            ----------------->AGL2 ---------->DOF2                     -- >ALFIN1 --------->MYB46(3)        <---------ICU4   --------->At4g35610  <---------LBD16    ---------   gaactagcctcaccaacacatgtggtaaatccagtactaatgtccaaatctagcatctcagctaacaaagtattctctggatgactatcaattgcaacag  5642800                 ------>NtERF2                --------->ATERF1(2)                <---------ATERF1(2)               <---------ANAC58               <---------ANAC58              --------->At4g35610           --------->GLK1(1)          --------->ARR14(2)          <---------ARR14(2)         <------ZmHOX2a(1)--------->At4g35610 ----------->HVH21       <-----------ARR10                                            <---------ARR11(3) --------At4g35610  ---------->DOF2                    ---------->DOF2        --------->At5g28300 ------->At4g35610<------NtERF2      <----------DOF2 ----------->HVH21  <---------ZAT2--------->ARR11(3) -->RAV1(1)<---------GLK1(1) -------->P            ----------------->AGL1    ----------->GT1     <---   tagctgatagaggatttgctggcaaagcatctacccttcctttgggagcaattgactgaaagggaaactcagccagcctcggtaaaaacatcttcttctg  5642900                            <---------YAB1                 --------->ARR11(3)                                                               ---                 <---------ARR11(3)                                      <---------YAB1           <--                <---------ICU4                                         --------->YAB1       ---------                --------->YAB1                                        <---------YAB1        ---------   <----------DOF2 ------>ZmHOX2a(2)                              <---------AHL20(2)        --------- ------MYB52(1)--------->ICU4          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         ----------->HVH21   tttgcctttctcttgtaatgatctcacatcatgtttgatggaatctaagactttggatgggcatctatttttatcatgagttaatctttgacacaagaaa  5643000  Previous    Next  AGI:  At2g13520.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 7.2e-27 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 5638404    to: 5642468    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g13530.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 5642557    to: 5643612    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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