Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   ----->WOX13(1) -->ANAC58 -->ANAC58                  ---------->DOF2                                                     xxxxx -->ANAC46           ---------->DOF2 --------->GLK1(2)                                   <------ZmHOX2a(1) ->AGL15           <---------YAB1 --------->ARR11(3)            ---------->DOF2    --------->ANAC46   aatctgagttgaagtagcatcatgaaagtctaaagagataatctctccaatctcttgagcaatctctaaagctgtttcttcatacacataaggaagggga  5637800                ---------->DOF2       <---------At4g35610     <---------ZAT6       ----------->RAV1(2)     ----------->HVH21       --------->ATERF1(1)   ------->GAMYB       --------->At4g35610--------->YAB1              <---------ATERF1(1)   <---------MYB52(2)      ------->TEIL   <------ZmHOX2a(2)              --------->ATERF1(1)     --------->MYB46(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->At4g35610    ----------->RAV1(1)--------   --------->ANAC46  ===================================HOX2a_HOX2a     <-------TEIL ----------->GT1   --------->ANAC58 <---------ARR11(3)             --------->ZAT2    --------->At4g35610     --------   --------->ANAC58 --------->ARR11(3)           <------ZmHOX2a(1)   <---------At4g35610   ---------- xxxxxxxxxxxxxxxxx>smallRNA(fl3)          ---------->DOF2       <----------DOF2      <---------MYB46(3)   ataccacgcatctgaaccaaaagatcaatggtagtgacaaagtttaaagcaggagcaggctcccatctttgagatgcaacaaacctgttgttaaaaagcc  5637900                                                          <---------ANAC55(2)                                                          --------->ANAC46                                                          --------->ANAC55(2)              <---------MYB46(3) ->ANAC58                                                <-------TEIL              ------->TEIL ->ANAC58                                      --------->ARR14(2)               --------->AtLEC2 >DOF2   <----------DOF2   <-------TEIL       <------ZmHOX2a(1)  --------->At4g35610       ----------   atggttccctcctttgtactgagaccaagtccatttctgtgtgaaacaggaattgcacatacgtagcatctaaaactcttccatgaacatgagttgttaa  5638000              --------->DAG2                                                                    -----             ---------->DOF2                                                                  -------       ------>ZmHOX2a(2)                                                                     --------     --------->AGP1                                                                        <---------At4g35610     <---------AGP1                                >>>>>>>>>GATA-4                         --------->At4g35610     --------->ARR14(2)                            >>>>>>>>>GATA-1                  <---------MYB46(3)     <---------ARR11(3)                            >>>>>>>>>GATA-3                  <------MYB46(1)     --------->ARR14(3)              --------->GLK1(2)                              <------MYB83-----     <---------ARR14(3)             <---------ARR11(3)                            <---------MYB52(1)     --------->ARR11(3)             <---------GLK1(2)                    --------->ANAC46 --------->ANAC46     <-----------ARR10              --------->ARR11(3)     --------->ARR11(3)    <-------GAMYB------>NtERF2     <---------ARR14(2)       --------->ZAT14      >>>>>>>>>GATA-2   --------->YAB1<---------AtMYB61   ----------->ARR10          <---------ZAT14  --------->LBD16      <---------YAB1<--------P--------- ->GT1<------ZmHOX2a(2) --------->MYB52(1) ------->TEIL    <---------ARR11(3)   <-----------RAV1(1)   accccaagatcttggtaaagcagcaataacagagtagagattttgtacccgtggattgagaggtcttgctattatactcagcctgttggtttcagccacc  5638100                                             ------>MYB46(1)                                             ------>MYB83                                           <---------MYB46(2)                                           <---------MYB111(1)                                           <---------MYB59                                         ------->TEIL                            ------>NtERF2                                       --------->LBD16                           --------->LBD16                                      <---------HSFB2a(2)                       --------->ANAC46                                      --------->HSFB2a(2)                       --------->ANAC58                                     <---------LBD16                            --------->ANAC58         <-------TEIL             ------>ZmHOX2a(2)                            <---------LBD16 ---->YAB1                       <------ZmHOX2a(2)                           --------->ARR14(2) ---->RAV1(1)                   <---------GLK1(2)                      <---------ALFIN1 ->RAP2.6(2)                    --------->ARR14(2)                   <---------ALFIN1 ---->AtMYB61     <---------KAN4(2) ------>ZmHOX2a(1)       ------->TEIL <---------At4g35610 >MYB46(3)     ----------->GT1  <---------ARR14(2)         <---------CCA1(2) <---------ARR14(2)   ataacataagcttcatgtggaataaacagagtcggatcctccggacctaactcaaggttttgtatctcatcccacagcttatccgccatgttactcagag  5638200                                                                                                   --                                                                                                -----                           ---------->DOF2                                           ----------->GT1                       --------->CCA1(2)                                         --------->TOE1(3) <-                      <---------ARR11(3)                              <---------AHL20(2)     --------                      --------->ARR11(3)        ----------->TBP      --------->AHL20(2)     <--------                <------------CBF            ----------->GT1         ----------->TBP---------->DOF2 --  <---------TOE2(3) <---------TOE2(3)  ---------->DOF2    ---------->DOF2        --------->TOE2(3) <-   tatgaaggaagaaaatgaaattgagatataaaagactctaacaaagaagtataaatagaagaaaggaactataaaatgaataacctaaagttaaacatta  5638300                                                                                                  <--    --------->MYB52(1)                                                                          -----    ---------->DOF2                                                         --------->ANAC58   ------ ------->AHL20(1)                                                           --------->ANAC58   <----- ---->YAB1                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->ARR11(3)     ---------- --------AHL20(2)        --------->LBD16                            --------->GLK1(2)   <---------ARR11(3) ->TOE2(3)      ---------->DOF2          <---------CCA1(2)          <---------ARR11(3)  --------->ARR11(3) -ICU4  ----------->GT1 --------->RAP2.6(2)                 --------->TOE2(3)          --------->CCA1(1) ------->AHL20(2)       --------->RAP2.3(2)           --------->TOE2(3)     --------->ANAC46 -------- --------AHL20(1)      --------->RAP2.3(1)    ---------->DOF2      --------->RVE1(1)   --------->RVE1(1)   ataaaataaaggctaaaaaaaagaagccgcaaaaacaaaacccaaatctaaagaaacattaaacttaaaaaatctaacaagacacaaaaatatcccaatc  5638400                                                             <---------ANAC55(2)                                                             --------->TGA1a                                                             --------->bZIP60(2)                                                             --------->ANAC46                                                             --------->ANAC58                                                             --------->ANAC58                                                             --------->O2                                                             <---------O2                                                 --------->ARR14(2)    <---------YAB1                               <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->GLK1(1) -------YAB1                     <-----------HVH21   ------>ZmHOX2a(1)  <---------GLK1(1) ---->YAB1            --------->At5g28300 =============================bZIP_DOF --->MYB46(3)        ----------->GT1      ---------->DOF2    <---------TGA1a                     ---- ----ATHB12        --------->ZAT14     <---------------AGL15 --------->ANAC55(2)  --------->TOE2(2) -->CBF <-----------GT1       <------------CBF  <---------GLK1(1)  <------------CBF      <xxxxxxxxxxx ->WOX13(1)        <---------ZAT14     --------------->AGL15 --------->ANAC55(1)  --------->TOE1(2)   accattctaattacctctctctgcagtaaaaccattgtcatccacaaagggtatcctcttgccacgtaagattgaaatctgaaacctgtgatcacacttg  5638500                                        <---------ICU4                                        --------->YAB1                                       <---------ATHB12                                    ----------------->AGL1                                 <-------PIF5                                 ------->MYC2                                 <-------MYC2                                 <-------MYC4                                 <-------MYC3                                 ------->MYC3                                 ------->PIF5                                <---------HSFB2a(1)                                --------->ANAC58        --------->At4g35610     --------->HSFB2a(1)                  <---------ZAT6        <---------At4g35610     --------->ANAC58                <----------DOF2    <-----------HVH21      <---------ZAT18                <---------ANAC58           ----------->GT1 ------>ID1           <---------At5g28300 <---------YAB1  <---------ANAC58       --------->At4g35610 xxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)    <---------ANAC46 --------->At4g35610   ttgctatgtcagaagcgcctctattacagtgagcacgttccatcatgagaaactaatttggcttgtctttagtgagaagcagaagctcagtaatatgacc  5638600                                                                                  <---------YAB1                                                   <---------MYB46(3)             --------->ICU4                                          <-----------HVH21                     --------->YAB1                                       <---------ICU4                     --------->YAB1         <---------ZAT18               --------->YAB1          ----------->GT1 --------->ICU4       -         --------->ZAT18    ---------->DOF2       --------->ALFIN1    <---------AHL20(2)     <-------TEIL   caaaacattaggccactcacttggtttgtgcaaagcttgaataatgtcataggtggatgaggcgaatgtgaatttatcaaaatgatgatgagacatacag  5638700  Previous    Next  AGI:  At2g13510.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13500.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) Range:  from: 5637083    to: 5638189    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g13520.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 7.2e-27 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 5638404    to: 5642468    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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