Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           -------->P                                                                         --------->MYB52(1)                                                                        ------->GAMYB                                                                        --------->MYB55(1)                                                                       <---------MYB111(1)                                                                       <---------MYB111(2)                                                                       <---------MYB55(2)                                                                       --------->MYB46(3)                                                                       <---------MYB52(2)                                                                    --------->MYB46(3)                                         --------->AHL20(2)       ------>MYB46(1)      --------->AHL20(2)           --------->ANAC58               ------>MYB83 ------>TOE1(2)                    --------->ANAC58               --------->MYB52(1) ------ZAT2               --------->At4g35610                <---------WRKY18(1) ------At4g35610          <---------At4g35610             <---------AtLEC2  --------->LBD16       === ----->ZAT2           <-----------HVH21  --------->AHL20(1) ----------->HVH21                  ------ ----->At4g35610     <------MYB83--------->CCA1(2) <-------TEIL <---------MYB59                <----- --->DOF2            <------MYB46(1)     <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <--   gctgcgaattaaaaaatagaagttggtcagataagataagaaataaaatgaagttcatatgcatgacctaacaactaccgggcttagtattccacttcga  5589800                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   <-----------------AGL1                   ----------------->AGL1                --------->GLK1(1)                                                            xxxxxxxx                <---------GLK1(1)                                                           ---------               --------->HSFC1(2)                                                           ---------             <---------AtMYB61                                                            <---------ANAC58           <---------MYB52(1)                                                         --------->GLK1(1)          --------->LBD16                                                             <---------GLK1(1)         <---------LBD16                                                              --------->At4g35610        <---------LBD16<------ZmHOX2a(2)                                              <---------At4g35610      <---------ARR14(2)                                                           --------->LBD16 =============================HOX2a_HOX2a                                         --------->HSFB2a(2) --->HSFB2a(2)<------MYB83           <----------DOF2         <---------bZIP60(1)  <---------HSFB2a(2) ----HSFB2a(2)<------MYB46(1)  <------NtERF2              --------->ALFIN1       <---------LBD16   -- ----ZmHOX2a(1)<---------HSFC1(2)<---------ZAT18     <---------LBD16     <---------YAB1   <---------ANAC58   ggagagcaagtccgggaggtttccgatcgaggcagggctctttttgactaaaaaccacgggtgatgccaattctcatccttgttcgggagatgcgagcca  5589900             --------->DEAR3(1)            --------->MYB46(3)            --------->DEAR3(2)            --------->ATERF1(1)           <---------ATERF1(1)                                                             --------->ANAC58       --------->ANAC58                                                                    --------->O2       --------->ANAC58                                                   --------->ATHB12 --------->ANAC46       <---------ANAC55(2)                                               --------->ICU4    <---------O2       --------->ANAC55(2)                                               <---------YAB1    <---------ANAC55(2)    ----------->TGA1                                                   --------->YAB1      --------->ANAC58  --------->YAB1         <---------ANAC58                --------->AHL20(2)                <---------TGA1a  <---------ICU4         <---------ANAC46               --------->AHL20(2)<---------ICU4   --------->TGA1a --------->ICU4          <---------ANAC58               <---------AHL20(2)--------->ATHB51 --------->ANAC55(2) <---------YAB1         <-----------------------TaNAC69(2)   --------->AHL20(2)<----------ID1 xxxxxxxxxxxxxx>smallRNA(le3)                     ----------->GT1   ----------->GT1    <-----------HVH21 >ANAC58  --------->ARR14(2)                      --------->YAB1<---------ARR14(2)  <---------O2 >ANAC58  <---------ARR14(2)                  <---------AHL20(2)--------->ARR14(2)  --------->O2 ------->YAB1------->GAMYB                  <----------DOF2 <---------AHL20(2) <---------ETT(1)xxxxxx   gtgatgatgacggaaccgccttggaagtcgtggaagagtttccctgctttaattgtaaataaataatatacggtcataattgcgacaagtgtcacgcgag  5590000                                           <<<<<<<<<<E2Fb                                           <------NtERF2                                          ----------->GT1                                          --------->LBD16                                         <---------ANAC46                              ----------->GT1                              --------->ANAC55(1)                              <---------ANAC55(1)                              --------->ANAC58                --------->GLK1(1)       <---------LBD16          --------->GLK1(2)   <---------ANAC46         --------->ARR14(2)   --------->ANAC46                                          ---------->DOF2         <---------GLK1(2)    --------->ANAC55(2)                                    --------->TOE2(3)         <---------ARR14(2)   <---------ANAC55(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       ----------->ARR10      <---------ANAC58           --------->ATHB12     ------>ZmHOX2a(1)   <--      <------ZmHOX2a(1)       <---------ANAC58<---------GLK1(1)            ---------->ID1         --- xxxxxxxxxxxxxxxx>smallRNA(i2)--------->ANAC58--------->GLK1(1)     --------->GLK1(2)xxxxxxxxxxxxxxxx   taattgaaggagattctgaaatcaactcgattacgtaatttaggcgggaaatcggagagtcatttggcacaatctttgtccttagaacattaaagccttc  5590100                                                     --------->LBD16                                                    --------->ANAC46                                                    --------->ANAC58                                                   <---------LBD16                                                  ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)                   <---------RAP2.3(1)                                                --------->ARR14(2)                   --------->LBD16                                                <---------ARR14(2)                  <---------RAP2.6(2)                                             <---------ANAC46                       <---------RAP2.3(2)                                             --------->ETT(1)                      --------->RAP2.6(3)                                           <-----------HVH21          ------>ZmHOX2a(2)                                        <------MYB83--------->ANAC58  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       <---------AtMYB61             <------ZmHOX2a(2)        <-----------GT1             <-----------RAV1(1)    <---------YAB1          <---------LBD16     ----------->GT1         ----------->GT1<------NtERF2<---------ICU4        --------->ATHB12 -------ZAT14               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    --------->ARR14(2) ------>ZAT14               <---------DEAR3(1)<---------DEAR3(2)    <---------ARR14(2)<------NtERF2 xxxxxxx>smallRNA(se3)  --------->ALFIN1<------MYB46(1)  --------->YAB1       <---------ATHB12   tgaactggagtaacaattcgaaagacttggggggctaattgttggtgtcggatcccgcatcatgagttcggatccagccaaagattgcggcacaagtaga  5590200                        --------->ANAC58                        --------->ANAC58                             <---------REM1(1)              <                       <xxxxxxxxxxxxxxxxsmallRNA(i)             <---------ANAC58                -----                 --------->PCF2                           <------MYB46(1)                      <-----                 <---------PCF2                           <---------MYB46(3) <---------At4g35610=====                 <---------PCF5                           <------MYB83       --------->At4g35610<----                 --------->ZAT18   <XXXXXXXXXXXXXXXXXXXXMIR774B*<---------ANAC58          <------ZmHOX2a(1)                 <---------ZAT18*TSS --------->ALFIN1<---------ARR11(3)      <---------ZAT2    <-----                 --------->PCF5------>ZmHOX2a(1)     --------->ARR11(3)      <------NtERF2<---------ICU4              --------->ALFIN1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->At4g35610   --------->ICU4   agaagctcataagagggagggcccataagcatcctcgaggtgagagtatgggcgagatgttggtttgcgagatgaaggcagcatcgaagtcaggattact  5590300                                                 <---------ZAT14                                                 --------->ZAT18                                  --------->HSFB2a(2)               --------->ALFIN1   <---------HSFB2a(2)          ----------------->AGL1  <-----------RAV1(2)          ----------------->AG   <-------TEIL    <---------ZAT18        <---------ARR14(2)   <---------AtMYB61   --------->ZAT14                                   <-       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <-- ------------CBF         --------->ZAT2   xxxxxxxxxxxxxxxx>smallRNA(i)                            --- ---------->AGL15        <---------ZAT2  <xxxxxxxxxxxxxxxxsmallRNA(i)                             <-- ------------AGL1        <---------At4g35610    --------->ALFIN1                                  --- ===========================MADS_MADS  <---------HSFB2a(1)                 <---------AHL20(2)    ---- -----------AGL15        --------->At4g35610  <---------ANAC46          ----------->GT1         <---- ------------AGL2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <-------TEIL                  -----   caaattggagaaaccgaatggggcgagagctgaggtccagaaggctcggagtggactcggtttaaacgttcaaatagttaattcaaagactaaaaacaga  5590400                                                                                                  ---                                                                                                  <--             <---------YAB1                                                                  <-------             --------->ICU4                                                           --------->ANAC55(2)     <---------TOE2(3)                                                                --------->ANAC58    ---------->DOF2                                                                   --------->ANAC46   <---------AHL20(2)                                                                 --------->ANAC58 --------AHL20(2)                                                                     --------->ANAC55(1) -------ARR11(3)                                                                    <---------ALFIN1 ------>ARR11(3)                   <---------AHL20(2)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -------AHL20(1)             ----------->GT1                                 ---------->DOF2 <------- ------>AHL20(1)             --------->ANAC55(2)                          --------->AtLEC2--------->GLK1(1) ----->CCA1(2)       ----------->GT1         <----------DOF2             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -----ARR11(3)--------->ATHB12    --------->AHL20(2)                  --------->ARR11(3)  <---------CCA1(2) ---->ARR11(3)<--------ATHB1 <---------ANAC55(2) <---------ANAC46    <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   tatatttaaagtagaatgattgtgagtaaataggtattaaatgtattctttgggtataaattgtgggtctaagaccatgtaaagacacacgcatttcttg  5590500                                                              <---------AHL20(2)            ------>ZmHOX2a(1)                                                        <<<<<<<<<GATA-1                --------->KAN4(2)                                                       <-----------GT1                <---------KAN4(1)                                                  --------->ATHB12                    --------->KAN4(1)                                                  <---------ICU4                     <---------KAN4(2) -------->GT1                   --------->YAB1    <--------HAHB4                    --------->YAB1 -------ANAC46         <-----------GT1           --------->ICU4             ---------->ID1<---------ICU4 --ANAC58           <----------DOF2              <---------YAB1      <---------AHL20(1)--------->YAB1 --ANAC58       <---------GLK1(2)              --------->YAB1--------->AHL20(2)------>ZmHOX2a(1)   gtgtaaattagctatacacattcttttacaatactcatagttttttctataatcatttatctattttatagtatatttgtcctcaagaataatccttccc  5590600                                                           <----------DOF2                                                          --------------->AGL15                                          --------->AHL20(2)                              <xxxxxxxxxxxxxxxxsmallRNA(i)<---------------AGL15                             --------->ANAC46            ----------------->AGL3                 <---------ANAC58         <---------AHL20(2)                 <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              --------->TOE2(3)             xxxxxxxxxxxxxxxxxxx>smallRNA(s2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------WOX13(1)        <---------TCP11(2)       --------->AHL20(2)    <---------ETT(1)   <---------YAB1               --------->PCF2       <---------AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------TCP16(1)    --------->AHL20(2)    --------->ARR14(2)  --------->YAB1          <-----------RAV1(1)    <-------    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------ICU4 ----------------->AGL2--------->ZAT18   --------->AHL20(2)     <---------ARR14(2)<---------TOE2(3)  ---------->DOF2--------->TCP16(2)  ---   <---------AHL20(2)   <xxxxxxxxxxxxxxxxsmallRNA(s)    ------>ZmHOX2a(2)    <---------PCF5<---------AHL20(2)   actaaataaataaatacttgagtgtctgaatccgacatccacaattaatgctaattgatccctttaaaagaaatgttggggtccacaacctatattttta  5590700  Previous    Next  AGI:  At2g13410.1    Description:  expressed protein Range:  from: 5586384    to: 5590232    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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