Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->ANAC46                                     <---------ALFIN1                                   =====================================HOX2a_HOX2a                                   <------ZmHOX2a(2)                                   --------->CCA1(2)                                  --------->ARR11(3)                                  <-----------ARR10               ---------->DOF2                                  <---------ARR11(3)             ------>ZmHOX2a(1)                                  --------->ARR14(2)         --------->ARR14(2)                                  --------->AGP1             <---------ARR14(2)             ----------->GT1      <---------ARR14(2)--------->ANAC46        --------->ANAC58         --------->GLK1(1)  --------->ANAC58                               <-        --------->ANAC58         --------->At4g35610--------->ANAC55(1)                      <------ZmHOX2a(1) <---------ANAC46          ---------->DOF2          --------->ANAC58                        ---------   attcagtggaacgaaacgataaacgaattgaaagcagatccacacgattaaaacacgaaatcgaatcctaaagccctctaaatctcgaattgttaggata  5563100              <------MYB46(1)         --------->LBD16                                       <--------              <------MYB83     <---------HSFB2a(1)                                          ---------             <---------TOE2(3) --------->HSFB2a(1)                                      <-----------HVH21  ------->TEIL<---------ANAC55(2)   <---------LBD16                             <---------AHL20(2) --------MYB52(2)              <---------HSFC1(2)                               --------->AHL20(2) -->GT1      --------->MYB59   --------->HSFC1(2)  ---------->DOF2             --------->YAB1      --   aacgaaccctagaattaggtatacgaatagagaagtttcccagagaagaagcacaaaggaagagctatagagaagaagctattaaaacacagtcacataa  5563200                                                                                         --------->GLK1(2)                                                                            <---------ARR11(3)                                                                            <-----------ARR10                                                                            --------->ARR11(3)                                                                           --------->RVE1(1)          <---------LBD16                                              <---------HSFB2a(2)        --- <---------YAB1                                                  --------->ANAC58        <-----------ARR10 -ANAC55(2)             --------->ANAC46           ----------->GT1     --------->HSFB2a(2)       ---- >ANAC55(2)             --------->ANAC58       --------->ATHB12  --------->ANAC46   --------->LBD16 ------->CCA1(2)        --------->ANAC58    <----------DOF2      --------->ANAC58 <---------LBD16----   gagatgataaactctggagaaaattcacgctaagagttttgacaaactttgatttgaaaaatcaaacacgcttctaaaaatctcaccggagaatctaatc  5563300                                                  --------->TOE2(3)                             ---------->DOF2     ----------->GT1                        ----------->GT1          <---------ANAC46 --->ZmHOX2a(1)        ----------->GT1      --------->ANAC55(2)                             --------- ----->TOE1(2)      --------->GLK1(2)       <---------ANAC55(2)                         ---------->DOF2 ----->TOE2(2)     <---------GLK1(2)       <-------TEIL         --------->MYB52(1) ----------->GT1---   cttcgaaatcgaattcaaacagaaactggaaaaaagagtctgaaattcgtaacgtttatttgggattatcggaagttttgtatcggagttaaaagagaga  5563400                                                                                  <------MYB83                                                                                  <------MYB46(1)                                                                                  <---------MYB46(3)                   --------->ARR11(3)                      ---------->DOF2       <---------AtMYB61                   <---------ARR11(3)                   <---------TOE2(3)       <---------MYB52(1)    --------->GLK1(2)                                 ---------->DOF2          <-------GAMYB   <---------ARR14(2)                          <------NtERF2            --------->LBD16             <   --------->ARR14(2)  <---------YAB1         <---------DEAR3(2)      <---------LBD16             <--   <---------GLK1(2) ------>ZmHOX2a(2)       <---------DEAR4(1)      --------->MYB52(1)          ---- -->GT1      <---------YAB1                  <---------DEAR3(1)    <------ZmHOX2a(2)           ------ ------>MYB52(1)<---------WOX13(1)          <---------ORA47(1)    <-----------HVH21            <-----   aaacggattctggtgatgatagatcgtaattgagaagacggagaaggtcggcgaggtaaaggaaagacgatcaccggagagcgttggttttggatgggat  5563500     <------NtERF2   <---------DEAR3(1)  --------->ATERF1(1)  <---------At4g35610  <-------GAMYB  --------->At4g35610  <------NtERF2  <---------ZAT2  --------->ZAT2 <---------ATERF1(1) <---------RAP2.3(1)              --------->GLK1(2) <---------MYB46(3)              <---------ARR11(3)                                                -- <---------DEAR3(2)              --------->ARR11(3)                                                -- ------>NtERF2                 ----------->ARR10                                                ----- ---------DEAR3(1)         <---------LBD16                                                  --------- ---------HVH21           <---------LBD16                            ---------->DOF2      --------->SPL7 -->ZmHOX2a(2)            <---------ANAC46                      ----------->GT1           <---------TOE1(2) --->ARR14(2)            <---------LBD16                --------->DAG2                  <---------SPL7 ----ARR14(2)         --------->ARR11(3)      *TSS     ---------->DOF2       <------------CBF  ------   cgtcggctgcgagagaaggcgagaggtctcggggagattttgaagtgagagaaaaaaaaaagcgtttggagaaaagagagattgggttatcggacgatta  5563600         <---------MYB46(3)        <---------WOX13(1)                                                                <------MYB46(1)        <--------P                                                                        <------MYB83      <------MYB46(1)                                                         <---------AHL20(2)      <------MYB83                                                        <---------AHL20(2)       <- ------->YAB1                           <---------------AGL15   <---------At4g35610     <--------P <- ------->AHL20(2)         <---------AtMYB61  --------->YAB1  <---------ZAT2   --------->AHL20(2)  <-- ---->YAB1       --------->GLK1(2) <<<<<<<<<MYB2             --------->At4g35610    <---------TOE1(3) -->GT1<-------GAMYB<---------TOE2(3)   --------------->AGL15<---------At4g35610    <---------TOE2(3) --->AHL20(2)   <------------CBF<---------AtMYB61   --------->ICU4       <---------AHL20(2)       ---   ataatatttggttgatgagattgtggttttggttttggttttctctataatggaattatggactgctgcttattttttatttttttaagggtaggcatga  5563700                                                                             <---------AHL20(2)                                                                             --------->AHL20(2)                                                                             <---------ICU4                                                                             --------->ATHB12                                                                             --------->ATHB51                                                                            --------->ICU4                                                                            <---------YAB1                                                                          --------->YAB1                                                                         <---------YAB1<----------ID1           <---------ZAT6                        ----------->GT1         <---------AHL20(2)          <---------TOE1(3)                     ----------->GT1          --------->AHL20(2)      <--- --------CCA1(1) ----------->GT1              ---------->DOF2           <---------AHL20(1)       <--- --------RVE1(1) <---------ZAT6       --------->ANAC46                  --------->AHL20(1)      ----- -------ARR11(3)<---------TOE1(3)   --------->HSFB2a(2)                 --------->AHL20(2)      <---- ------>ARR11(3)<---------TOE2(3)   <---------HSFB2a(2)           --------->YAB1   ---------->DOF2   gatattttacttagggttagggttaaacttttgaatttccagaccacaaaaagataaaactatatgaattagaatataattatttgaaagaaacaaatta  5563800                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     ----------->GT1                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ANAC58          --------->AHL20(1)       --------->ANAC46                 <------ZmHOX2a(1)  <---------AtLEC2          <---------AHL20(1)   --------->AHL20(2)          --------->AHL20(1)  <---------ANAC58         --------->AHL20(2) --------->YAB1  <------ZmHOX2a(1)  <-----------GT1  <---------ANAC46   ------->GAMYB <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->AHL20(2) ---MYB83          ------>MYB46(1)--------->YAB1 --------->YAB1 xxxxxxxxxxxxxxxx>smallRNA(i)<-------- ---MYB46(1)       ------>MYB83  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------ARR11(3) ---->MYB59        --------->At4g35610 --------->ANAC46  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      - -----TOE2(3)     --------->MYB52(1)<xxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------AHL20(1)     <   ggttgcatggtgacatataccaactgaaaatatatatgatcacaccaaaaattataaacaactaggaattgatcagcgatatattacaggataatatgtt  5563900                                       --------->AHL20(2)                                      <---------AHL20(1)                                      --------->AHL20(1)                   <---------AHL20(2)                                --------->ANAC55(2)                       <---------YAB1                                ----------->GT1                      <---------RVE1(1)                                <---------ANAC55(2)                  <---------CCA1(1)                             --------->ICU4                         <---------ARR11(3)                           --------->YAB1                           --------->ARR11(3)                           <---------ICU4                        <---------TOE2(3)                          <---------YAB1                  ----------->GT1<---------AHL20(2) -AHL20(1)                <---------AHL20(2)       ----------->GT1 --------->YAB1              <----- -------------->AGL15  <---------AHL20(2)    ---------->DOF2    --------->YAB1               -------- ---------------AGL15 --------->AHL20(2)   <---------AHL20(2)  --------->ICU4  <---------AHL20(2)   ttctaaaattagtggattttaaaattttataattatgtaatatatataaaagtttgtaaattgtattaatgatatttttattttatagtttacaaggatc  5564000  Previous    Next  AGI:  At2g13370.1    Description:  CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase. similar to PKL (PICKLE) [Arabidopsis thaliana] (TAIR:AT2G25170.1); similar to hypothetical protein OsJ_024447 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40964.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16828.1); similar to hypothetical protein OsI_026247 [Oryza sativa (indica cultivar-group)] (GB:EAZ05015.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain Chromo domain-like; (InterPro:IPR016197); contain Range:  from: 5551263    to: 5563546    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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