Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 ------>ZmHOX2a(2)                                                             --------->ARR14(2)          <---------ICU4                              --------->ICU4          --------->ATHB51                            <---------YAB1          <--------HAHB4                            <---------------AGL15         --------->ICU4                            ----------------->AGL3       =============================================================MADS_MADS       --------------->AGL15                      --------->STY1(2)       <---------------AGL15                     ------>MYB46(1)       --------->TOE2(3)                    ------->GAMYB    --------->ARR11(3)   --------->KAN4(2)                       --------->MYB46(3)<---------ARR11(3) <---------ARR14(2)                        <---------MYB111(2)<------ZmHOX2a(2) <---------MYB52(1)                 xxxxxxxxxxxxxxxx>smallRNA(i)  <---------MYB52(2) --------->ARR14(2)              <---------MYB46(3)<-----------------AGL3 ---------MYB52(1)           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ATHB12 ---->MYB52(1)              <---------TOE2(3)    ------>MYB83--------->AGP1 ----ALFIN1             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AGP1            <---------ARR14(2) -->MYB46(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<--------HAHB4 --------->MYB46(3) -->DEAR3(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->YAB1-------->P        --------->ARR14(2)   ccggttattccataattagagtttgagtttaagaatggttcgataacaacctagctattattagatctactaaccaatagtttcaagagaataccctaag  5499300                                                 <----------DOF2                                            <---------ANAC58       <---------YAB1              <---------ANAC58              <---------ANAC58      <-----------GT1              <---------ANAC58   --------->ARR14(2)           <---------AHL20(2)           <----------DOF2       --------->GLK1(2)        <----------DOF2              <---------MYB59        <-----------GT1          <---------ARR14(2)   ---------->ID1         --------->YAB1        --   cctgatgtttttactttcttgtcttacaacctcacaatctgctattgcttccttttgtttctttttattttcattactatcttacttagcctaattcaaa  5499400                         xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <----------DOF2                    --------->LBD16           <---------ANAC46           <---------ANAC58           <---------ANAC58<---------ANAC46 ------->TOE2(3) ------>ZmHOX2a(2)        <---------MYB52(1)------>ZmHOX2a(2)   accttggtctattgtgtgatcccagagctttgtggaattcgacccttaagtgctacaatcgatctcttatttgagagagtggtcttaaggcaatttgacc  5499500                      <------NtERF2                     --------->LBD16                     ------>NtERF2                    <---------LBD16                    <---------ANAC46                   <---------LBD16                   <---------ANAC46                                                      <-----------GT1               <-------GAMYB                                                        <---------AHL20(2)              <---------DEAR3(1)                                                <---------AHL20(2)              <---------MYB46(3)                                               <---------YAB1             <------NtERF2                         <------ZmHOX2a(1)          <---------AHL20(2)           <---------ANAC46                       <---------YAB1          <---------AHL20(2)           <---------ANAC58             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------YAB1           <---------ANAC58          <-----------GT1                      --------->AHL20(2)      <--   tatatcaaatttggcgtcgttgccggggttctctacgattcaccattagattaggattagaattttttctaagtatttatttttattttttttacttagt  5499600                             --------->ALFIN1                                                <-------                  <---------ANAC58                       ------>MYB46(1)                    <------ZmHOX2a(2)                  <---------ANAC46                       --------->MYB52(1)                --------->ARR11(3)                  <---------ANAC58       --------->YAB1<---------MYB59                <---------ANAC46              <---------ANAC58          <---------YAB1 --------->AtMYB61              <---------ANAC58         <----------DOF2   <---------At4g35610         --------->MYB46(3)             <---------ANAC58    <----------DOF2      <-----------RAV1(2)        <------ZmHOX2a(1)             <------------CBF --------DOF2 <---------ANAC58          <---------ATHB12 ------>MYB83           <---------YAB1   ctttctcttttctttttcttgtgtgtttcaggtgtttgtctaatcatagaaccaggaccaaacgagaaacatgaacgagagtaagattgctgggatcatg  5499700                   --------->ANAC58                                                   ------>MYB83                   --------->ANAC58                                                   ------>MYB46(1)                ------------>CBF                                              --------->YAB1              <---------ETT(2)                                               <---------YAB1      ---------->DOF2                                                      --------->CCA1(2)   --------->TOE1(3)                                --------->At4g35610   <---------ARR11(3)   --------->TOE2(3)<---------ATHB12            --------->MYB52(2)        --------->ARR11(3)  <------ --ICU4       <---------ZAT18      *TSS     <---------YAB1       --------->LBD16      -------->P   gctaaacttaacgcggtccacaatcaatttgtggatgatgtcgattatgttagtagcagaggttttccgaatcagagatatgatcaccaacaaggctaca  5499800                                                    -------->P                                                  --------->MYB46(3)                                                  <---------MYB55(2)                                                 <---------At4g35610                            <----                                    <---------GLK1(1)          ---------->DOF2                  -----                                    --------->GLK1(1)--------->MYB46(3)                        ------                            <---------ALFIN1    --------->ANAC58                              <------             <---------HSFB2a(1)    --------->ARR14(2)------->GAMYB                   --------->ANAC58     ------>ZmHOX2a(1)     --------->ZAT14      --------->ANAC46                      --------->ANAC46 --------->ARR14(2)     --------->STY1(2)       --------->ANAC58                      --------->ANAC58 <---------ARR14(2)     <---------STY1(2)      <---------HSFB2a(2)            <---------At4g35610 ---ZAT14    --------->HSFB2a(1)--------->YAB1 --------->HSFB2a(2)            --------->At4g35610 ---   gaggttcctatgggaatggtccaactagctacactcagaattctcagttccagcaaccgcttcagaatagcaatagtttcagcttcacaaggaactatga  5499900                                                                                      <---------ARR14(2)                                                                                      --------->ARR14(2)                                                                                      <---------ARR14(3)                                                                                 ------->GAMYB                                                                               <---------At4g35610                                                                               --------->At4g35610                                                                              ----------->RAV1(1)                           --------->MYB46(3)                        <---------HSFC1(1)<------ZmHOX2a(2)                       --------->MYB46(3)                            --------->HSFB2a(2)                     --------->ANAC46                                <---------HSFB2a(2)------>ZmHOX2a(2)            --------->ANAC46                             --------->HSFB2a(2) <---------WRKY38(1)            ------>MYB46(1)<---------MYB55(2)            <---------HSFB2a(2) <---------WRKY12            ------>MYB83<---------ALFIN1           <---------ICU4 --------->GLK1(2)   --------->ARR14(3)  <---------ANAC58 <---------ALFIN1                -------->ATHB1--------->ARR14(2)   <-----------ARR10  <---------ANAC58<---------ALFIN1    --------->ANAC58  <---------ANAC58    --------->WRKY18(1) -----ARR11(3)   <---------ALFIN1     --------->ANAC46  <---------ANAC46  <------MYB46(1)          -- ---->ARR11(3)  <---------ATERF1(1)   --------->ANAC58  <---------ANAC58  <------MYB83--------->GLK1(2) --->YAB1   --------->ANAC58  <---------ALFIN1     --------->ATHB12 <---------LBD16   --------->ARR11(3) ---YAB1    --------->ANAC58<---------ALFIN1      <---------YAB1 <---------ARR14(2)   <---------ARR11(3) --->ZmHOX2a(2)--------->DEAR3(1)   ---------->DOF2--------->YAB1<---------GLK1(2)   <------ZmHOX2a(1)   tcttgcttcttaccaagcccccccctccacccacacctaaaagcaagatagaatcattgctggaacagattctggaaggtcaacagaggatcttagagag  5500000                                                <----------DOF2                                              <---------At4g35610                         -----------                                     ------>ZmHOX2a(1)                                    -----------                                     --------->LBD16                                 <------ZmHOX2a(1) ------>MYB83                      ----------->RAV1(2)  ---------->DOF2      --------->ICU4 ------>MYB46(1)    --------->At4g35610       --------->At4g35610            <---------YAB1 ------->AtMYB61    <---------At4g35610    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------TOE2(3)   acctatccctagatggaatgagagcagcctcactacttcctggcattctgcttcaatggaaagtgagtatgagttagtgaagattgaggagagtgacgat  5500100                               -------->P                               ------>MYB46(1)                               ------>MYB83                             <---------MYB46(2)                             --------->DEAR3(1)                             <---------MYB111(1)                             <---------MYB55(2)                             --------->MYB46(3)                             <---------MYB111(2)                             --------->AtMYB61              --------->ARR14(2)                           ------>NtERF2            --------->AtMYB61                      <---------ARR14(2)                       --------->ANAC46           ------>NtERF2          <-----------RAV1(2)---------                       --------->ANAC58          --------->ANAC46--------->ANAC46          <---------GLK1(2)                       --------->ANAC58       <---------ETT(2) <-----------GT1             --------->ARR14(2)                      --------->SPL7      --------->ETT(2)  <---------ARR14(2)  ----------->TGA1    - >HVH21             <---------SPL7       <------NtERF2     <---------CCA1(2)    ----------->HVH21   - >TGA1          <---------ZAT6--------->MYB55(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->At4g35610   tttgtagttgcagaggtagtgtcgaacgacaccaacccttggtgtcgatcgacaccatcgcatatatacgagacatcaggctgtgacgaagcagaatcga  5500200  Previous    Next  AGI:  At2g13270.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1) Range:  from: 5499735    to: 5500937    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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