Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------YAB1                                                                                 <---------ARR11(3)                                                                                --------->YAB1                                                                               <---------YAB1                                                                               --------->ICU4                                                                             --------->YAB1                                <-----------ARR10                            <---------ICU4                           ------>MYB83--------->TOE1(3)                    <---------YAB1                 <---------ARR11(3)    --------->TOE2(3)                   --------->ARR11(3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     --------->YAB1              ------>MYB46(1) ------>ZmHOX2a(1)   <---------ARR11(3)     <---------YAB1              ----------->RAV1(1)     --------->ZAT6      <------ZmHOX2a(1)<---------ARR11(3)              ------>MYB83 ------>MYB46(1)    ---------->DOF2            --------->ICU4           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->ARR11(3)   --------->YAB1   --------->ANAC46     --------->MYB46(3)  --------->MYB46(3)        <---------ATHB12   ---------->DOF2   cctaaactccataacccaacatctaaaccatcctaatctaaccctaaccaaagaactctaggagactactcactcatgatcatgatcatacaaaagaatt  5491100                        <---------YAB1                       --------->TOE2(3)                      <--------HAHB4                      --------->ATHB12                      --------->YAB1                   --------->YAB1                   <---------ICU4                  --------->ICU4                         --------------->AGL15             --------->ANAC58                            ============================================             --------->ANAC58                            <---------------AGL15           ---------->DOF2                              --------->ANAC55(2)      <----------DOF2--------->ICU4                     <---------ANAC55(2)     ------>ZmHOX2a(2)<---------ICU4           ---------->DOF2                          --------->AtLEC2   <---------ARR11(3)<---------ATHB12        <---------AHL20(2)                       --------->YAB1<   --------->ARR11(3)<---------YAB1         --------->AHL20(2)                       <-------TEIL   <   ggtttgatctttgtaaagccataatcattagagaatagatgagaaatttaaaagaaatacttgatatagaaacttaagaactcaacattcatacaaaaac  5491200                                                                                                  ---           --------->TOE2(3)                                                                    <----           --------->TOE1(3)                                                         --------->YAB1 -           --------------->AGL15                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------------AGL15                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         ------->TEIL                        <----------DOF2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    ---------->DOF2         --------->ARR11(3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ==========================MADS_MADS    ---------->DOF2        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) < ---------TOE2(3)           <---------ARR11(3)            --------->ZAT6       --------->YAB1 <------ ---------YAB1---------->DOF2 ------>ZmHOX2a(2)  <----------DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<   ttaagataaagaaccttaaagagaagttttgatctccaaaacaaaagctttctttctctaaaactaggttaagagtatttatagtaatgagaaaataaac  5491300        --------->LBD16       --------->ANAC46                                                                    --------->YAB1       --------->ANAC58                              <---------ATHB12                   ----------->RAV1(1)       --------->ANAC55(1)                          --------->ANAC58                  --------->LBD16       --------->ANAC58                 --------->ANAC58     <------ZmHOX2a(2)       --------->ANAC58      <---------LBD16                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->ANAC58    -------->P              --------------->AGL15   ------>MYB83                     --------->ANAC46 <------ZmHOX2a(2)         <-----------------AG     --------->ANAC58                --------->SPL7 ------>LBD16 --------->MYB52(1)     ===============================HOX2a_HOX2a     <---------LBD16 -----LBD16 <---------MYB52(2)       <------ZmHOX2a(1)      <---------ARR11(3)     <xxxxxxxxxxxxxxxxx -------->ARR14(2)         ----------------->AGL2   ------>MYB46(1)       <-------TEIL<------NtERF2 ---------ARR14(2)       <-----------GT1--------->ANAC58    --------->ARR11(3)    <---------SPL7    - -----GT1   --------->MYB46(3)     <---------TOE2(3)--------->ANAC46 <--------P--------->ARR11(3)   - -----------ARR10       ----------->HVH21         <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ARR11(3)   -   cggatcaacccggaacaaaccgagttttgacccgatttaggaaggcaatcgaccaagcaatagatcacttggtagattcaatatcgtccgcaacaatact  5491400              --------->ANAC58              --------->ANAC55(1)              --------->ANAC46              --------->ANAC58            <---------ALFIN1       <---------ATHB12      ------>MYB83                                                                       <----------DOF2      ------>MYB46(1)                                                        ------------>CBF    xxxxxxxxxxxxxxxx>smallRNA(s)                                            --------->ANAC55(1)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                      --------->ANAC58        - <---------WRKY18(1)                                                        --------->ANAC46       <- xxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    xxxxx -------->WRKY38(1)                  <-------TEIL     *TSS    ------>ZmHOX2a(1)       <---------ALFIN1 -------->WRKY12                <--------P           <---------AGP1         --------->ANAC58  <------ ---------->HVH21          --------->TOE2(3)  ------>ZmHOX2a(1)           <---------ALFIN1   <xxxxxxx   ccttgaccaatcgaccacgcaatcgacaaccttggtagattcaaattcctccatagctctggtcctgactaatcgaccacgcaatcgaccactttggtag  5491500                                      <---------ANAC55(2)                                      --------->ANAC46                                      --------->ANAC58                                      --------->ANAC55(1)                                      --------->ANAC55(2)                                      --------->ANAC58                                     <---------LBD16                        ----------->HVH21                        ------>ZmHOX2a(1)                <xxxxxxxxxxxxxxxxsmallRNA(i)            <xxxxxxxxxxxxxxxxsmallRNA(i)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        ------>ZmHOX2a(1)      <---------ATHB12     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------->YAB1 <---------AGP1 ------>MYB46(1)                                   <----------DOF2 ------TEIL--------->LBD16 ------------>CBF                                     --------------------- xxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->MYB46(3)                         ------>ZmHOX2a(1) --P<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <---------ALFIN1       <---------GLK1(2)          <-- xxxxxxxxxxxxxxxxsmallRNA(si3)------>MYB83 --------->DEAR3(2)    ------>ZmHOX2a(1)       <----------DOF2   attcatattcctccgtagctctggtcctgaccaatcgaccacggaatcgaccacttggtctattgtcctgctagcttctcctctttggtcactttgcatt  5491600                                 <-----------GT1                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------ALFIN1               --------->At4g35610                   --------->ZAT14              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<-----------GT1        --------------------->WRI1     --------->HSFB2a(2)        <----------DOF2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------MYB59      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   --------->TOE1(3)   --------->TOE1(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->TOE2(3)   --------->TOE2(2)   <---------At4g35610xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ATHB12    ------>MYB46(1) >WRI1xxxxxxxxxxxxxxxx>smallRNA(i)     <---------HSFB2a(2)     ------->TEIL  ------>MYB83 --------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ANAC46      >>>>>>>>>MYB2   cttttagctcctttgtttgctccatttgctccattttacttccaaaactttaaactccactcatgtacctaagaaaaccaaatgcaaatgcaaatgcaat  5491700                         ----------->RAV1(1)                             <---------ARR11(3)                        <----------ID1                                   --------->ARR11(3)                      --------->ANAC58                       ------->GAMYB                      --------->ANAC58                      --------->MYB46(3)        <---------ALFIN1                    ---------->DOF2            ----------->GT1     --------->ZAT6    --------->LBD16-                ------->TEIL               --------->DAG2  --------->ANAC58          --------->ANAC46             <---------YAB1               ---------->DOF2  --------->ANAC58      ------->GAMYB<------     ----------------->AGL1        --------->MYB52(1)    --------->MYB46(3)    --------->At4g35610  <   actatatgccaaaatatgaatgcaaagcaacaaaaactaagagaaaaaggggttttaaaacaaccaaaaacactagatatcaactcccccaaacttatct  5491800               --------->ANAC58               --------->ANAC58                                  ----------->RAV1(1)           --------->ANAC58                                     <----------ID1           --------->ANAC46                                --------->YAB1        ------>ZmHOX2a(1)                                 <-------TEIL <---------ANAC58                                       --------->ARR14(2) <---------ANAC58        --------->CCA1(2)              <---------ARR14(2) -------->STY1(2)    --------->MYB52(1)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                ------- ---CCA1(2)--------->ANAC58--------->CCA1(2)         <------NtERF2                  <------ZmHOX2a(1) ---------STY1(2)<---------ARR11(3) ---------->DOF2--------->ALFIN1             --------->TOE1(2)   -   cttgctagtcctcaagcaagaactaagagataagaagagaaagaggtttgaaggtggggattcatagccacaaaatatcaaacgaaggattcaactcaaa  5491900                                   --------->YAB1                                <---------ICU4                                --------->YAB1                     <---------ANAC58       --------->ARR11(3)      <---------ATHB12       <---------ARR11(3)    --------->WOX13(1)   ---------->DOF2   <---------ANAC46                                               --------->AHL20(2) ------>ZmHOX2a(1)   <---------AtLEC2          <-----------GT1                     <---------AHL20(2) --->DOF2       --------->ARR14(2)<---------YAB1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -------->TOE2(3)    <---------ANAC58     <----------DOF2             --------->ZAT18   gtccttaaagatagttcaaatttgcttgaatcaatcatcatactcttttgtacttctccatactcttcttagtgcatagctctattttaaatctccaact  5492000  Previous    Next  AGI:  At2g13250.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 4.1e-91 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 5488651    to: 5491454    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version