Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->ZAT6                                       <-----------GT1                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                   <---------ICU4                                   <--------HAHB4                            ----------->GT1         --------------->AGL15     --------->ATHB51      <-----------GT1     <---------ANAC58 <--------HAHB4           <---------ANAC58               <---------MYB46(3) --------->ATHB12         <---------ANAC46  <---------STY1(1) <---------ICU4 ----------->GT1    --------->YAB1      <---------ANAC58                           --- ---------YAB1  <---------ZAT6    --------->AHL20(2)   <---------ANAC58            <---------ANAC46 ------>YAB1   <---------TOE1(3)  --------->ICU4     <---------YAB1                <---------ANAC58 ----->MYB46(3)<XXXXXXXXXXXXXXXXXXXXMIR169G*--------->STY1(1)                      <---------ANAC58   ccatcatttgacttcttagggttaatttgctggtgaataattaaccctaggccttatgcttgttgagactccaattggacaagagtcgtgcataatgctc  5470300                                             <---------ARR14(2)                                           --------->LBD16                                      --------->At4g35610                                      <---------At4g35610                                     --------->ALFIN1                                    <---------ZAT18                                   <---------ANAC58                                   <---------ANAC58                                   <---------ANAC46                                 <---------ANAC58           <---------AtLEC2                                 <------MYB46(1)      <------MYB46(1)                                 <---------ANAC58     <------MYB83         --------->GLK1(1)  <------           <---------YAB1        <------MYB83--------->ARR14(2)    --------->LBD16      --------->ARR11(3)     <---------WOX13(1)         --------->MYB46(2)   <---------AtMYB61<---------At4g35610     -------   --------->ATHB12             <---------AtMYB61<------MYB46(1)   <------NtERF2    <<<<<<<<<WRKY18   <---------AHL20(2) --------->DEAR3(2) <-----------------AG     --------->ANAC46 --------->WRKY18(1)  <---------AHL20(2) ------->TEIL<---------ANAC46<------MYB83 <---------GLK1(1)  --------->ANAC58----  --------->AHL20(2) --------->MYB52(1)  <-----------------AGL1  <---------LBD16 --------->ANAC58---- --->ZmHOX2a(1)<-------TEIL     --------->MYB111(2)  --------->MYB59 <-----------HVH21  <---------ARR11(3)   cttattaattggtatgatacatgtaccggctagtttggtgtgctcccgatttggtttggtttggatgtccgcatcagatagccaagtcaaggtctcatct  5470400                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                             <------NtERF2                                                                            <---------ATERF1(1)                                                                            ------>NtERF2                              <-----------GT1                              ----------->HVH21                 <---------ARR11(1)                                        --------->DEAR3(1)                 --------->ARR11(3)                                       --------->ATERF1(1)                 <-----------ARR10                                        --------->DEAR3(2)                 --------->ARR14(2)                                      --------->At4g35610                 <---------ARR14(2)                                      <---------At4g35610     <---------ANAC46  --------->TOE2(3)                                --------->ARR14(2)   <----------DOF2    --------->REM1(1)       --------->TOE1(3)         <---------ARR14(2) ---At4g35610    <---------ARR11(3)           --------->TOE2(3)      <---------ANAC58 -->At4g35610   <---------ARR14(1)            --------->YAB1         <---------ANAC55(2) --->TEIL       <---------CCA1(2)          <-----------GT1           <---------ANAC46              <- ---->P         --------->GLK1(1)          <<<<<<<<<GT-1             <---------ANAC58        <------NtERF2   acctgctttgtggatagcatatctacatcaattcacattttctattaaccataagtcgggcaatttgaatcgcgtagccgacgcattgagtaggcgtcat  5470500                                                    <----------DOF2                                                 <---------ARR14(2)                                                 <---------ARR11(1)                                                 --------->ARR11(3)                                                 <---------ARR11(3)                                                 --------->ARR14(2)                                                <---------ARR14(1)                                                <---------CCA1(2)                                             <---------HSFB2a(2)                  <-------MYC3               <---------LBD16                  ------->MYC3           <----------DOF2                  <-------MYC2       <---------ANAC46                  ------->MYC2       <---------ANAC58        <---------MYB52(2)                 <----           ---------->DOF2           <---------ANAC58   <---------YAB1             <----------DOF2      >>>>>>>>>WRKY6            --------->ARR14(2) ------>ZmHOX2a(2)              --------->ATHB12    --------->WRKY38(1)    <---------TOE1(1) --------->HSFB2a(2)                 <---------ATHB12 ---------DOF2  ------->TEIL    <---------ARR14(2)<------ZmHOX2a(2)          ------------>CBF  ------   tctttgttgactataatgcacgttgttgttcgaggttttgcgtctttctcggatctttatgaaacaaacacatttttagtccaatctttggcgaagttaa  5470600                                                             <---------ARR14(2)                                                    <---------ANAC58                                                    <---------ANAC58                                                 <------MYB46(1)--------->ANAC58     <---------ANAC58                            <------MYB83--------->ARR14(2)     <---------ANAC58     <---------ANAC46       <---------MYB46(3) <---------HSFC1(2)      <---------LBD16        <---------AtMYB61                                   - --------->HSFC1(2)   <---------ANAC58         <--------P   *TSS--------->ANAC58                  <-- -----TOE2(3)         <---------ANAC58<----------DOF2 ----------->HVH21                          <--- ---->DOF2  <---------ETT(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ------>NtERF2                <---   agatggttcttgttccgacattttgctcgcggatgggtttctttaacttgttggtcgtgaccggactcgccaacttgtttttgcttcatatttttggtct  5470700                                               <-------GAMYB                                               <---------At4g35610                                               <---------ZAT2                                               --------->At4g35610                                               --------->ZAT2                                              --------->MYB52(2)                                           <-----------HVH21                                           ------------>AtMYB77                                          ----------->HVH21                                          --------->ALFIN1                                        <---------ANAC46                                        <---------ANAC58                                        <---------ANAC58                    <---------MYB52(1)           --------->ICU4            >>>>>>>GRF7                           <---------RAP2.6(3) -------->ANAC46                    <-----------RAV1(2)                   <---------ANAC58 -------ALFIN1                    <-----------HVH21   ---------->DOF2     <---------ANAC58 ------ZAT14                   <-------GAMYB  <---------MYB46(3)          <---------ANAC46 ------REM1(2)              <---------ANAC46 <-----------RAV1(2) <----------DOF2 <-----------GT1   acacttcaacgtgatgttgagagatttgtggagcgttgtcaggcgtgtcagttggcaaaaggaacagcttttaatgccgttttatacctctcgagactgg  5470800             ----------->RAV1(1)            ----------->HVH21            --------->ANAC46            --------->ANAC58            --------->bZIP60(2)            --------->ANAC58         ------->GAMYB         --------->TOE2(2)         --------->TOE1(2)        --------->MYB46(3)        <---------MYB55(2)        --------->DEAR3(2)       --------->ANAC58       ------>MYB83       >>>>>>>>>MYB98       -------->P       ------>MYB46(1)       --------->ANAC46       --------->ANAC58                                                                     ---------      ------>MYB46(1)                                                                       ------>ZmHOX2a(2)      ------>MYB83                                                                        --------->ARR14(2)    --------->MYB46(3)               <----------DOF2          ----------->GT1             <---------ARR14(2)    <---------MYB55(2)            <-----------GT1       --------->ZAT14         <-----------------AGL2   --------->ANAC46           --------->ARR11(3) ------>ZmHOX2a(1)              <---------ANAC58   --------->ANAC58           <---------ARR11(3)--------->TOE1(3)               <---------ANAC58<----   --------->ANAC58    <---------ANAC46         --------->TOE2(3)  --------->MYB46(3)<---------ANAC46   ttctcacccaacccacgacatattggagtatagattttactttgggacttccttaaactgaactaggtaacaactctatatttcttgttgtggatcgttt  5470900                    <---------ANAC58         <-------TEIL                    <---------ANAC58        <---------ANAC46                    <---------ANAC46      <---------ANAC46   --------->At4g35610                   <-----------RAV1(1)   <---------At4g35610  ---------->DOF2  --------->ALFIN1                                 <---------ARR11(3) -->GT1        <---------ANAC58        <-----------RAV1(1)                    <---------At5g28300 -----CCA1(2)  <---------ANAC58  ----------->RAV1(1)                         <-----------GT1     <---   atctaagatgactcattttgtgccttgaaagaagacaacatatgtggtgcatatagctcaactgttttttccaagagatttaccgatttcatggtcttcc  5471000                          <---------HSFC1(2)                          --------->HSFC1(2)                         --------->ANAC58                         --------->ANAC58                     --------->CCA1(2)                <---------LBD16                ------>ZmHOX2a(2)               <------ZmHOX2a(2)              --------->ARR14(2)                                          <---------------AGL15   ---         <---------ARR14(2)            --------->ICU4           --------->TOE1(2)                ----         --------->ARR14(2)  --------->At4g35610   <----------DOF2        ------>ZmHOX2a(1)      ----      --------->YAB1--------->ARR14(2) <---------YAB1           --------->TOE2(2)                ---- ------ALFIN1 <---------ARR14(2)  --------->bZIP60(1)        --------->AHL20(2)                 <----   cacatctatcgtatcggatcgggatacaagcttctgaagtcatttttggcattctttttggaattacatacgagtccttatatgagtatgacatatcatc  5471100                                                           <-------GAMYB                                                          --------->MYB52(2)          <---------ZAT2                                                          <---------MYB46(3)          --------->ZAT2     <---------ICU4                                       --------->MYB111(2)         <---------At4g35610     --------->YAB1                                       <-----------RAV1(1)         --------->At4g35610    --------->ICU4                          <---------ARR11(3)                       --------->GLK1(2) ------>LBD16              <---------ARR14(2)             --------->MYB55(2)  <---------ANAC58 ----->ANAC46              --------->ARR14(2)   --------->MYB52(1)            <---------ANAC58 ----->ANAC58         <-----------GT1       --------->ARR11(3)               <---------ZAT2<---------ANAC58 ----->ANAC58    ---------->DOF2      ----------->GT1 <---------MYB46(3)     --------->ZAT2<---------ANAC46 -----LBD16--------->MYB46(3)     <----------DOF2    <---------TOE2(2) --------->TOE1(2)   <---------ANAC58   cgcaaaataatgaacaaaccaaagttacaaatcgggcttttggtaatatctaacgctggtttgttggagataacattcgagcttgggaagctggcttgta  5471200  Previous    Next  AGI:  At2g13180.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 5.1e-23 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 5470660    to: 5471719    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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