Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->ANAC58                               --------->ANAC58                             --------->MYB52(1)                             <---------ALFIN1                            ----------->HVH21                           <-----------HVH21                                               <xxxxxxxxx                         ------>NtERF2                                                   <---------MYB52(1)                        --------->ANAC46                                                --------->LBD16                        --------->ANAC58                                               <---------HSFB2a(2)                        <---------ALFIN1                                               --------->HSFB2a(2)                      <---------ALFIN1                                                <---------LBD16                      <---------ATERF1(1)                                           <---------ARR14(2)                     <---------WRKY45                                               --------->ARR14(2)                     <---------WRKY38(1)                                           <---------GLK1(1)                     <---------WRKY12                                              --------->GLK1(1)                    --------->PCF5                                              --------->LBD16                 --------->ALFIN1                                              --------->LBD16        ---------->DOF2 --------->ANAC58                                      --------->HSFB2a(2)      <xxxxxxxxxxxxxxxxsmallRNA(i)          ---------->DOF2                   <---------HSFB2a(2)   -  --------->ALFIN1<---------MYB46(3) --------->ANAC58                       ------>ZmHOX2a(1)      -- -------->ALFIN1 <---------AtMYB61   --------->ANAC58                   --------->ARR14(2)----------- --NtERF2     <---------DEAR3(1)   <-----------RAV1(2)       <---------GLK1(1)<---------LBD16  ------   cggtgtgggagaaagcacggtggtccacgcctcacggccaggcacttgaagcacatcatttagagctctgaaactatcctcccggagttccggtaacaca  5463200                    <-------GAMYB                   --------->MYB55(2)                  <--------P                                                        <---------ANAC46                 <-------GAMYB                                                 ------>ZmHOX2a(2)                <---------MYB46(3)                                           <---------ARR11(3)          <---------ANAC58                                                   --------->ARR14(2)          --------->MYB52(2)                                                 --------->ARR11(3)          <---------ANAC58                                                   --------->GLK1(2)          <---------ANAC46                                                   <-----------ARR10         <-------TEIL                                                        --------->ARR14(3)    <-----------RAV1(2)  <---------ANAC58            <---------GLK1(1)       <---------ARR14(3)  ----------->RAV1(1)    <---------ANAC58     <---------AtLEC2               <---------AGP1 xxxxxxxsmallRNA(s)--------->MYB111(2)        <---------ANAC58     --------->ARR11(3) -------->At4g35610<---------MYB46(3)         <---------ANAC58     <---------ARR11(3)    <---------ARR14(2) ------->ANAC46 ------------>MYB.PH3(2)   <---------ANAC46    --------->ALFIN1<------ZmHOX2a(2) >HVH21<---------GLK1(2)<---------ANAC46  <---------ANAC58  <---------ANAC46 <---------ARR14(2) --->ANAC46    <---------AtMYB61          <---------ANAC58<---------ZAT14   <------ZmHOX2a(1)   tcagccacaggttcgtggaggttgttgccttgagaagatggatgacttgcatgagagttctgaagtggagaacttggaggatcttgttgtggaatcggtc  5463300                                                                                  <---------AtMYB61                                                                                  --------->ALFIN1                                                                                  <---------DEAR3(1)                                                                                --------->LBD16                                                                               <---------ANAC58                                                                               <---------ANAC58                                                                           <---------ANAC58                                                                           <---------ANAC58                                                                      --------->DAG2                                         --------->ANAC58        >>>>>>>ZML2   <---------ANAC46                                         --------->ANAC58        <---------HSFB2a(2)                                         --------->ANAC46        --------->HSFB2a(2)    --------->ARR14(2)                                      <-------TEIL               <---------HSFC1(1)     <---------ARR14(2)                                  <---------------AtSPL8     --------->GLK1(1) <xxxxxxxxxxxxxxxxsmallRNA(i)                              ---------->DOF2      --------->ATHB12  ---------->DOF2  <---------MYB46(3)                         <---------YAB1 <---------LBD16    <------ZmHOX2a(1)  <---------LBD16       <  --------->At4g35610  <---------At4g35610        <---------YAB1 --------->HSFC1(1)  --------->ALFIN1   gattagatgcctcgttttggacttcttctgataaaagaggtacacggacttcacgattagaggagttctagaaaagggcttgcggaggtggatagtcaga  5463400                              <--------P                                          --------->LBD16                             <-------GAMYB                                 <---------SPL7                     <----------DOF2                                <------ZmHOX2a(1)  ---------->DOF2              --------->ARR11(3)  ------->TEIL<----------DOF2  --------->ALFIN1------>NtERF2      <---------ANAC46<---------MYB46(3)--------->ARR14(2)   <---------bZIP60(2) <---------DEAR3(1)  <---------LBD16   <---------ANAC58    <---------ARR14(2)   <---------ANAC46  <------NtERF2 <---------LBD16    <---------ANAC46  --------->LBD16       <---------TOE2(3) --------->ANAC46 ---------LBD16     <---------ANAC58<---------LBD16   ----------->HVH21<---------MYB46(3)          <-   gactcggggagtgaatgaccttgcttgttggggttgaacccggactcgctcttgggatgactgaggtggaggattgttgtccgccggtgtaaagttgtat  5463500                               <---------ZAT6                          --------->ANAC46                         --------------->AGL15  --------->ZAT2            <----------DOF2--------->LBD16      <---------At4g35610          *TSS     --------->ALFIN1    <---------LBD16        --------->At4g35610         <-----------GT1 <------ZmHOX2a(1)       --------->LBD16        <---------ZAT2    <---------ANAC58 --------TOE2(3)        <-----------------AGL1<---------ALFIN1    <---------ANAC58       ------>ZmHOX2a(1)   tgaggaggtagaggctttattctattccccgtagtgggagtagaggctccagctctctgagtaacattgggttccatttttctcttccttcctcgcttag  5463600                                                                     <-------TEIL                                                                    --------->GLK1(2)                                                                    --------->CCA1(2)                                                                   --------->ARR11(1)                                                              --------->LBD16                                                           --------->CCA1(2)                                                           <------ZmHOX2a(2)                                                          --------->ARR11(3)                                                          --------->AGP1                                                          <---------ARR11(3)                                                          --------->ARR14(2)                                                          <---------ARR14(2)                                                         --------->GLK1(1)                                            ------------>CBF------>ZmHOX2a(2)       --------->At4g35610                                    <------ZmHOX2a(1)    <---------GLK1(1) ------------------------>ANAC81                                    ==============================HOX2a_HOX2a    ---------->DOF2                                    ===============================HOX2a_HOX2a>>>>>>>>>TBF1                               <---------STY1(1)        ----------->ARR10  >>>>>>>>>TBF1   <------ZmHOX2a(1)   ctagaggcatcaaatcgaacttgtttgcaaaccctagaggagacgattcaatgtgagagagatccgagagattcgaagaagaagaaagcagaaggagaac  5463700                                                          ----------->GT1                                          --------->At4g35610                    <------ZmHOX2a(1)     --------->CCA1(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                <------ZmHOX2a(1)---------->DOF2      --------------------->WRI1         --------->CCA1(2)     --------->ANAC58     --------->ATHB12        <---------ARR11(3)     --------->ANAC58    <-------TEIL        --------->ARR11(3)   --------->MYB52(1)<---------YAB1          --------->CCA1(2)   aattgatgaagatttagaggaaggattgaagaaacgaaagagagagatgaagattcattagggtgaatcgaagaaacgagagagagagagagagagagag  5463800                                                                                    --------->AHL20(2)                                                                                   <---------ATHB12                                                                          <------NtERF2                                                                       <---------LBD16    <---------TOE2(3)   agagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggcggaagacaaatgaattagggttct  5463900                                                         --------->LBD16                                                        --------->ANAC58                                                        --------->ANAC58                         >>>>                                                 <---------ICU4                                 -----                                           --------->TOE2(3) --------->ICU4                --------->AHL20(2)                                          ----------->GT1<------NtERF2              --------->At4g35610            <---------ICU4               <------NtERF2 <---------LBD16       <---------AHL20(2)<-----            --------->YAB1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------LBD16      <---------AHL20(2)           <---------ATHB12  <----------DOF2<---------MYB52(1)       <---------LBD16<---------At4g35610   tcatcagtcgctaatcaacacaaatattgggctttgtttgggcctcgttaattttggcccgcgataattttctcgggttttaattcagcacaattttttg  5464000                                                           <---------TOE1(2)                                                        --------->ATHB12                                                       <---------YAB1                                                     <---------ICU4                                                     --------->YAB1                      <---------ATHB12              --------->ICU4                    --------->WOX13(1)   <---------TOE2(3) <---------TOE2(2)  xxxxxxxxxxxxxxxxxxxxxxx                  <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->YAB1 <---------YAB1                  <---------MYB52(1)  <---------AHL20(2)--------->YAB1       <---------ANAC46 >>>>>ARR2      <---------MYB46(3) ------->TEIL  <---------AHL20(2)        <---------ANAC46  -------- ---->ATHB12    ----------->GT1  <<<<<<<<<EIN3  <---------AHL20(2)      <----------DOF2    ---------- ----YAB1  <---------YAB1  --------->RAP2.6(2)  --------->AHL20(2)--------->YAB1 <---------CCA1(2)   attgtagtcgcttattagtcgttaatcagtcgcaatgtatattaatgttttttaataatcataggttttcataactttggtgtatatccaaaacaaagtt  5464100  Previous    Next  AGI:  At2g13175.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 1.5e-34 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 5460938    to: 5463577    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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