Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <------NtERF2                                  <---------DEAR3(2)                             <---------TOE2(3)                            <---------DOF5.7(2)                                                     -                --------->TOE2(3) ------>NtERF2                                                   <--                --------->TOE1(3)<---------DEAR3(1)                                              <---           <---------At4g35610  --------->RAP2.6(3)                                              ----           --------->At4g35610 <-----------TGA1                                               -------           <------NtERF2  --------->DOF5.7(2)                                                <xxxxxxx ---------GLK1(1)        --------->At5g28300                                         --------->ARR14(2) ------TOE1(2)-------->P <-------GAMYB             --------->AHL20(2)  <----------DOF2      <xxxxxxxx   agaattcagtggcagcaaccttcatgcggttaacgtcggcatagttttgacaattgaatacgagttccattttcttttccaattccaaataggcatccag  5459700                                                              <---------ARR11(3)                           --------->REM1(1)                  --------->ARR11(3)              <------                       <---------HSFC1(2)                    <---------GLK1(1)                -------                       --------->HSFC1(2)                    --------->GLK1(1)                <------ <---------YAB1        <---------HSFB2a(1)                   --------->CCA1(1)               <------- -------->KAN4(2)      --------->At4g35610     <-------TEIL  <---------CCA1(1)              --------- ----ZmHOX2a(2)   --------->ALFIN1            --------->CCA1(2)                           <---------LBD16 ------ARR11(3)<---------AtMYB61       ------>NtERF2         <---------RVE1(1)    <---------ANAC58 ----->ARR11(3)--------->DAG2--------->At4g35610             --------->RVE1(1)    <---------ANAC58 -->HSFB2a(2)---------->DOF2 <---------At4g35610      --------->TOE1(3)           <---------ANAC46 xxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->MYB46(3)     <---------ARR11(3) <---------CCA1(2) xxxxxxxxxxxsmallRNA(se3) <-------TEIL--------->RAP2.6(2)   --------->ARR11(3)<---------TOE1(2)    <-   atcattcttcccatggaaaggtggaagcttcatctgatagccaccaagattcaaaaccataagatatctttcttctctcgcatgtcttggtctccggtta  5459800                                                                                  <----------DOF2                                                                          --------->MYB52(2)                                                                          <---------MYB46(3)                                                                          <------MYB46(1)                                                                         <---------TOE1(2)      --------->At4g35610                                                <---------TOE2(2)      <---------At4g35610                                               <---------MYB52(1)  <-----------HVH21      ----------->GT1         <---------WRKY38(1)   <-------GAMYB --------->LBD16       --------->At4g35610       <---------WRKY12     <---------DEAR3(1) ---MYB52(1)           <---------At4g35610      <<<<<<<<<<WRKY11      --------->MYB55(2) -->ARR14(2)           <---------ZAT2           <<<<<<<<<<WRKY6       <---------MYB46(3) ---ARR14(2)         <---------RAP2.6(2) <----------DOF2<---------ARR11(3)--------->MYB55(2)      <-- --MYB52(1)        <---------MYB46(3)   --------->ARR11(3)     <----------DOF2 <-----------GT1<------ >LBD16     ----------->HVH21   <---------YAB1 <-----------HVH21      --------->MYB52(2)--------->At4g35610 --------LBD16<---------At5g28300      <---------At4g35610 <----------DOF2<------MYB83  <---------At4g35610   ctccggtgagatgagtgaccgtggctgctgtaatattcttgagctcttgggtcaactaggtctttctttgggtcgttggtttgacttttcatctcccttt  5459900                                                                         <---------ANAC58                                                                         <---------ANAC58                                                                     <---------WOX13(1)                                                                    <---------ANAC58                                                                    <---------ANAC58                                              <----------DOF2      <---------MYB46(3)            <---                                             <---------DAG2      <---------MYB52(1)         ---------                                        <----------DOF2         <-------GAMYB               <--------              --------->LBD16          <---------ANAC58        ------>ZmHOX2a(2)            <-------- -------TOE2(3)                        <---------ANAC58        <---------MYB46(3)          --------->YAB1 ----DOF2 ------>ZmHOX2a(1)       <---------MYB46(3)<----------DOF2--------->ATHB12        --------->AHL20(2)   gagattgctctccttccgagattacaacttgttcatcgggtgctttcccttttgctttaagttgatcgttgattggcttaagcttgacatctattatatt  5460000                                                                                       --------->ANAC46                                                                                      ------->GAMYB                                                                                     <---------MYB52(2)                                                                                     --------->MYB46(3)                                                                                     <---------MYB55(2)                                                                                 --------->MYB46(3)                                                                                 *TSS<---------MYB111(2)                                         --------->ZAT6                         -------->P                                       <-----------GT1                          ------>MYB83        --------->DAG2          <------MYB83                                    ------>MYB46(1)       ---------->DOF2          <------MYB46(1)                            --------->ARR14(2) -------    --------->YAB1              ----------->GT1                       <---------At5g28300 -----------   <---------ATHB12          <---------ANAC58                        <-----------GT1 XXXXXXXXXXXXXXXX --------GT1                 <---------ANAC58                      <-----------HVH21------>MYB46(1) >AHL20(1)                   <---------ANAC46                     <---------MYB46(3)------>MYB83 -AHL20(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <-------GAMYB  ------>ZmHOX2a(1) -AHL20(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       --------->ATHB12<---------MYB52(1)---------   ctccaatcgtaaagtgatagcatcgatgatggcttggttattaacactcttcttcgagcttgattcggttgtcaccgtttcctaccaacaaacaacacta  5460100                                                                              --------->YAB1                                                                              <---------ICU4                                                                             <---------ATHB12                                                                            ------>MYB83                                                                            ------>MYB46(1)                                                                           --------->WOX13(1)                                                                         --------->MYB46(3)                                                                         ------------>CBF                                                                        -------->P                                                --------->ZAT6         --------->WOX13(1) -->ANAC46                                      --------->ANAC58   --------->WOX13(1)         ------- >RAV1(1)                                       --------->ANAC58  <---------AHL20(2)         <------- XXXX>MIR2939                                  --------->ZAT18    --------->AHL20(2)         <------- >ZAT6          --------->YAB1      ------>ZmHOX2a(1)            --------->AHL20(2)          --------   aacgagtcactagttcaaggagaatatcaaacgttttcctaataacaggcacactagatcgaacaaaataaatcaaccaatcatgctcaaaaattccaga  5460200                                                                                    --------->AHL20(2)                                    <------ZmHOX2a(2)                 --------->AHL20(2)        --------->AHL20(2)         --------->ARR14(2)                <---------ATHB12    <---------AHL20(2)             <---------ARR14(2)              --------->WOX13(1) --------->YAB1-   --------->AHL20(2)              --------->AGP1              --------->ANAC46     <---------AHL20(2) -->LBD16                         <---------At4g35610          --------->ANAC58    --------->AHL20(2) --HSFC1(1)                       --------->At4g35610  <---------AHL20(2)     <---------AHL20(2)  --- --HSFB2a(2)              ------>ZmHOX2a(1)--------->ATHB12    --------->ANAC58--------->ICU4     <-- ->HSFB2a(2)              =================HOX2a_HOX2a--------->AHL20(2)     --------->YAB1  --------   aacaattttataaaatactagtctcgtcctcgattcagatccaattgatttcgcaattttatcccaagccaattatctataaaaattaaaataatgtgac  5460300       --------->MYB52(1)     --------->CCA1(2)   --------->YAB1                                                        --------->AHL20(2) --------->DOF2--------->At4g35610                                    <------ZmHOX2a(1) ------>At4g35610                                                     ----------->GT1 -------At4g35610                                                    ----------->GT1 --->HVH21     <---------At4g35610 --------->ICU4               <---------YAB1 --------->ANAC46<-----   agcaaagataaacggacagatgagaaaatgaaacgagatgatgaaatgaattgaattgatgaagtgatgaaaggataaaatactcaacttcagagtgtat  5460400                                                                                                -----                                                    ---------->DOF2                             <----   --------->ANAC58                              <---------MYB52(1)                         ---------   --------->ANAC46           --------->YAB1    <---------RAP2.6(3)                  <---------HSFB2a(2)   --------->ANAC58      <---------ZAT14       ----------->GT1           <-----------GT1    <-------- ----ZAT14        <-----------GT1      ---------->DOF2     --------->MYB111(1)       --------->HSFB2a(2)   actacaagaaaacacagtttttacgactgcaatattagtcgcaaagtagccgttaaaagagtagttacgactatgttacgactaattctcgatgtcggaa  5460500                                                                                    <---------ANAC58                                                                              --------->ARR11(3)                                                                            ----------->ARR10                                                                           <---------TOE1(2)                                                                         <---------SPL7                                                                        <---------ANAC58 ---->GLK1(1)                                        --------->CCA1(2)  <---------ANAC58 -----GLK1(1)               --------->TOE2(3)     --------->ANAC46      <---------ANAC46 >ETT(1)   -------->P ----------->GT1     --------->MYB52(1)      --------->LBD16  ---------->ID1 -ANAC46  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------YAB1 <---------HSFB2a(2)<---------ANAC58   atccatagtcgctaacccaaatagtcgtaacattagtcgctaaataacgactacgatacgactaattcccgatgtcgtaagatttgtcgtaacatagtcg  5460600  Previous    Next  AGI:  At2g13170.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 2.2e-88 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 5455798    to: 5460081    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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