Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->AHL20(2)                                 ---------                                         <---------AHL20(1)                                --------->RAP2.3(2)                                         <---------AHL20(2)                                --------->RAP2.6(2)          --------->ANAC58               --------->AHL20(1)                              ------>MYB83          --------->ANAC58              --------->AHL20(2)                               --------->ZAT2 ------->ANAC58                     <------ZmHOX2a(1)                          --------->At4g35610 ------->ANAC46                    ----------->GT1                       <---------ANAC46------>MYB46(1) ------->ANAC58                 <---------ANAC58               <---------ARR11(3)        --------->At4g35610 --->ZmHOX2a(1)                 <---------ANAC46               --------->ARR11(3)       --------->ANAC46 --ARR10---------->DOF2         <---------ANAC58         <---------HSFB2a(2)   <---------At4g35610   ctcgcaatttcaaagcaaactatgcgagggttttgcgaggaaataaatttctatatatactcgaagacctagtttgagtgaagctcaaaccagccgcatc  5448600                                                   --------->ARR11(3)            <------NtERF2                                                  <---------GLK1(1)             <---------ATERF1(1)                                                  <---------At4g35610           ------>NtERF2                                                  --------->GLK1(1)             --------->ABI4(1)                                                <------NtERF2                  --------->RAP2.6(2)                                               --------->LBD16                 <---------ATERF1(2)                                              <---------DEAR3(1)               --------->RAP2.3(2)                                              --------->DEAR3(1)               --------->RAP2.3(3)                                             --------->ATERF1(1)               --------->DEAR3(1)                                             <------NtERF2                     --------->ANAC46                                             <---------LBD16                  <------NtERF2                                             --------->RAP2.3(1)              --------->DEAR4(2)                                            <---------RAP2.6(1)               --------->ORA47(2)                                            <---------RRTF1(1)                --------->ATERF1(1)                                            <---------RAP2.3(1)               --------->ERF1                                            ------>NtERF2                     --------->RAP2.3(1)                                            <---------ATERF1(1)              ------>NtERF2                                            <---------ERF1                   <---------RAP2.3(1)                                           --------->DEAR3(1)                <---------ATERF1(1)                                           <---------DEAR3(1)               --------->DEAR3(1)                                           <---------RAP2.3(2)              <---------DEAR3(1)                                          --------->ATERF1(1)              --------->ATERF1(1)                                          --------->RAP2.3(1)             <-----------HVH21                 <-----------GT1         <---------RAP2.3(1)             <---------ANAC58       --------->TOE1(3)                 <---------ATERF1(1)      ------>ZmHOX2a(2)      --------->ZAT6               ------>ZmHOX2a(2)             <------ZmHOX2a(2) --------->TOE2(3)           --------------------->WRI1         <---------ARR14(2) --------->TOE1(3)   <<<<<<<<<TBF1--------->GLK1(1)<---------ARR11(3)    <---------ANAC58     <<<<<<< >LBD16--------->TOE2(3)<<<<<<<<<TBF1   <---------DEAR3(1)      --------->ARR14(2)         <<<<<<<<<TBF1   aaaccctaaccctaaattttttcttcttcttctctgatctcttcggcgccggagctcttcttctccgatctgattccgtcgccgcctctcttcttcttct  5448700                                                                     <------NtERF2                                                                    ------>NtERF2                                                                    <---------ATERF1(1)                                                        <---------GLK1(2)                                                      ----------->ARR10                                                      --------->DEAR3(1)                                                     <------NtERF2 --------->ANAC46                       <------NtERF2                 --------->ATERF1(1)                      ------>NtERF2                 ------>NtERF2  --------->RAP2.3(3)                      <---------ATERF1(1)           --------->At4g35610                      --------->ABI4(1)             <---------ATERF1(1)        <<<<<<<<<TBF1                     --------->ANAC46              <---------ANAC46--------->DEAR3(1)                     --------->RAP2.3(2)         <---------RAP2.3(1)--------->ABI4(1)                     --------->DEAR3(1)         <---------RRTF1(3) <---------ATERF1(2)                     --------->RAP2.3(3)        --------->ANAC46  --------->ATERF1(1)                     <---------ATERF1(2)        <---------RRTF1(2)--------->ORA47(2)                     --------->RAP2.6(2)        <---------RAP2.3(3)--------->RAP2.6(2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         --------->DEAR4(2)                <                    --------->RAP2.3(1)         <---------RAP2.3(2)--------->RAP2.3(2)              -                    --------->ATERF1(1)        <---------At5g28300--------->RAP2.3(1)               -                    --------->ORA47(2)         <---------LBD16   <---------ATERF1(1)              <--                    --------->ERF1            <---------ICU4     <---------RAP2.3(1)              ---                    --------->DEAR4(2)        <-----------GT1   --------->ANAC46                  <--                   <---------ATERF1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               ------                  --------->DEAR3(1)    <------ZmHOX2a(2)    <xxxxxxxxxxxxxxxxsmallRNA(i)      <----- <<TBF1        <---------ICU4         xxxxxxxxxxxxxxxx>smallRNA(i)--------->ERF1       ------>ZmHOX2a(2)   tctctaatctgttatactcatcgccgcctctcttcttctccgatctaattacggcgcagactctcttcgccgcctctcttcttcttcgatctgtgctcca  5448800         <-----------ARR10         <---------ARR14(2)         --------->ARR14(2)        <------NtERF2       ------>NtERF2      <------NtERF2      <---------DEAR3(1)     ------>NtERF2     <---------At4g35610     <---------LBD16     --------->LBD16     <------NtERF2    --------->DEAR3(1)    <---------ATERF1(1)   --------->ATERF1(1) --------->DEAR3(1) ------->GAMYB                             <---------TOE2(3) ------------AtMYB77                   <------NtERF2 -------->DEAR3(2)                  ---------->ID1                                   ----------->HVH21 -------->MYB46(3)              <---------MYB52(1)                                <---------ARR14(2) -------ARR14(2)             ------>ZmHOX2a(2)                                    <-----------ARR10 ------>ARR14(2)           --------->ARR14(2)                                     --------->ARR14(2) -------GLK1(2)            <---------AGP1---------->DOF2              <---------ARR11(3) --->HSFB2a(2)             <---------ARR14(2)                         --------->ARR11(3)        <<<<< ----HSFB2a(2)      ----------->HVH21----------------->AGL1     <------ZmHOX2a(2)<---------CCA1(2)   gaaccgccgcggctcttcttctctgactcgatctgtttggcctcaaaggtaacctctgtttctccgatctaagttcttctctcaaatctgacctattctt  5448900                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                            <---------ARR11(3)                            --------->ARR14(2)                 <----------DOF2  --------->ZAT6                <------NtERF2                       <        <------ZmHOX2a(2)   <---------ARR14(2)                 ------>NtERF2                        <       <---------ARR14(2)   --------->ARR11(3)                 <---------SPL7                       <       --------->ARR14(2)   --------->AGP1                     <---------RAP2.6(3)              <----    ------>ZmHOX2a(2)       <-----------ARR10                  <-----------HVH21                -----   <------ZmHOX2a(2)        <---------AGP1                    <---------ANAC46                 ------  <---------ARR14(2)    <---------LBD16                       *TSS       <---------ICU4     ---------  --------->ARR14(2)  <-----------GT1  --------->ATHB12       <---------ANAC58     xxxxxxxxxxxxxxxx>smallRNA(s) <<<<TBF1------>ZmHOX2a(2) <---------CCA1(2)                  <---------ANAC58   <---------LBD16-----   cttcgatccgatcttacttcttttttcccagatctaacacttgatttgttttttgtgcaagatgccgtcggataatacttatgtccggtttagacaacag  5449000            <---------ANAC58            <---------AtLEC2         <---------MYB52(1)  ----------->HVH21                       <-----------ARR10                                         - <-----------HVH21                        --------->ARR11(3)                                      --- ---------ANAC46                   <---------ANAC46                 <---------TOE1(3)<---------ALFIN1 ---------ANAC58                 <---------MYB46(3)     <---------TOE2(3)   --------->MYB46(3)   ---- ---------ANAC58          <---------At4g35610           <---------TOE1(3) <-----------GT1        ---- -----At4g35610         <---------LBD16   <---------ARR11(3)  <---------TOE1(3)      --------->AtMYB61 ---->At4g35610       <-----------GT1   ---------->TaMYB80  <-------TEIL<-------TEIL--------->MYB46(3) ->GAMYB<-----------HVH21 --------->At4g35610 <---------LBD16<-----------RAV1(2)  <xxxxxxxxxxxxxxxxxx -->RAV1(1) <---------ANAC46    <---------AtMYB61    <-------TEIL  <-----------RAV1(2)      ------>NtERF2 ---->ZAT2  <---------ANAC58<----------DOF2   <-----------RAV1(2) <-------TEIL  --------->SPL7   ----   cagcgtgacccgttgcatgtcaattctccgcttagtggtgggaatatctcaggggttcaaggttcaggttcaggttcaaccgttccaccatcgcctccaa  5449100                                                                                                   --                                                                                                 <---   --------->MYB46(3)                                                                            <--- --------->MYB52(1)                                                                            ------ ------>NtERF2                                                        <---------GLK1(1)     <-------- -------->DEAR3(1)     <---------ICU4   ----------->HVH21            <---------ARR11(3)    <xxxxxxxxx ---->GAMYB            -------->ATHB1   --------->WRKY12             --------->ARR11(3)  <---------ANAC58 ----->ANAC46          --------->YAB1 --------->ZAT2  --------->GLK1(2)              ------>ZmHOX2a(1) ----->ANAC58         <---------ATHB12--------->At4g35610   --------->ZAT6 <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxsmallRNA(l2)  --------->WOX13(1)<---------ZAT2--------->MYB46(3)--------->GLK1(1)  <---------ANAC58 ----->ANAC58    <-----------HVH21    <---------At4g35610----------->HVH21 ------>ZmHOX2a(1)---------   cgccaacgactcagccttctgtcaatcattctgatgttcaagctgaccgtctcaacaatctgacactggaagagctcctcgatagtcctggtcgtgctgg  5449200                                      --------->YAB1                           --------->LBD16                           <---------HSFB2a(2)                                        --------->MYB52(2)                          --------->HSFB2a(2)    <---------At4g35610                  ----------->ARR10 --------->HVH21          <---------LBD16  ----------->GT1            --------->ARR11(3) ------ANAC58            <---------LBD16  <---------TOE2(3)          <------MYB83   <--------P ------ANAC58           ------>ZmHOX2a(1) <---------TOE1(3)  --------->HSFB2a(2)  <------MYB46(1) >NtERF2               <---------SPL7<---------TOE2(3)       <---------HSFB2a(2)  <---------MYB46(3) -ZAT2         ---------->DOF2 --------->GLK1(1)<---------TOE2(3)    <------MYB46(1)<---------MYB52(1) xxxxxxxxxxxxxsmallRNA(le3)--------->HSFB2a(2)  <---------TOE1(3)   --------->MYB59<-------GAMYB >ZAT2  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->DAG2    <---------LBD16       <------MYB83<------   cttgacaaggctagacccaaagcgtcctccgggaactctatggtaaggttaagcttatagtctctggaattaggtcttgtaagttggttagttctgcttt  5449300                                                                                         <---------ANAC46                                                                                         <---------ANAC58                                                                                         <---------ANAC58                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)            <-------GAMYB                                       <---------ARR14(2)                               <------MYB83                                     <------MYB83                                       <------MYB46(1)                                     <------MYB46(1)                                    <---------MYB46(3)                                     <---------DEAR3(2)                                 --------->MYB55(2)                                     <---------MYB46(3)                                 --------->MYB52(2)                                    --------->MYB59                                    <---------AtMYB61       <---------ARR14(2)           <---------AtMYB61                                  --------->MYB111(1)       --------->ARR14(2)          <--------P--------->TOE2(3)  --------->TOE2(3)     <--------P     <------MYB46(1)            <---------TOE1(3)       <------MYB83               <---------TOE1(3)     <------MYB83               <---------TOE2(3)       <------MYB46(1)            <---------TOE2(3)    --------->MYB59     <---------LBD16--------->ARR14(2)    ------>ZmHOX2a(1)     --------->MYB59 ----DOF2    --------->TOE2(3)  --------->MYB59        --------->MYB59     <---------LBD16<----------   agaagtttggttctgccttagaagtctctggatttaggttggttctgccttagaagtttggtcctgccttagaagtctctggatttaggttggttgtact  5449400                                                <-----------RAV1(1)                                    ------>ZmHOX2a(2)           <------MYB46(1)                     <                                   <------ZmHOX2a(2)            <------MYB83                        -                                  --------->ARR11(3)           <---------TOE1(2)                    <                                  <---------ARR11(3)       <---------YAB1                           -                                  --------->ARR14(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)------                                  <---------ARR14(2)    <---------YAB1                        -------                                 <---------GLK1(1)      <---------MYB52(1)                  ---------           <---------ANAC46      --------->GLK1(1)   <---------ANAC46 <---------TOE2(3)   --------->At4g35610 -----AtSPL8          ---------->DOF2 ------>ZmHOX2a(1)<-------GAMYB----------->HVH21     <---------At4g35610   tagcattgtagtttcttagaagtataaagacatagagatccttatgtgttttgttgctgttattgtaggtttgacgatgactctacaattgcagcaacag  5449500  Previous    Next  AGI:  At2g13160.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-126 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 5448962    to: 5451137    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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