Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <<<<<<<ZML2                        ------->TEIL                        --------->ARR14(2)                        <---------ARR14(2)                       <---------CCA1(2)                     --------->ANAC55(2)                 <---------ICU4                    <---------TOE2(3)                    --------->ATHB12                    <---------TOE1(3)                   --------->ICU4           <---------WRKY18(1)                   <---------DOF5.7(2)                  <---------YAB1          ----------->HVH21                 --------->DOF5.7(2)                 <---------YAB1      <---------ZAT2         --------->ARR14(2) ===========================HOX2a_HOX2a       ----------->RAV1(2)         <---------ARR11(3) --------->HSFB2a(2) <------ZmHOX2a(2)      <---------ALFIN1         <---------ARR14(2) <---------HSFB2a(2)--------->ARR11(3)   <-----------GT1 ----->ID1    ---------->ID1------>ZmHOX2a(1)  <---------ARR11(3) <---------AHL20(2)                -   agctattgcaagatttgttgttaacgtatcctagaacatagctgttcaagatcatatgattattggattttatccacctggtttgacctgtgcaagggtt  5417200                                            --------->AtMYB61                      <------ZmHOX2a(2)                              --------->ZAT14                                     <---------ARR11(3)                              --------->ZAT18                                  <---------HSFB2a(2)                        ------->GAMYB--------->YAB1                            --------->HSFB2a(2)                     --------->MYB52(1)  <-----------GT1                      <---------LBD16                   <---------YAB1  --------->At5g28300                  --------->YAB1                 --------->YAB1   ----------->GT1                   ------>ZmHOX2a(2)     --------->ZAT6           <---------ALFIN1   <---------ZAT18                     <---------ARR11(3) --------->TOE2(3) -------->ANAC46<---------YAB1<---------ZAT14                     --------->ARR11(3)<--------HAHB4  <   ccaaaccatggctccactattatcaacggtagtgcacagtaataaaccatcacagtgagagataatatgatctataatgttctggatcattaactctaag  5417300              <---------ATHB12          <------NtERF2         <------NtERF2                                                                              <         --------->ANAC58                        <---------WOX13(1)                                 <         --------->ANAC58                   --------->LBD16                                        <-      ---------->ARF1   ---------->DOF2    --------->ANAC46                             <---------AHL20(2) -----------GT1       <------ZmHOX2a(2)   <---------LBD16 <---------YAB1       ------>NtERF2   <-----   tttaacttggcccccaatggatggatcaaagctgttttggattccacggagattgatactatgaattagagtattcatctctgccactaaataatcccca  5417400          <------ZmHOX2a(2)         <---------ARR11(3)         --------->ARR11(3)     ---------->DOF2   <---------YAB1<---------ANAC58  --------->TOE2(3)--------->ALFIN1 <---------ICU4  <---------ANAC58                              --------->HSFB2a(2)       ---------->DOF2 <--------HAHB4  <---------ANAC55(1)                           <---------HSFC1(1)     --------->ANAC46 --------->YAB1 <-------TEIL  --------->YAB1      --------->ANAC58                    --------->ANAC58 ------ZmHOX2a(2)--------->ANAC55(2)   <---------ANAC58        <---------HSFB2a(2)    --------->ANAC58 ---------YAB1<-------MYC3    <-----------GT1     --------->ANAC58       <---------HSFB2a(2) --------ARR11(3)<---------ANAC46      <---------ANAC58     ------>ZmHOX2a(1)      <-------TEIL     - ----ALFIN1   ------->MYC3 <---------ICU4    <------ZmHOX2a(1) --------->HSFC1(1) --------->CCA1(2) -   cgatcattaaagatcacatgcgtgttggataattacaacttacttgaggagcaagttatctccttctagaagatgctagaagagatacaagaaaagaaat  5417500             --------->ANAC58             ----------->GT1                                           <---------------AGL15             --------->ANAC58                                          --------------->AGL15          <---------ATHB12                                            <-----------------AGL1      ---        --------->GLK1(1)                                             <-----------GT1        <------MYB83        <---------GLK1(1)                                             --------->YAB1         <------MYB46(1)  ---------->DOF2                                          --------->ICU4       ---------->DOF2   === -------->ANAC58                 <---------ICU4    --------->ARR11(3) ----------------->AGL1--------- -------->ANAC58   ---------->DOF2               ----------->ARR10------>ZmHOX2a(1)     --------->ALFIN1   tcaagaaaggaaatcaagaaaaaaagaaatacaaataatgtcaagttggataagatttgtaagtattcctattcacaatagggaaaggaggtgtttggtc  5417600                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                  ---             ------>ZmHOX2a(2)                                                                    <--            *TSS                                                                                  ---           --------->ARR11(3)                                              --------->At4g35610    ---     <---------AHL20(2)   >>>>>>>>>TBF1         ---------->DOF2            <---------At4g35610   ---- --->ZmHOX2a(1)        >>>>>>>>>TBF1         <---------At4g35610  ---------->DOF2                <--- ===================HOX2a_HOX2a              --------->At4g35610<------ZmHOX2a(2)  --------->CCA1(2) >MYB59    <---------ARR11(3)       --------->ZAT6            <------ZmHOX2a(1)   <---------ARR11(3)-   ctagtatatatatgatctctatgaagaagaagaagataacacaagagagctaaagcatccaagaggatcaaagagagagctcaagatgtgagtcaagaga  5417700    ------>ZmHOX2a(1)   --------->TOE2(3) ------->GLK1(1) --------GLK1(1) -----ZmHOX2a(2)                                                              <---------ZAT2 -------ARR11(3)                                                              --------->At4g35610 ------>ARR14(2)                                                              <---------At4g35610 -------ARR14(2)                                                            <--------P ------>ARR11(3)                                                        <---------TOE1(3) ------>ARR14(3)                      <---------ANAC58                 --------->MYB52(1) ----->GLK1(1)                        <---------ANAC58        --------->CCA1(2)        <------------- ------GLK1(1)                     --------->TOE2(2)         <---------ARR11(3)        -------------- ----->ZmHOX2a(2)                  --------->TOE1(2)         --------->ARR11(3)       ---------------   gatctccttagagtcgagagagacctcatgagataaacatgcgagtcgagagagacttcatgagatatagacttaagggtagctcagttctatatagaga  5417800                                --------->ARR11(3)                                                 --                          --------->ANAC58                                                        ---                          --------->ANAC58                                                        <-- --AGL15       <---------HSFB2a(2)                                                            ------- ->AGL15       --------->HSFB2a(2)                              --------->ARR11(3)           -------- -->AGL3  <---------MYB46(3)---------->DOF2 <----------DOF2 ---------->DOF2    <XXXXXXXXXXXXXXXXXXXXMIR841   gactatggagagttgttccataagtctcaagaaagacattgagaggctttagagagttgttctaaagacctagagagatttagttttgagtagtttctaa  5417900                                                   --------->ARR14(2)                                           --------->ANAC46                                           ================================bZIP_DOF                                           --------->ANAC58                                           ================================bZIP_DOF                                           <---------TGA1a         --------->DAG2                    --------->ANAC55(2)        =============================================bZIP_DOF        ---------->DOF2                    --------->TGA1a                         <----------DOF2   ---------->DOF2                         <---------O2                          --------->At4g35610   ==================================================bZIP_DOF                    <---------At4g35610 ------->AHL20(2)   <---------AHL20(2)     --------->O2                          --------->ZAT2 ------>AHL20(2)    --------->AHL20(2)     <---------ANAC55(2)     <-----------HVH21 -------AHL20(2)  <----------DOF2          --------->ANAC58 <----------ID1  --------->ANAC58 -------->AGL15   ===================================bZIP_DOF   ---------->DOF2  <---------ZAT2 --------->AGL3 <------------------------ANAC81    <---------ARR14(2)       --------->ANAC58<XXXXXXXX   ataaataaagaaaagttgttctttaatttgttttgttcttgaatcacgtctcaaatccttgagagacaaagtcagagcaagtcagctttgatgtgaattg  5418000                                               --------->ANAC58                                        --------->ALFIN1              <---------ARR14(2)                                      <---------ANAC58         <------MYB83--------->MYB46(3)                                      <---------ANAC58         <---------ANAC58                                      <---------ANAC46         <------MYB46(1)--------->MYB46(3)                                    <---------MYB46(3)        <---------MYB46(3)                                   <---------DEAR3(1)         <---------DEAR3(1)                                   --------->ALFIN1           --------->MYB55(2)                                   <---------AtMYB61          --------->MYB111(2)                                <---------DEAR3(1)        <---------DEAR3(1) --------->ANAC58                               <---------ORA47(1)  --------->ANAC58   --------->ARR14(2)                              <------ZmHOX2a(1)--------->ANAC58<---------ANAC58                          --------->TOE1(2)  <---------ANAC46<---------MYB55(1)------->GAMYB                        <------ZmHOX2a(2) ----------->HVH21  --------->ALFIN1--------->ANAC58 ------>ZmHOX2a(1) XXXXXXXXXXXXMIR845A    =============HOX2a_HOX2a   --------->ANAC58   --------->GLK1(2)      --------   gtatcagagcttaagttgaagactcgatccaaggacggtggtgtgtgactcgtaagcaagacggtgggtgagaatcgacaaccaagaacgatagtcctta  5418100  Previous    Next  AGI:  At2g13116.1    Description:  pseudogene, hypothetical protein Range:  from: 5417007    to: 5417612    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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