Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <--------P                                        --------->LBD16                   <---------REM1(2)  ------->MYC3                  <---------ANAC58                   --------->ZAT14    <-------MYC3                  <---------ANAC58                 --------->ANAC46    --------->ANAC46      <---------ANAC58             ------->GAMYB  ------------------>SPL14       <---------ANAC58      <------ZmHOX2a(1)         --------->GLK1(1) ----------->HVH21          <---------At4g35610  <---------YAB1   --------->MYB52(1) --------->ANAC46<---------LBD16 --------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------->YAB1 <---------ALFIN1   <---------REM1(2)---------->DOF2  <---------ANAC46   <------------- -------DOF2--------->MYB46(3) <---------MYB59  --------->CCA1(2)  <---------ZAT2--------->YAB1   tttaataacggataaccacacttcacgctgtgaccttacacgcgggtaagatagaaagcttacttgccctgcttgtgatgctaggataaatggttcgaac  5349400                                                    --------->ANAC58                                                    --------->ANAC58                                                    --------->ANAC46                                                --------->ANAC55(2)               --------->YAB1                                                <---------ANAC58                ------>MYB46(1)                                 --------->ANAC58  --------->SPL7               ------>MYB83                                 --------->ANAC58  ------->TEIL         =============================                               <---------ALFIN1 <---------ANAC58        <------ZmHOX2a(2)                             --------->AtMYB61 --------------->AtSPL3  --------->AGP1xxxxxxxxxxxxxxxx                             <---------ALFIN1  --------------->AtSPL8  <---------ARR11(3)      <-----                   ----------->HVH21      <---------YAB1               <-----------ARR10   ----------       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <-----------GT1<------ZmHOX2a(2)  --------->WOX13(1)---- --AtSPL8       <---------AtLEC2 --------->ANAC46<---------SPL7 <------ZmHOX2a(2)<---------ATHB12----   ttggcataagtcttgtttgcattgacatcgaccacacctaagttatttttccgtaccccacgatcgatcaccagatcaaaccaatcacacttgaaaagga  5349500                                  <---------HSFB2a(2)                                  --------->HSFC1(1)                        --------->KAN4(2)                       <---------GLK1(1)                                                          <--                       <----------TaMYB80                                                         <-- =HOX2a_HOX2a         <---------ARR14(2)                                                  --------->ATHB51 xxxxxxx>smallRNA(si3)--------->ARR14(2)                                               -------------- -ZmHOX2a(1)          <---------ARR11(3) <-----------GT1                               --------->TOE2(3) >DOF2      ---------->DOF2       --------->HSFB2a(2)                                  <------------- ----->ANAC58      ------>ZmHOX2a(1) <---------GLK1(2)               <-----------GT1  --------------- ----->ANAC58     <---------LBD16 <---------HSFC1(1)     ---------->DOF2   ----------->HVH21      ---   cgcatttcaaattcaaaagtcctggatattcgacttctagaatttgctatacaatcccataaaactcagtttcaccttcgacatggattccataatttgc  5349600                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             --------->AGP1                                                                             --------->ARR14(2)                                                                             <---------AGP1                                                                             <---------ARR14(2)                                                                             <---------ARR11(3)                                                             --------->At4g35610     ------>ZmHOX2a(1)                                       <---------ZAT2  --------->ARR11(3) -------At4g35610              ---------->DOF2  --------->ZAT14         ------>ZmHOX2a(2) -----GAMYB             <---------ANAC55(2)     --------->ZAT18       <---------ARR11(3) ->AGL15                --------->ANAC55(2)     <---------ZAT14<---------MYB46(3)                   - --AGL15               <-------TEIL ---------->DOF2  <-------TEIL     --------->ARR11(3)            - -->AGL3             <---------ARR14(2)   ------>NtERF2      --------->ZAT2 <---------CCA1(2)       - ------>At4g35610    --------->ARR14(2)   --------->LBD16    <---------At4g35610                    -   agttgtccttcgacttccatatggatacgtctgaaaagtatagccgcgagtgaagtacatcggagctgttgtgatcttagatcttggttcttgaacgagc  5349700                                                                          <---------AHL20(2)                                                                      --------->YAB1                                                                     <---------YAB1                                                                    <-----------GT1                                                                  <---------AHL20(2)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <---------AHL20(1)       ---------->DOF2                                        <---------AHL20(2)      ------->GAMYB                                      --------->ICU4   --------->AHL20(2)     --------->MYB46(3)                                  --------->ARR11(3)    --------->ANAC58                                     --------->AHL20(1)    --------->ANAC58                                     <---------AHL20(1)              <---------ANAC55(2)   <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ARR14(2)   ----------->GT1<-----------GT1 --------->AHL20(2) -------->ANAC46         --------->ARR14(2)    <---------ALFIN1   --------->AHL20(2)     --------->ANAC55(2) -------->ANAC58      --------->MYB52(2)      ------>MYB83    --------->AHL20(2) ----------->GT1 -------->AtLEC2     <-------TEIL             ------>MYB46(1)--------->AHL20(2)---------->DOF2 -------->ANAC58  <---------MYB46(3)<---------MYB52(1)   <---------ARR11(3) *TSS<---------TOE2(3)   tcatgcaaccaaagtggtaatggttcgtttccacatccgtttgtaacctacacatagaaaatattaaatttatcatttttttaaagtaaataagtaatcg  5349800                                                        <----------DOF2                                                        --------------------->WRI1                                                      <------ZmHOX2a(2)                      --------->YAB1                 --------->ARR11(3)                <---------YAB1                       <---------ARR11(3)              --------->YAB1                     <-----------GT1             <---------YAB1           --------->STY1(2)------>ZmHOX2a(2)  <----------DOF2          <---------YAB1         <-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(i)               <------ZmHOX2a(1)          <---------AHL20(2)   <---------AHL20(2)--------->YAB1   <-------TEIL     <---------------AGL15   aatttttgaaatattattatactaacatagtattttaactatctagcaaaatcacgatctttgtaagtttcatactctttttcttctaattcaggacatg  5349900                                                                                <---------YAB1                                                                              --------->ATHB51                                                                              -------->ATHB1                                                                              <---------AHL20(2)                                                                              <--------HAHB4                                                                              --------->YAB1                                                                              -------->HAHB4                                                                              <---------ICU4                                                                             <---------ATHB51                                                                             --------->ICU4                                                                             <---------YAB1     <----                                                                     <-----------GT1        ---------                                           --------->At4g35610  <---------AHL20(2)     --------->AHL20(2)                                        --------->ZAT2         <---------AHL20(1) <---------AHL20(2)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    ------>ZmHOX2a(1)  <---------ATHB12<-------               --------->AHL20(2)       <---------At4g35610    --------->AHL20(2)<---------AHL20(2)        ----------->GT1        <-----------GT1           --------->TOE2(3) --------->YAB1  <---------ICU4     --------->ARR14(2)  ------>MYB83  ------->TEIL --------->At4g35610--------->ZAT6  <---------AHL20(2)     <---------ARR14(2)  ------>MYB46(1)<---------ZAT2   --------->TOE1(3) <---------ICU4 --------->ICU4     <---------GLK1(2) --------->TOE1(2)--------->At4g35610    <---------AHL20(2)--------->AHL20(2)   cttcacagatttgtgaatcaaataacctacaaattacaacgtagctgcttaattagcttccttaattaatttcacactaattattaaatataaatattat  5350000                                                                            --------->HSFB2a(2)                                                                            <---------HSFB2a(2)    <-                                                                        --------->At4g35610        <-                                                                     --------->ZAT2                --                                                                     --------->At4g35610           <-                                                                     <---------ZAT2               ---                                                                     <---------At4g35610          ---                                                                   --------->ZAT18     <---------AtMYB61                  <-----------GT1                              --------->ICU4         --------->SPL7              <----------DOF2                             --------->ANAC55(2)      <---------ANAC58--              <---------DAG2                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       --- -----YAB1   <---------ANAC58                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <-------- >AHL20(1)   <---------ANAC58                 <---------ICU4<---------AHL20(2)     <---------ANAC58<- --YAB1   <--------P                       --------->YAB1 <---------ANAC55(2)  ---------->DOF2-------   gaataaaactaggttgctttatacctttcaaatttttgaatgtaatcaacatttcggagtatgtaattgtgagctgctcgagaaagcgtatggtcgtccc  5350100 ------>MYB46(1) ------>MYB83 --------MYB46(2)                               <---------LBD16 --------MYB55(2)                             <---------ARR14(2) ------->MYB46(3)             --------------->AGL15 --------MYB111(2)            <---------------AGL15                                         <-------- ------>ANAC58               ----------------->AG--------->HSFB2a(2)             <---------ALFIN1 ------>ANAC58               <-----------------AG<---------HSFB2a(2)      <------MYB46(1)  <--------- ------->AtMYB61             ----------------->AGL1                       <------MYB83     <--------- ------>ANAC46   <---------ANAC58             --------->ARR14(2)--------->TOE2(3)--------->REM1(1) -SPL7 <----------DOF2       <-----------------AGL1            ----------->GT1 ----------->RAV1(1) --------MYB111(1)      <-----------ARR10    <---------GLK1(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -->SPL7         <---------ANAC58       ---------->DOF2     <------ZmHOX2a(1)<-------TEIL --------->YAB1   accaaacttctttcaacttccctgcgagtctacctatttgggcaaaggtatctggaacatcaggaacgttatatgtaggtgcaacacctccatcgtcata  5350200                                                     <---------TGA1a                                                  ----------->HVH21                                                --------->O2                                                ==============================MYC_MYB                                                <---------ANAC46                                                <---------O2                                                --------->TGA1a<---------ARR14(2)                                                <---------TGA1a--------->ARR14(2)                                             --------->ANAC46--------->HSFC1(2)                 -----                                      ----------->GT1<---------ANAC46             xxxxxxxxxxxxxxxxxxx                                     <---------TOE2(3)       <---------HSFC1(2)  ------>ZmHOX2a(1)                                    ---------->DOF2  =========================MYC_MYB        <xxxxxxx     <------ZmHOX2a(1)              ======================bZIP_DOF    <-------GAMYB        xxxxxxxxxx  --------->HSFB2a(2)               ===========================bZIP_DOF         --------->TOE1(2) -YAB1       ==================================================bZIP_DOF         --------->TOE2(2) --TGA1      =============================================bZIP_DOF ------>ZmHOX2a(1)      <---------ETT(2) --HVH21     <----------DOF2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       ----------->RAV1(2)   gcatcgaggacgagtctttttggttctaacgcttggactaaagtaatacgacgtgaagtgagacgtttcctcggttaaacttcctgcgactatcgacccc  5350300  Previous    Next  AGI:  At2g12990.1    Description:  transposable element gene. CACTA-like transposase family (En/Spm), has a 9.4e-25 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like) Range:  from: 5349066    to: 5349776    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g13000.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 9.0e-151 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus) Range:  from: 5350022    to: 5353999    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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