Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <XXXXXXXXXXXXXXXXXXXXMIR170                                --------->AHL20(1)                                <---------AHL20(1)                                --------->AHL20(2)                                <---------ARR11(3)                                --------->ARR11(3)                      --------->YAB1                         <------NtERF2                              --------->ICU4                       <---------ANAC46 --------->RAP2.6(3)       ------->TEIL                     <-            <---------At4g35610 <---------AHL20(2)             --------->ANAC58                ------            --------->At4g35610--------->AHL20(2)              --------->ANAC58                <-----      --------->SPL7   <---------ATERF1(2)                --------->ANAC58    <---------At4g35610 ---    --------->LBD16    <---------RAP2.6(2)                --------->ANAC46  <---------RAP2.6(2)<-----   <---------ANAC58    --------->ATERF1(2) <---------At4g35610 <---------ANAC55(2)             ------   --------->ANAC55(2) <---------DEAR3(1)<---------RAP2.6(2)   --------->ANAC55(1)            <------   <---------ANAC58   <---------LBD16   <---------At5g28300    ----------->GT1--------->At4g35610<---  --------------->AtSPL3--------->RAP2.6(2)--------->At4g35610 --------->ANAC55(2)            xxxxxxx -----------GT1       --------->RAP2.6(3)<---------ANAC46 --------->ANAC58  --------->ANAC46  ------- -->GT1  <---------LBD16------>NtERF2  <-----------GT1--------->ANAC46 <---------YAB1       ---------   aatttccgtactacggctgagtttggcggcaaaatatattgttacggctgagttatacccaagacatgtaactattatacggctgagttgtcaagaatta  5215100                                           <------NtERF2                                          --------->LBD16                                         <---------ANAC58                                         <---------ANAC46                           <---------AHL20(1)                                         >>>>>>>>>>E2Fa                             <---------ARR11(3)                                         <---------ANAC58                           <---------AHL20(2)     <------ZmHOX2a(1)                  <<<<<<<<<E2Fd                               --------->AHL20(1)    <----------ID1                      <---------LBD16                             --------->ARR11(3) ---------->DOF2                --------->LBD16                                     --------->AHL20(2) --------AHL20(2)              <---------ANAC58                              <------NtERF2 -->ATHB1                      <---------ANAC46                             --------->RAP2.6(2) ---HAHB4                      <---------ANAC55(2)                          ------>NtERF2 ------>AHL20(2)               --------->ANAC55(2)                         <---------ANAC46 ----ICU4                      <---------ANAC58         --------->LBD16    <---------RAP2.6(2)  <---- --->ATHB51                 <---------ARR14(2)         <---------ANAC58    <---------ATERF1(2)  ----- ---YAB1                  <---------HSFB2a(1)          <---------ANAC58    <---------DEAR3(1) <------ ------YAB1              --------->DAG2 <<<<<<<<<E2Fc  <---------ANAC46    --------->ATERF1(2)<------ xxxxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC55(1)     --------->ANAC55(2)<---------LBD16  <---------MYB52(1) -->ICU4    ---------->DOF2 --------->ARR14(2)  --------->DAG2            --------->RAP2.6(3)-------- >YAB1 <-----------RAV1(2)--------->HSFB2a(1)  ---------->DOF2   <---------DEAR3(1)--------->AHL20(2)   ttaaaaaggacaggtaaaggaatgcgaaaggttccgtgttttggcgggaaaaagtttccgtgctacggctgtgtttggcggcaaaatatattcgttacgg  5215200                                                                                             --------                                                                                           <---------RAP2.6(2)                                                         --------->DAG2                 <---------SPL7                   <-----------GT1                     ---------->DOF2                 <-----------HVH21                --------->ANAC58                    --------->AHL20(2)              <---------ANAC58                <---------ANAC55(2)                 <---------AHL20(2)              <---------ANAC46           --------->ANAC58                        --------->AHL20(2)     --------->ANAC58 <---------ANAC46           --------->ANAC46    --------->At4g35610 <---------------AGL15  --------->ANAC46<---------At5g28300       --------->ANAC58      <---------RAP2.6(2)-------->ATHB1            --------->ANAC58--------->RAP2.6(3)       --------->ANAC58     <---------At5g28300 --------->ATHB51   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ANAC46     <---------LBD16     <---------ICU4     --------->ANAC58 <---------ANAC55(1) -----At4g35610 --------->ANAC55(1)             <--------HAHB4     --------->ANAC58 <---------ANAC58 ---->At4g35610 --------->ANAC55(2)            <---------YAB1    <<<<<<<<<WRKY18    --------->ANAC55(2) ---RAP2.6(2)   ----------->GT1<---------At4g35610<---------YAB1--------->WRKY18(1) <---------ANAC55(2) ---ANAC46 --------->ANAC58<-----------GT1     --------->ICU4 --------->ANAC58  xxxxxxxxxxxxxxxx>smallRNA(i) ->RAP2.6(3)    --------->ANAC58             --------->YAB1   --------->ANAC58--------->DAG2 <-------   ctgagttacacacaagacatgtaacaattttacggctgagttgtcaagaattattaaaaaaggcaagtcaaggaatacgaaaggttgcgtgttacggctg  5215300      <------NtERF2                         <---------RAP2.6(2)     ------>NtERF2                          <---------ANAC46                                   ------    --------->ETT(2)                       --------->RAP2.6(3)                               --------    <----------ID1                        --------->MYB52(1)                                ---------    <---------ETT(2)            <---------AHL20(2)                                        <---------MYB52(2) ->At4g35610                    --------->AHL20(2)          --------->AHL20(2)      <-----------GT1 --At4g35610     ------>ZmHOX2a(1)   <-----------GT1        --------->YAB1        <----------DOF2   agtttggcgacaaatcgtccttgttatggctgatttaaatcacattacggctaagttgtcaataaaaacatgaagttcaattcgatttactgactaaccg  5215400              ------>NtERF2             --------->LBD16            --------->ANAC46                                               <xxxxxxxxxxxxxxxxsmallRNA(s)         --------->ARR14(2)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <-----------GT1                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    ---         <---------ARR14(2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <----       ----------->ARR10                            <---------GLK1(2)    ----------->GT1       ------ ->GAMYB<---------CCA1(2)                       --------->RAP2.6(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) >P----------->GT1          ----------->GT1 --------->YAB1        ----------->RAV1(1)   --------->MYB52(1) >MYB52(1) <---------LBD16  <---------MYB46(3) --------->MYB52(1)--------->ANAC46   <xxxxxxxxxxxxxxxx   aggtatggttatatccggcccaattaccagcggtttaatacacctataaaaacggcttctcccataaacaccagaaggctaaactcgcacaaacagaagc  5215500                                                                     <---------ANAC46       <--------                   --------->AHL20(2)                              ------>NtERF2          <---------ANAC58          --------->AHL20(1)              <-----------GT1        --------->LBD16          <---------ANAC58          <---------ARR11(3)          --------->GLK1(1)          ------>NtERF2        <---------ANAC58          <---------AHL20(1)      --------->ANAC58              --------->ANAC46      <---------ANAC58 ------>MYB52(1)   <---------AHL20(2)<---------GLK1(2)         <---------LBD16 --------->AtLEC2 -----MYB52(2)   <----------DOF2xxxxxxxxxxxxxxxx>smallRNA(s)  <---------ATERF1(1)--------->YAB1 --->At4g35610   --------->TOE2(3)--------->ANAC58        ------>NtERF2      <---------ANAC58 xxxxxxxsmallRNA(fl3)        --------->MYB46(3)*TSS     --------->RAP2.6(3)  <---------ANAC58   taacgagttcaaaatatttctttaattttcaacgactcggaatttcaccatgggttacgacggcctccgcgacttgaatccttgcataacttgctggacg  5215600                                                                                          <------ZmHOX2a(2)                                                                                         --------->ARR11(3)                            <---------ANAC46                                             --------->ARR14(2)                       --------->ANAC55(2)                                      <------MYB46(1)                       <---------ANAC55(2)                        <----------DOF2        <---------ARR14(2)                      <-------TEIL                      --------->MYB52(1)      <------MYB83                  <---------------AtSPL3                <---------LBD16    --------->ATHB12------>ZmHOX2a(2)                  <---------------AtSPL8             xxxxxxxxxxxxxxxx>smallRNA(s)        <---------ARR11(3) -SPL7           <------ZmHOX2a(1)<---------YAB1   xxxxxxxxxxxxxxxx>smallRNA(s)<---------MYB46(3)   atttgtgttctggttcttaggaagtacgtctcgtttatcacagataactcattcgaactacgggtcgtctttgtcgatgagtgggtaatgggatcttcac  5215700                                                                           --------->ARR14(2)              --------->ANAC55(2)                                          <---------ARR14(2)       --------->ANAC58                                           <---------YAB1       --------->ANAC58       ---------->ID1              <-----------RAV1(1)       --------->ANAC46   <---------ANAC58           >>>>>>>>>>>>>>>>>LFY --------->GLK1(1) ---------   --------->CCA1(2)      <---------ANAC58         --------->MYB46(3)     <---------GLK1(1)<---------YAB1   tcgtgatacaaggcatacttaaccttgtgcttgtcttattccctataaactcaccctccaatgttgttttcatagggtatccaaattgaagctataatcg  5215800                                                 --------->ANAC58                             <---------ANAC58    --------->ANAC58                             <---------ANAC58  ---------->DOF2                      --------->ANAC58   <---------ICU4               --------->TOE2(3)         -------->ATHB1             <-----------HVH21               -   <---------DEAR3(2) --------->ANAC58   --------->ATHB12       <---------AtMYB61                  <-   <------MYB46(1)    --------->ANAC46  <---------YAB1 --------->YAB1                              <-   <------MYB83xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------GLK1(1)                              -- >YAB1        --------->ANAC46         --------->GLK1(2)     <----------DOF2                   <-----   gaagtcggttttctcaacgttactacgacatgcttgaagagaatcattggaaagaaatcagaacttttggtgtcatcgaaaactgtggttttgtccgatc  5215900               --------->ATHB12            <---------ANAC55(2)    ----------->RAV1(1)   ------->GAMYB -------->P<-------TEIL                                                                   <----------DOF2 --------->ANAC46                                                                        <---------DAG2 --------->ANAC58                                                                     <---------ALFIN1 --------->ANAC58                 <---------At4g35610                               <-----------GT1 ------>GAMYB <---------YAB1 ------->TEIL                                          <-------TEIL --------MYB111(2)        <---------YAB1           <---------ETT(1)              <---------GLK1(2) --------MYB55(2)      <-------TEIL    ----------->GT1                           --------->ARR14(2) ------->MYB46(3)<---------WOX13(1)   <---------TOE2(3)                          <---------ARR14(2) - -ZmHOX2a(2)--------->ANAC55(2)   --------->At4g35610    --------->MYB52(1) <-----------GT1   <------   aacaacccacaaatacatgattgagttcatgaatgcaactgaggtaactcattccgacccaagggaaactgtattatttaacagattcacaccttttgac  5216000  Previous    Next  AGI:  At2g12710.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 5215547    to: 5216561    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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