Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   <-                                                 <--------P           <------ZmHOX2a(2)         -----                                             ------>ZmHOX2a(2)       --------->ARR14(2)        <-----                                            <------ZmHOX2a(2)        <---------ARR14(2)       -------                                           --------->ARR11(3)    <------ZmHOX2a(2)        --------->SPL7                                           --------->ARR14(2)   --------->ARR14(2)      ----------->HVH21                                      --------->GLK1(2)         <---------ARR14(2)      <---------SPL7                                      <---------ARR14(2)  ------>ZmHOX2a(2)          <-----------HVH21                        <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------ARR14(2)          ------>ZmHOX2a(2)                       --------->SPL7 ------->TEIL--------->ETT(2)------>ZmHOX2a(2)<------ZmHOX2a(2)                    <---------HSFB2a(1)    <---------ARR14(2) <---------DEAR3(2)  --------->ARR14(2)                --------->ETT(2)      --------->ARR14(2)--------->ARR14(2)        <---------ARR14(2)<               <--------P         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)------>ZmHOX2a(2)<xxxxxxxxxxxx    <------ZmHOX2a(1) <---------MYB52(1)   <---------AGP1<------ZmHOX2a(2)       <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------ARR14(1) <---------TOE1(2)  xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------CCA1(2)<-----------HVH21----------->HVH21 <------   tgtagaggatggagagggtagaccgttcgtcttagagacgaatcggatctggtagaccgatcgtcggatcggatcggccagaccgatcgtcggacggatc  5113700                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                              <-------GAMYB                                             <---------DEAR3(2)                                             <---------SPL7       ----------->HVH21       --------->MYB52(1)                    <---------MYB46(3) --------->At4g35610 ------->ARR14(2)                         <-----------HVH21   ------>ZmHOX2a(2)                  <--- --------ARR14(2) <------ZmHOX2a(2) ----------->HVH21        <------ZmHOX2a(2)                  <---- ->ZmHOX2a(2) ------>ZmHOX2a(2)     <---------SPL7          --------->ARR14(2)  <------MYB46(1) <---- -ZmHOX2a(2) <------ZmHOX2a(2)    --------->At4g35610       <---------ARR14(2)  <------MYB83    <---- -->ARR14(2)--------->ARR14(2) <---------ATHB12<xxxxxxxxxxxxxxxxsmallRNA(i)   <--------P     <------- ------ZmHOX2a(2)<---------ARR14(2)--------->TOE2(1)    <xxxxxxxxxxxxxxxxsmallRNA(s)        ------>ZmHOX2a(2) xxxxsmallRNA(i) --------->ARR14(2)--------->TOE1(1) xxxxxxxxxxxxxxxx>smallRNA(s)       <---------HSFB2a(1) ---ARR14(2)<---------ARR14(2) <------ZmHOX2a(2)  ----------->HVH21     --------->MYB52(1) <------ZmHOX2a(2)   ggatcagccagacggatcggatcagatagaccgatcatcggacgggtcggatgggacaggccgatcgtctgacagaacgggttggacagaacgatcgtcg  5113800                                                                                          ---------->DOF2                                                                                      ---------------                                                                   <------NtERF2      --------->ZAT6                          <------ZmHOX2a(1)                     --------->ATERF1(1)   <--------------                       <---------HSFB2a(2)                     <-----------HVH21     <---------------                       --------->HSFB2a(2)                 --------->MYB52(1)        <---------------         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) ----GAMYB   ---------->DOF2                             <xxxxxxxxxxxxxxxxsmallRNA(s)---------------- -----MYB46(3)    --------->ALFIN1                      --------->ANAC46             <--------------- -----DEAR3(2) --------->DAG2              <-------TEIL --------->ANAC58             ---------------- -----SPL7--------->HSFB2a(2)       --------->YAB1      --------->ANAC58            -------->P<------ ----HVH21<---------HSFB2a(2)    ---------->DOF2    <---------ALFIN1             --------->YAB1   ---   gatgggatagatcgagaaaggtgttcgaggaagcacaaagataagtgcatccaaacacacccaagggtcgcccatggatgcaatcttaccagtaaaggga  5113900                                                        <---------ATERF1(1)                                                        ------>NtERF2                                                        <------NtERF2                                                        <---------RAP2.6(3)                                                       --------->RAP2.6(2)                                                       --------->RAP2.3(2)                                                       --------->DEAR3(1)                                                      --------->SPL7                                                      --------->ATERF1(1)                                                      --------->RAP2.3(1)                                                     <---------DREB2C(1)                                                     <---------ATERF1(1)                                                     ------>NtERF2                                                     <------NtERF2                                                     --------->ATERF1(1) >AGL15                                              --------->DREB2C(1) -AGL15                                             <---------ATERF1(1)        <---------At4g35610 --AGL2                                             --------->DEAR3(1)         --------->At4g35610 --AG                         <-----------GT1      <---------RAP2.6(2)      ========================= ->AGL1                --------->ANAC55(2)        <---------LBD16           ------>ZmHOX2a(1) --AGL1            <------ZmHOX2a(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ZAT2 ->AGL3            ==============================HOX2a_HOX2a      ------->TEIL --------->ZAT2       - ----ID1 --------->YAB1<---------ANAC55(2)<------ZmHOX2a(2)      <---------CCA1(2)  ----------->GT1 < ------->DOF2    <---------TOE2(3)      <------ZmHOX2a(1)<------NtERF2      =========================   gaaagcttcaagaatgagtaaggaaacgtgattcaccatataggatcaatatcgcggccgccttcatgtatctatctcctcagctatggtgaaactgatc  5114000               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              --------->MYB52(1)                  --------->ANAC46             ---------->DOF2         ------>MYB46(1)            --------->AtMYB61        ------>MYB83 --------->ANAC58       --------->SPL7               --------->MYB52(1)      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------WRKY12                        <---------MYB52(1)     xxxxxxxxxxxxxxxx>smallRNA(i)  --------->TOE1(2)                                  <-----------HVH21     xxxxxxxxxxxxxxxx>smallRNA(s)  ------->GAMYB  --------->ANAC58                    --------->LBD16    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ZAT18                       <---------ANAC55(2)    xxxxxxxxxxxxxxxx>smallRNA(i)   --------->TOE2(2)                                 --------->TGA1a   ------>ZmHOX2a(2)              <---------MYB52(2)                                 --------->O2  <------ZmHOX2a(2)      --------->MYB52(1)    <---------WRKY38(1)                   <---------O2 ---  <---------------------WRI1   --------->GLK1(1) <---------LBD16                     ================ =========HOX2a_HOX2a   ----------->HVH21 ---------->DOF2                            <---------TGA1a -------->GLK1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  *TSS                <-----------RAV1(1)  xxxx ---------GLK1(1)----------->GT1  --------->MYB46(3)--------->At5g28300     <---------MYB46(3)  ----- ========HOX2a_HOX2a <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->MYB52(1)   <------ZmHOX2a(1)   agagatcggtaagaccaaagggtgactcgacggataaccaacgagaaagtccacggtagaaaccgatggacaaaacggatgttggacccgtgaggaaacc  5114100                                                                   <---------ANAC58                                                                   <---------ANAC58                                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                          ----------->HVH21                 ------>ZmHOX2a(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->ANAC58                  <------ZmHOX2a(2)      --------->ANAC58                                  <---------LBD16                   <---------ARR14(2)      --------->ANAC58                               <<<<<<<<<GATA-3            --------->CCA1(2)     <------NtERF2                                   <<<<<<<<<GATA-1           --------->ARR11(3)    --------->MYB52(1)                               <<<<<<<<<GATA-4          =======================    <---------ATERF1(1)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ARR14(2)    ------>NtERF2--------->GLK1(1)            <---------MYB46(3)   <---------ANAC46     <xxxxxxxxxxxx   --------->DEAR3(1)                    ------>ZmHOX2a(2)--------->DEAR3(1)  =====================HOX2a_HOX2a   ----------->HVH21           --------->TOE1(2)     <<<<<<<<<GATA-2          ====================HOX2a_HOX2a  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ARR14(2)--------->ANAC46     <------ZmHOX2a(1) ------->DOF2  =================================HOX2a_HOX2a ------->TEIL    <---------TOE1(3) ========bZIP_DOF<---------GLK1(1)     <---------ARR14(2)--------->ANAC58   <---------TOE2(3)<------- xxxxxxxxxxxx>smallRNA(s)      --------->TOE2(2)    --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---->TOE2(2)  <------ZmHOX2a(1) --------->SPL7     ------->TEIL<---------MYB52(1)   xxxxxxxxxxxxxxxx   taaggccgacggaagaaggatttcatgggctagcctacgatgatccgatggatgaatccacggacccttgggtgtgataaggatatagttcggatcgtat  5114200                                                      <--------P                                            ----------->GT1                                          --------->SPL7               <-------GAMYB                                         --------->MYB52(1)           <---------MYB46(3)                    <----------DOF2     <---------SPL7<---------MYB52(1)                   ------>ZmHOX2a(2)                    <---------DAG2      ----------->HVH21         <---------DEAR3(1)      <------ZmHOX2a(2)     ------>ZmHOX2a(2)       --------->AtMYB61       --------->At5g28300            --------->MYB52(1) ===========HOX2a_HOX2a     --------->MYB46(3)      ----------->GT1  <---------DEAR3(1)  <---------ARR14(2) xxxxsmallRNA(i)   xxxxxxxxxxxxxxxx>smallRNA(s)  ------------>MYB.PH3(1)        <---------DOF5.7(2) --SPL7        ---------->DOF2----------->RAV1(1)--------->MYB52(1)  <---------RAP2.6(2) --------->ARR14(2) xxxxxxx>smallRNA(s2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ALFIN1 --------->MYB46(3)<   ggatggatcgataagccgaaagctttatcgaccaccatagaccggacggataaacggttagtaaaccgtgggcggtcgtagtaaacgaccggatcggaaa  5114300                 --------->MYB52(1)             --------->ANAC58                                   <------ZmHOX2a(1)             --------->ANAC58                                  <---------SPL7         <---------HSFB2a(2)                          ------->TEIL     xxxxxxxxxxxxxxxx>smallRNA(s)                     <---------TOE1(2)    --------->HSFC1(2)                                <---------TOE2(2)                     ---------    <------MYB46(1)                                   <-------TEIL                     <---------ARR11(3)    <---------MYB46(3)                                --------->SPL7                   --------->ARR11(3)    <---------HSFC1(2)                              <---------SPL7              --------->ANAC46    --------->HSFB2a(1)    <---------ATHB12        <---------ANAC46             --------->ANAC58    <---------HSFB2a(1)<-------TEIL                <---------ANAC58             --------->ANAC58    <------MYB83xxxxxxxxxxxxxxxx>smallRNA(i)       <---------ANAC58           ---------->DOF2 xxxxxxxxxxxxxxxxsmallRNA(i)                      <---------------AtSPL3      <---------ATHB12    ---   catggatggttcgataagccaagggttcaatcgtccaccatggaatcgaaggggcgtacgtttggaggacggatggaccaataagccaagagcttgattc  5114400                                                                     <---------ANAC46                                                                     <-------GAMYB                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                    <---------MYB46(3)                                                                    --------->MYB52(2)                                                                    <------MYB83                                                                    <------MYB46(1)                                                                    --------->MYB55(2)                                                                   <---------AtMYB61                                                                   --------->MYB111(1)                                                                   <---------MYB46(3)                          <------ZmHOX2a(2)                       <--------P                         --------->ARR14(2)                      <-------GAMYB                         <---------ARR14(2)                      <---------ANAC58                      --------->SPL7                             <---------ANAC58                      <---------TOE2(2)                         --------->ATHB12                      <---------TOE1(2)                         <---------DEAR3(2)                    --------->TOE1(2)                           <------MYB83                  <---------------AtSPL8                        --------->MYB55(2)                <---------GLK1(1)                               <---------MYB46(3)            --------->ANAC58                                    --------->MYB52(2)    <---------YAB1          --------->TOE1(2)                                    <---------MYB46(3)    xxxxxxxxxxxxxxxx         --------->MYB46(3)                                    --------->MYB111(1)  --------->MYB52(1)      <xxxxxxxxxxxxxxxxsmallRNA(s)                             <---------AtMYB61  <---------MYB52(2)   --------->YAB1 --------------->AtSPL3                      <--------P <---------AtLEC2        <---   <---------ICU4 --------------->AtSPL8                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <  --------->ICU4--------->GLK1(1)                            <-------GAMYB       --------->ANAC58<---  <---------ATHB12<---------------AtSPL3                    <---------ANAC46     --------->ANAC58<--- <---------RAP2.6(3)<---------SPL7                       --------->ALFIN1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) >ATHB12------->TEIL--------->TOE2(2)     <---------------AtSPL8<------MYB46(1) <xxxxxxxxxxxxxxxxxxxx --->NtERF2 --------->ANAC58            <-----------RAV1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<----   ggccatcatgaaccaaggaaatcgtacgatccccaatctctattgttgtacttagaccagtggggttggttggttgtatggctaagtaacgatagggatt  5114500                                                    --------->MYB52(1)                                                  --------->MYB46(3)                                                  <---------MYB52(2)                               ==                                                 <------NtERF2                                     <-                                                ----------->RAV1(1)       --------->LBD16     <------ >smallRNA(s)                --------->WRKY12   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<------NtERF2--- ------MYB46(3)         ------->TEIL            ------>NtERF2           <---------LBD16      <xxxxxxx -------TEIL   ================================HOX2a_HOX2a            --------->ARR14(2)   <---------ANAC55(2) ---MYB46(1)   ------>ZmHOX2a(2)               <----------ID1         <---------ARR14(2)   --------->ANAC55(2) ---MYB83     <------ZmHOX2a(2)             --------->DAG2     <------ZmHOX2a(1)    <---------TOE1(1) xxxsmallRNA(se3)    --------->ANAC46   <------ZmHOX2a(1)    <---------TOE1(3)<---------ARR14(2)  <-- -----AtMYB61 =================================HOX2a_HOX2a   <---------TOE2(3)--------->ARR14(2) ----   ggttcatcgattcacgatcgcatacgaatcgttgaacaaataggataaggcgacaaacgggctaaggaatcaaatccgcatattggccgaggtatgtaac  5114600  Previous    Next  AGI:  At2g12530.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 5113760    to: 5114056    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version