Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------TOE2(3)                     <----------DOF2             <------MYB46(1)          <---------GLK1(1)             <------MYB83<---------TOE1(3)           <---------ANAC46            --------->MYB46(2)   ----------->GT1   --------->ZAT14            --------->MYB59<------ZmHOX2a(1)       --------->ZAT18          <---------MYB52(1)  ---------->DOF2      <---------ZAT14                             <-----   ggttcaatgccagtttggtattggtttaaggagaaaggagaaatcggtttgagttcagtagaagattgaagagactctcttggtattagagggtttgact  5081100                                                                                        --------->At4g35610                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                 --------->ARR11(3)                                               --------->HSFB2a(1)               <---------ARR11(3)                                               <---------HSFB2a(1)               <---------ARR14(2)                                        ----------->RAV1(1)                      --------->ARR14(3)                                  <---------MYB46(3)                             <---------ARR14(3)                                  <-----------RAV1(1)                        --------->ZAT6                                  --------->MYB52(2)            <----------DOF2  --------->ARR14(2)         <---------YAB1     <----------DOF2------->GAMYB--------->TOE2(3)  <-----------GT1 <---------LBD16 ----ANAC46           <<<<<<<<<TBF1<-------GAMYB     <---------CCA1(2)<----------DOF2   <---------At4g35610   tggactctgttataaatagtcttcttcttcctttgtttgttgcaacagaaaattcttatctcaattcttttcctttgtaacacgatcttgagctctgggt  5081200                                                       <---------REM1(1)                                                   <-----------RAV1(2)                                                  <------NtERF2                                                  ----------------->AGL3                                                --------->PCF2                ------>ZmHOX2a(2)                                               ------>NtERF2                <---------ARR11(3)                                            <---------LBD16  <---------ARR11(3)                                          --------->ARR14(2)=========================HOX2a_HOX2a                                 <---------ANAC58------>NtERF2<------ZmHOX2a(2)                              <---------WOX13(1)<---------TCP20--------->YAB1--------->At4g35610                     --------->YAB1       <---------ARR14(2)<------ZmHOX2a(1)<---------At4g35610                    <-------TEIL <---------ANAC58----------->RAV1(1)     <---------MYB52(1)       <--            --------->ICU4   <---------ANAC58 --------->LBD16--------->ARR11(3)----------->HVH21  <--       ----------->GT1       <---------ANAC58 <---------ATERF1(1)       --------->LBD16           <--   tttgagcttgagtaaatattgattcatagtggattgctggattgaatccggccccagatgtaggatcatcacaccggtgatctgaactgggtaaacaatt  5081300             --------->MYB52(2)                       --------->LBD16           <---------MYB52(1)                       <---------LBD16         <---------ANAC58                        <---------ZAT14                      <---------WOX13(1)         <---------ANAC58                       <---------ZAT6                       <------------CBF      <---------MYB52(1)                      <---------ANAC58                      --------->ATHB12    --------->MYB52(2)                        <---------ANAC58                     <---------YAB1 -------ANAC58                                <---------ANAC46   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------ANAC58                         xxxxxxxxxxxxxxxx>smallRNA(i)              <---------ANAC46 -------ANAC46<----------DOF2       ------>ZmHOX2a(2)<---------ANAC46  ------>ZmHOX2a(2)           <-   gtgtgttcgtttcgttctttgtttgattatgttcttgatcgatctattgagtgttccgcgaattgaagcttgatcgagttgtgttgtgattgaatcgagt  5081400                                      <------MYB46(1)                                    <---------WOX13(1)                                   <------------CBF                         <------------CBF                   <---------AHL20(2)                     <---------At4g35610                  <----------DOF2         <---------ZAT18            <----------DOF2        <XXXXXXXXXXXXXXXXXXXXMIR845A                   --------->ZAT18           ------>ZmHOX2a(2)       <---------GLK1(2)    <-------TEIL         ---------->DOF2         --------->ARR11(3)      <XXXXXXXXXXXXXXXXXXXXXMIR845B    *TSS    --------->ANAC58          -         <---------ARR11(3)   <-----------GT1       <---------TOE1(3)     --------->ANAC58    <------ --------ANAC46    <---------WRKY38(1)<------MYB83  <---------TOE2(3)----------->HVH21        <------   tgtgttgaatcgatctttgagtcatcggattgtaacagattggtatcagagcctaaggttctttaatggcgatgacgagcaaagcgaacttgaattcagg  5081500                                                                                        ---------->DOF2                                                                                <---------ANAC58                                                                           <---------ANAC58                                                             ---------->DOF2    <---------ANAC58 --------->DOF2       <---------DOF5.7(2)              --------->ANAC58    <---------ANAC58        -- ---TOE1(3)         --------->DOF5.7(2)                --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---TOE2(3)        <----------DOF2                <----------ARF1   <-----------ARR10 <----------DOF2   tttaaaggcttcgtttcaagtctttaacgagaactcagacttctcgctatggaagacaaggatgaaagcacatctcggcttggctgggcttaaaggagtg  5081600                                                                          <---------WOX13(1)                                                                       <---------YAB1                                                                       --------->ICU4                                      --------->DAG2                 --------->YAB1                                     ---------->DOF2                --------->ICU4                  <                             --------->LBD16                        <---------YAB1   --------->YAB1 -                             --------->At4g35610               <------MYB46(1)       <---------ICU4 -               <---------TOE2(3)  --------->ANAC58          <------ZmHOX2a(1)  --------->YAB1      ==              >>>>>>>>>WRKY18<---------At4g35610            =========================HOX2a_HOX2a   <-   --------->ATHB12         <---------ANAC46   ---------->DOF2 <------MYB83   <------ZmHOX2a(2)  <--- ---->ZmHOX2a(2)  ---------->DOF2 --------->ANAC58        <---------TOE2(3)   =======================   atcgatgatttcacattgacgaaagttgttccgcttacgaaaagtgaaggaaagaaggttgaggaaggtgatgatgatggatcatagtcatcacagacta  5081700           ------>ZmHOX2a(2)         <---------ARR11(3)         --------->ARR11(3)      <---------MYB59     ----------------->AGL1     ----------->RAV1(2)                            <---------ICU4    --------->MYB52(1)                             --------->ICU4    ------->TEIL                          --------->ICU4         <---------MYB46(3) ---------------AtSPL8                    <---------ATHB12       <------MYB83 -------------->AtSPL3     --------->GLK1(1)       <---------YAB1<------MYB46(1) -------------->AtSPL8     <---------GLK1(1)    <---------YAB1  <---------DEAR3(1)          <-------- =================HOX2a_HOX2a --------->YAB1 ------->TEIL    <---------TGA1a               --------->MYB46(3) -----ZmHOX2a(1)      ----------->GT1--------->ANAC46        --------->O2         <------ZmHOX2a(1) ------TOE2(3)  ---------->DOF2      --------->ANAC58        <---------O2        ----------->GT1 =====HOX2a_HOX2a --------->ICU4     --------->ANAC58        --------->TGA1a    <---------TOE2(3)   aggaagtacctgatcttgtaaagatggagaaatcagaacaagcaatgaatgtgattatcgctcacgttggtgatgttgttctgaggaaaattgaccactg  5081800                --------->ALFIN1              --------->ALFIN1                         ----------------->AGL1       <---------ZAT14                        --------->HSFC1(2)       --------->ZAT14                --------->ARR14(2)       --------->At4g35610         --------------->AGL15       <---------At4g35610         <---------------AGL15    <---------At4g35610           <-----------------AGL2    --------->ZAT2                <-----------------AGL3  ------>MYB46(1)    <---------ZAT2   --------->GLK1(1)<---------ARR14(2)<---------MYB59    --------->At4g35610 --------->TOE2(3)     <---------HSFC1(2)                     <-----------GT1   <-----------RAV1(1)  --------->TOE1(3) ----------->GT1 ------>MYB83     <---------At4g35610 -ALFIN1      <---------O2       --------->At4g35610--------->DOF5.7(2)    --------->At4g35610    <--   caagtctgctgcagagatgtgggaaaccttgaataagctgtatatggaaacatcgttaccaaatcgaatatatgtgcagcttaagttttactcattcaag  5081900                                                                                 --------->At4g35610                                                                                 <------MYB46(1)                                                                                 <------MYB83<-------                                                                                --------->MYB111(2)                                                                                --------->MYB55(2)                                                                                --------->MYB46(2)                         --------->GLK1(2)                                      <---------MYB46(3)                 --------->AHL20(2)                                             --------->MYB111(1)                 <---------AHL20(2)                                            <---------MYB55(1)                <---------ATHB12                                               <--------P    <------- <---------WOX13(1)  --------->YAB1          --------->ARR11(3)             <---------TOE2(3)<------- -------YAB1  --------->WOX13(1)             <---------ARR11(3)          --------->GLK1(2)  <-------TEIL   atgaatgacacaatgtcaattaatgagaatgtgaatgaattcttgaagatagttgtcgagctaagcagtcttgagattgtggtaggtgaagaagttcgtg  5082000  Previous    Next  AGI:  At2g12490.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 5081466    to: 5086728    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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