Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->ICU4                                                         <---------YAB1                                                         <---------AHL20(2)                                                         --------->AHL20(2)                                                        --------->AHL20(2)                                                        <---------AHL20(2)                                                       --------->YAB1                           <----                                                --------->ANAC58         <---------ANAC46       <----              <---------YAB1                    --------->ANAC58       <---------ANAC46      <------- -----------GT1        --------->YAB1        <---------ATHB12<---------ICU4               ------>ZmHOX2a(2)   tatttcgatatttgttatgatgtaatcaaaatactaactccagtttaatcaagctaattttaattagtaggggttgtgtatttcaatctcgatctctttt  5075500                                                       <---------ARR14(2)                                                       --------->ARR14(2)                                                      <---------CCA1(2)                                                    --------->ANAC55(2)                                                    <---------ANAC55(2)                                                   <-------TEIL                                                 <---------ARR14(2)                                                 --------->ARR14(2)                                              ------->GAMYB   <---------WOX13(1)                       -------->P<XXXXXXXXXXXXXXXXXXXXMIR420 --------->ATHB12               ----------->GT1--------->LBD16 -----YAB1                   <---------ATHB12<---------LBD16              <---------ANAC58       <--- -----AHL20(2)      <---------ATHB12      --------->ETT(2)                <---------ANAC58       <--- ---DOF2----------->GT1------->TEIL     <-----------HVH21          <---------GLK1(2)       ----------   tattgattgatggtcaaaaccaatgaatcaaatgatgttatttgtcaaccggatacatatctgtgattagattatttcgtcttagacttacaacaacatt  5075600                               ---------->DOF2                             --------->AHL20(2)                                                    <-     --------->At4g35610     <---------AHL20(2)                                                    <- <---------MYB46(3)          --------->YAB1                                 <----------DOF2       --- <------MYB46(1)          --------->YAB1 <---------At4g35610             <---------ALFIN1      <----- <------MYB83            <---------AHL20(2)                             <---------ZAT18        ------ ------MYB46(3)         --------->AHL20(2)     --------->ANAC46     <------NtERF2              ------ --------RAV1(1)   <---------At5g28300   --------->At4g35610     <------NtERF2                 <----- ->RAV1(1)        <-----------GT1   <----------DOF2            --------->ANAC46           --------->WOX13(1)   tgttggtagcagtatcacatttaccatataataaaaagcttttagctccacaaaacctctcgcatgcggcatcgtccactttgggtttttgacaatcagc  5075700                                                          --------->ANAC58                                                          --------->ANAC58                                                     -------->ATHB1     <---------TOE1(2)                               <---------ICU4 -----MYB46(1)                     <---------ALFIN1  --------->ATHB12     --------->YAB1 -----MYB83                       -------->P         --------->YAB1       <---------ICU4 ------>MYB59                     ------>MYB83       <--------HAHB4      <---------ATHB12 ----ZAT2                         ------>MYB46(1)   --------->ICU4       --------->ICU4 --->At4g35610                  --------->AtMYB61  --------->GLK1(2)<-----------GT1  --------->CCA1(2) --->ZAT2                <---------WOX13(1)       --------->YAB1    --------->YAB1 <------ZmHOX2a(1) ----At4g35610         --------->ATHB12   --------->AHL20(2)     --------->YAB1   ----------->GT1   taggtcgtagcattttgcatactcttgatttataccaacacctattaaacaagaatcattaagccaatattcacaatcatggaaaggatacaaaaacata  5075800                                                                            <-------TEIL<---------ARR14(2)                                                                           --------->ARR14(1)                                                                           --------->CCA1(2)                                                                          --------->ARR11(1)                                                                          --------->ARR11(3)               --------->DAG2  --------->YAB1                             --------->ARR14(2)    <----             ---------->DOF2  <---------YAB1      <---------ARR11(3)      <---------ARR14(2)   <-----     <---------AHL20(2)     --------->YAB1  --------->HSFB2a(2)       ---------->DOF2   --------->ARR14(2)     --------->AHL20(2)    <---------YAB1   <---------HSFB2a(2) <---------ATHB12       <------ZmHOX2a(1)   tgcatatttaaacaaaaaaggtgagtagtatgataataagctaataccagaagttctatcggagcaatgaacaaaagatacggctaagaggatagtgagg  5075900                 <---------ANAC58      <-------GAMYB   <---------YAB1                          <---------AHL20(2)              <------     <---------MYB46(3)                             <---------ANAC58                    ------>ZmHOX2a(2)     ----------->GT1 <---------ANAC46               <---------ANAC58                  <-----------ARR10 --ZmHOX2a(1)    <---------ANAC58          --------->YAB1    <---------YAB1           <---------ARR11(3) -----ID1 <---------TOE2(3)               <---------YAB1    <---------AHL20(2)        --------->ARR11(3)   acaaatgtggttaacattttcttgctgatagccattttgtttctatgattttttgcttctatttttattttgagttttgtaatagactgatcttcgcttt  5076000                                                      <---------RVE1(1)                                                      <---------CCA1(1)                                                     --------->ARR11(3)                                                     <---------ARR11(3)                                         ------>MYB83--------->AHL20(1)                                    --------->ZAT6   <---------AHL20(1)                     <--------                               --------->YAB1    ---------->DOF2                            ---------                              <---------YAB1   <---------MYB59                             --------->AHL20(2)                          <---------AHL20(2)   --------->TOE2(3)                 <---------ARR14(2)<-                        <-----------TBP  ------>MYB46(1)  <---------AHL20(2)     --------->ARR14(2)<-                      --------->AHL20(2)----------->RAV1(1)          ---------->DOF2   <---------ARR11(3) ----DOF2             <-----------TBP  --------->AtMYB61  --------->AHL20(2)     --------->ARR11(3)--   gtttttctcatgtactacatatgtttatatatatgataacaccaacatacctaaagatatttattttttgtaaaagagaaacaaatcttgatatttaatt  5076100                                                         <---------ANAC58                                                         <---------YAB1                                                         <---------ANAC58                                                       <-----------GT1                                                    <---------ICU4                                                   --------->AHL20(2)                                                   <---------AHL20(2)                                                   <---------YAB1                                                  <---------AHL20(1)                                                  --------->AHL20(1)                                                  --------->AHL20(2)                                                 --------->YAB1                                               ------>MYB83                                             <---------MYB59                                            <---------ANAC55(2)                                     <                                            --------->ANAC55(2)                                     - -AHL20(2)    --------->YAB1              <-----------GT1<---------ANAC46                         <-- >AHL20(2) --------->YAB1       <---------WOX13(1)<---------AHL20(2)     <---------YAB1        ------ --------ANAC58          ---------->DOF2<---------ANAC58 <---------ANAC55(1)                   <----- --------ANAC58     --------->AHL20(2)  <---------ANAC58 <---------ANAC55(2)                   <----- ------->TOE2(3)---------->DOF2<------------CBF------>MYB46(1)      ------->TEIL               ------   tccttgatttctataatcaaaagaaaataaagagattgattttcttacctaatataattacgtttgaatgtatatatgatacacttgtctaatgtgatat  5076200                                                                                                -----                                                                                      <--------------                                                                                      ===============                                                                                      --------->HSFB2a(2)                                                                                      <---------HSFB2a(2)                                                       --------->TOE2(3)              ---------------           ----------->GT1                             <----------DOF2               ================         <------------CBF                              --------->TOE1(3)             ================      --------->ANAC55(2)                  ----------->GT1                           <---------------    <-----------GT1                    <---------ARR11(3)                       <---------TOE1(3) ---------AHL20(2)                  --------------->AGL15                  <---------ZAT6--------->AHL20(2) -------->AHL20(2)                  <---------------AGL15                 <---------TOE2(3)    <----- -------AHL20(2)                    ================================================================= --->ARR11(3)                       ================================================================= ----ARR11(3)                       ================================================================= ----AHL20(1)          --------->DAG2  --------->GLK1(2)            ------>ZmHOX2a(1)---------------- --->AHL20(1)         ---------->DOF2  --------->ARR11(3) --------->AHL20(2)    <---------TOE2(3)   atttttttacatattgttaaaacataaagttgtttttccaaaatctagtaaaaaaaactttaaaatagtccttactaatgttaaggttctataaattgaa  5076300   =============================MADS_MADS   --------------->AGL15   <---------------AGL15  ----------------->AGL3  ===============================MADS_MADS -------->P        --------->AHL20(2) ------>MYB83   <---------------AGL15 ------>MYB46(1)--------------->AGL15  --------->YAB1 -->TEIL        --------->HSFB2a(2)    <------ZmHOX2a(1) -AGL15         <---------HSFB2a(2)  <---------TOE2(3) ==================MADS_MADS      <---------AHL20(2) >AGL15        ----------------->AGL3<---------TOE1(3) ===================MADS_MADS <---------AHL20(2)                                                   -- ==================MADS_MADS <---------AHL20(2)                                                    <- --AGL3        ====================================================================================== ------GT1--------->DAG2     --------->AHL20(2)                                                   --- ==================MADS_MADS <---------AHL20(1)             ------>ZmHOX2a(1)                     <-- ===================MADS_MADS--------->AHL20(1)      <-----------GT1                  --------->AHL20(2) ================================MADS_MADS         <---------MYB52(2)      <---------AHL20(2)   <---- ->AGL3 ---------->DOF2     --------->AHL20(2)----------->GT1        --------->YAB1   <---------AHL20(2)   ccctaccaaaaaaaggttctataaattgaaattaattttaaggataagatgtaaataacctcctaagtatatcatatttagttgatatataattccaaga  5076400  Previous    Next  AGI:  At2g12475.1    Description:  similar to LCR50 (Low-molecular-weight cysteine-rich 50) [Arabidopsis thaliana] (TAIR:AT2G12465.1) Range:  from: 5075572    to: 5075935    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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