Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    ------->GAMYB                                                                                  --------------->AGL15                                                                                 --------->MYB46(3)                                                                      ------>ZmHOX2a(2)                                                                     <<<<<<<<<GATA-2                                               --------------->AtSPL8<<<<<<<<<GATA-1                                               --------------->AtSPL3<<<<<<<<<GATA-3                                               <---------------AtSPL8<<<<<<<<<GATA-4                                          --------->ATHB12           <------ZmHOX2a(2)                                   --------->At4g35610               <---------GLK1(1)                                   <---------At4g35610              <---------ARR11(3)                                   <---------ZAT2                   --------->ARR11(3)                                   --------->ZAT2                   <---------AGP1<---------------AGL15                                   ----------->RAV1(2)         --------->YAB1  <-----------GT1                    <---------ATHB12  <-------TEIL            <---------YAB1 <---------WOX13(1)           <----------DOF2       <-----------RAV1(2)    --------->AHL20(1) --------->ATHB12 ---------     <---------GLK1(1)--------->WOX13(1) <---------YAB1 <---------ARR11(3)<---------YAB1    ---------   tgatatgaaatctctttatcaaatcaatccaaacttcagctgcatcattgaagtacaatatactatcatagatctcttgattaaccacattaagaagcca  5073800                                                                      <-------TEIL                                                                     <------ZmHOX2a(2)                                                                    --------->ARR14(2)                                  <---------ANAC46                  --------->ARR11(3)                                <---------ANAC46                    <---------ARR11(3)                            --------->ARR11(3)                      --------->AGP1                            --------->ARR14(2)          <-----------ARR10     --------->AHL20(2)                            <---------GLK1(2)       --------->At4g35610       --------->YAB1   <-----------GT1          <---------ARR14(2)      <---------ZAT2  <---------ARR14(2) >ANAC58                    <---------ARR11(3)      <---------At4g35610--------->WOX13(1)       <---- >ANAC58                  --------->LBD16    <---------YAB1     ---------->DOF2        <---------MYB52(1)   atatttgaccatactattgcaacgattccagattttgtgtataggttctgattcagcaggtctaggcaaagatccatcaataaaactccatttgtttttt  5073900                        --------->ANAC58                        --------->ANAC58                        --------->ANAC46                 --------->ANAC46            <-------TEIL            <-----------HVH21               <------ZmHOX2a(2)                                --------            <-----------TGA1      --------->YAB1                                             --------           --------->YAB1         ----------->GT1                                          <---------ANAC46     --------->ANAC58 <---------ALFIN1     --------->AGP1                                --------->LBD16     --------->ANAC58 --------->ZAT6<---------YAB1                                      <---------LBD16   ---------->DOF2  ----------->RAV1(1)  --------->MYB59                               <---------LBD16 -----YAB1<---------ATHB12   <---------At4g35610   <---------TOE2(3)                  <xxxxxxxxxxxxxx   gattccaaagcaatcgtcatcgcaacactccagctattgtaattagatccatcgaggttgtgagaaacaagagataaacatggatgatcaccggggtgta  5074000                                                                                ---------->DOF2                                                                               --------->LBD16                                                     <---------At4g35610      --------->HSFB2a(2)                                                     --------->At4g35610  <---------ANAC58                                                     ----------->RAV1(2)  <---------ANAC58     <-----      <------ZmHOX2a(1)                      --------->GLK1(2)           --------->At4g35610   ------  ---------->DOF2         <------ZmHOX2a(1) <---------GLK1(2)            <---------At4g35610   ------ ->ALFIN1               <---------TOE2(2)   <---------ARR14(2)          ------->TEIL           ====== --->GT1            <---------HSFB2a(2)   ----------->ARR10          <---------REM1(1)      <------ZmHOX2a(2) xxxxxxxxxsmallRNA(fl3) <---------TOE1(2)<------ZmHOX2a(1)<-----------HVH21   <---------HSFB2a(2)   -   agaagaaaggactgtgagagttgtcgaaggattcaagtccagaggagattctttcaactgagtcacgagtaatgtagcttccgaaagttattcgatcatc  5074100           <---------GLK1(2)        --------->HSFB2a(2)        <---------HSFB2a(2)     --------->AGP1                                                                    <---------ANAC58    --------->At4g35610                                                       <------ZmHOX2a(2)  --------->MYB46(3)                                                         --------->ARR14(2) ----At4g35610                                                    --------->ALFIN1<---------ZAT2 --->At4g35610                                                 <---------DEAR3(1) --------->ZAT2 ----->RAV1(2)<-----------HVH21   <---------At4g35610         <------NtERF2  <---------ARR14(2)    <- ===========RAV      --------->ARR14(2)            ------>ZmHOX2a(2)     <---------At4g35610<-------- ---------->RAV1(1)  <---------ARR14(2)           <------ZmHOX2a(2)  <---------REM1(1) <---------ANAC58   tgcaacagctctagaatgtcatggatttggagattgagctcgtttcgaagcgatcggagaagtcggaggtgttgaagcagatcgagctcgcgttctcatt  5074200                                                                             --------->LBD16       <-                            --------->MYB46(3)                             <---------LBD16       ----                      <-----------ARR10                                 ----------->HVH21      <-----             <---------TOE2(3)                                          --------->WRKY38(1)------>ZmHOX2a(2)     --------->ANAC46 --------->GLK1(2)             --------->LBD16   --------->CCA1(2)   <------ZmHOX2a(2) ---------DOF2*TSS--------->YAB1      ---------->DOF2                 <---------At4g35610--------->ARR11(3) -YAB1      --------->YAB1  --------->DEAR3(2)    <---------LBD16     --------->At4g35610<---------ARR11(3)   cctttcttcgccattgagaatgagaatcgaaccgatgagagaaagagaagaatgcggaagaattcgatcgagagatgaccggagaagagaagatcgcaca  5074300            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->At4g35610         <---------LBD16         <---------At4g35610       XXXXXXXXXXXXXXXXXXXXXXX>MIR829.1        --------->MYB52(1)     --------->ALFIN1      ----------->HVH21      --------->ALFIN1     <-----------HVH21    --------->ANAC55(2)    --------->ANAC58      <---------ANAC46    --------->ANAC58     <---------LBD16                                              --------->YAB1    --------->ANAC46 <---------MYB46(3)                                              <---------ATHB12 --------SPL7        --------->MYB52(2)                                            --------->YAB1 ----->ANAC46     ------------>MYB.PH3(2) ----------------->AGL1      <---------AHL20(2) --------->AHL20(2) ----ALFIN1--------->LBD16<---------ANAC55(2)             --------->GLK1(2)   <---------YAB1        -   ccgtacaagtcaccggagaaagtttgttacggagtggctctgataccatattagagaaataatctgaatgaattaatcttctcattaatcataaaatgat  5074400                                                       --------->ZAT14                                                       ---------->DOF2                                                  <---------At5g28300                                                 <-----------GT1                                              <---------ICU4----------->GT1                                             <---------AHL20(2)                       --------->TOE2(3)                                             <---------YAB1 --------->LBD16         --------->GLK1(2)                                             --------->AHL20(2)                    <xxxxxxxxxxxxxxxxx                                            <---------AHL20(1)                  --------->ANAC55(2)                                            --------->AHL20(1)          <---------LBD16             <-------TEIL                   <---------AHL20(2)   ---------->DOF2<---------ANAC55(2)        --------->AHL20(2)                  --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ----------->GT1         ---------->DOF2--------->YAB1 <---------LBD16 --------->LBD16 --------->DOF2    --------->ZAT6   --------->MYB46(3) <---------ZAT14 --------->MYB52(1)   acaaaagtgtttatatacataagactaaaccaaagtaaaccactaatataattacagtaaaccggataaaagaaaccggattacataatctaaaacagaa  5074500                          --------------->AGL15              --------->MYB59                          ==============================================MADS_MADS                          <---------------AGL15       <-----------------AGL1                         <---------ANAC58             ----------------->AGL1                         <---------ANAC46             <-----------------AG  ------>MYB83     <---------AHL20(2)                <-------TEIL  <---------At4g35610  ------>MYB46(1) <---------AHL20(2)             --------->MYB59   --------->At4g35610  -------->P      --------->AHL20(2)             <---------TOE1(3)--------->ANAC58                  - xxxxxxsmallRNA(si3)     <---------ANAC58        <---------TOE2(3)--------->ANAC58   <----------DOF2<   tgcctacccattctctatatttaaattgcttaaataagaagagagacagtttaggttcaaaattcggtaagctatcccaaatagaagcttttatttctta  5074600                                                                                                  <--                                                          --------->YAB1                          ---                                                          <---------ICU4                          ---                                                         --------->ICU4                           ---                                    <----------DOF2      <---------ATHB12        --------->HSFB2a(2)                               <------MYB46(1)           <---------YAB1          <---------HSFB2a(2)                              --------->MYB59   <---------MYB46(3)     <---------ANAC46           ---      --------->YAB1   <-----------------AGL1  <---------MYB52(1)     <---------HSFB2a(2)       <---- ------>MYC3        <---------KAN4(1) xxxxxxxxxxxxxxxx>smallRNA(i)    --------->HSFB2a(2)  <---------YAB1 -------MYC3  ----------->HVH21<------MYB83   <-------GAMYB  <---------ICU4      <---------HSFC1(1)   catgtgtttcatagttgtgacaatattccaatttggtactttcgcttcggttattgcccatgattatgtcttcgcgtagtattcgagaactatatgattc  5074700  Previous    Next  AGI:  At2g12470.1    Description:  transposable element gene. copia-like retrotransposon family, has a 5.1e-277 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 5069697    to: 5074214    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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