Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           xxxxxxxxxxxx                                                                             ------>NtERF2                                                                            <---------ETT(1)  <------                                                                            ----------->HVH21 <------                                                                            --------->DEAR3(1)-------                                                                        --------->At4g35610  <-------GAMYB                                                                      <---------ICU4    xxxxxxxxxxxxx                                                                   --------->bZIP60(1)<---------DAG2                                                                   <---------bZIP60(1)<----------DOF2                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                             <-----------------------TaNAC69(2)   agagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagatgtgtcatcatctccgaccatgactttttcggtta  5004100                                  --------->ATHB12                                  <--------ATHB1                                  <---------ICU4                                  --------->ATHB51        --------->DAG2                                  -------->ATHB1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 <---------ATHB51   --------->AHL20(2)                                 <<<<<<<<<<AGL24    <---------------AGL15        ---------->ID1           <---------ATHB12  <-----------------AGL3<----------DOF2   <----------DOF2               --------->ICU4    ==================================================  <----------DOF2                <<<<<<<<<<AGL22 ------>MYB83           <---------ANAC58  <---------DAG2 <----------DOF2 <---------YAB1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxx>smallRNA(si3)        <<<<<<<<<<AGL20 ------>MYB46(1)  --------->AHL20(2)                - ---ARR14(2)  --------------->AGL15            <---------MYB59  <----------DOF2        xxxxxxxxxxxxxx ---MYB52(1)  =======================================================MADS_MADS   ---------->DOF2  --- -->ARR14(2)<<<<<<<<<TBF1       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------ANAC58  <----------ID1 xxxxxxx>smallRNA(s2)----------->GT1          --------->ANAC46<-------TEIL   --------->TOE2(3)    <--   tgggccttttgttcttcttctttttgtaaaatccaattattggccttaacccaactaaataaggtgctttaaatgcttttcttaaaagtattgggccaaa  5004200                                                                                                <----                                                                                                -----                    --------->ARR14(2)                                                         <-----                    <---------ARR14(2)                                                        -------       --------->AHL20(2)                    --------->YAB1                                   <------       <---------AHL20(2)                 --------->YAB1                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ======================================================MADS_MADS       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->DOF2  <---------ANAC58      <----------DOF2         <-----------GT1         ------>ZmHOX2a(1) xxxxxxxxx>smallRNA(le3)       <-----------GT1   ----------->GT1      --------->ZAT6  --------->TOE2(3) ------>AHL20(2) <---------ANAC58      <---------------AGL15 <---------AHL20(2)   <---------GLK1(1)<- -------AHL20(2) <---------ANAC46      --------------->AGL15 --------->AHL20(2)   --------->GLK1(1)--   ttaaaagaattaaacagtagcgggtcttaaataatacatttcttttataagaagtttaaacatttaaactttatactacgagtgaaatcctaaaatttac  5004300                                                              --------->YAB1                                                             <---------YAB1                                                           --------->YAB1                                              ------>ZmHOX2a(1) --------->ZAT6                                              <---------HSFB2a(2)                                         <---------GLK1(1) <---------ICU4     --------->TOE2(3)                                         --------->GLK1(1)<<<<<<<<<ARR1       --------->YAB1 <xxxxxxxxxxxxxxxxsmallRNA(i)          <xxxxxxxxxxxxxxxxsmallRNA(s)     <-----------GT1 -----ANAC55(2)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->TOE1(3) ---->ANAC55(2)                        <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->YAB1    --------->ZAT14 ----LBD16                          ----------->GT1       <<<<<<<<<ARR2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -->MYB52(1)                        <---------ANAC46      <---------ATHB12   <<<<<<<<<ARR2 -----GT1  --------->YAB1        <---------ANAC46       --------->WOX13(1)   <<<<<<<<<ARR1 --------->ANAC46 --------ARR14(2)             ----------->HVH21      <-----------GT1 <---------YAB1   --------->ANAC46 ------->ARR14(2)             --------->ANAC46--------->HSFB2a(2) <---------YAB1    --------->ZAT6   ggatttgagtcgatattaatacaagattgtatacgacggggtgaaatcctagaattaacaatcataatactattatacaatcttaaacactaaacacaat  5004400                                                             <---------LBD16                                                     <---------ARR11(3)          <---------AHL20(2)                         --------->ARR11(3)          --------->AHL20(2)                        --------->RVE1(1)       --------->YAB1                               --------->CCA1(1)    <-------TEIL    --------->YAB1                              --------->AHL20(2)    <------ZmHOX2a(1)   agacaatactaataaaacaaatacaacttaaaatttcaaaattttagttataaaatatcgtcttgcggtataggatacattttaaacaaaacaaaaccat  5004500                                                                   --------->CCA1(2)            --------->YAB1                                <---------MYB52(1)           <---------YAB1                            --------->ARR14(2)         --------->YAB1                              <---------ARR14(2)   ------>MYB83                                      <-----------GT1     ---------->DOF2   ------>MYB46(1)                                   ------->TEIL --------->ARR11(3)  --------->ARR11(3) <---------MYB59                   *TSS          ------->TEIL     <---------ARR11(3) <------ZmHOX2a(1)   atacctacatatcatcataaaaacaaaaattcgaccagttcattttagatggatgtatccgtttgaaagatatatgaaagttctgaaggattttgtgaga  5004600                                       <---------At4g35610                              <---------ZAT6                                                     ----                            <---------ANAC46                                                 <-------                        <---------At4g35610                                          --------->MYB46(3)                ----------->GT1        --------->At4g35610                         ----------->RAV1(1)         <---------LBD16--------->At4g35610                                       <----------ID1<----   aacactgcaagaccggaagggtgtatagctgagtgttatctagctgaagaatgcatacagttttgtagtgaatttttgaagaagacaacaaatgttcagg  5004700                                                             <---------ZAT18    <---------YAB1                                     --------->TOE2(3)      <---------YAB1 --------->ALFIN1                               <---------SPL7               --------->YAB1 ------>DOF2                                   <---------ANAC58              --------->TOE2(3) --LBD16    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<------NtERF2          <---------AHL20(2)       ---- --ZmHOX2a(1)         <---------YAB1           <---------ANAC58        --------->YAB1     <----------ID1   aaagtgttgatagaaacactgagtatgagagcaactctatacttgaagggcgtccaatctcagtaggctcttatattaatcttattgaaatggagacaaa  5004800                      --------->ARR14(2)                      <---------ARR14(2)                      --------->GLK1(2)                     <---------GLK1(2)                  <-----------------AGL1                                                      <------                  --------->YAB1                                                             --------               --------->WOX13(1)           <-----------RAV1(1)                              <-------        <-----------RAV1(1)           ------->TEIL            --------->TOE2(3)             <-------- ----->YAB1  <---------YAB1          <---------CCA1(2)        --------->YAB1    <-----------GT1    <-   aatagcccatatgttgtcattcagaatatggcagtctctgaatcttatgttgagtaagttccaatctcaataggctcttatattacttagctatatatat  5004900                                                             ----------->RAV1(1)                                                         ------->PIF5                          ------                                                        --------->At4g35610                    ------                                                        =================RAV                 --------                                         ------>ZmHOX2a(1)--------->ANAC46                   <------- --------->ANAC55(2)                     <---------------AGL15  <---------ARR11(3)           <------- ---AHL20(2)                             --------------->AGL15 --------->REM1(1)             -------- ->AHL20(1)                             --------->TOE2(3)<-------PIF5                        <------- --AHL20(1)                           ---------->ID1    ----------->RAV1(2)                  -------- -AHL20(2)                           <-----------GT1 <---------At4g35610             --------->At4g35610 ----------GT1                     <---------ICU4  <---------ZAT18     --------->ANAC46 <-------TEIL   tttacttatccatatggctgtctctgactacttctaatttttccttatattagtgagcacctgcaacatctacaagactcaaatgtaagatgcagacgtg  5005000  Previous    Next  AGI:  At2g12390.1    Description:  transposable element gene. CACTA-like transposase family (Tnp1/En/Spm), has a 1.5e-186 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element) Range:  from: 5004535    to: 5009000    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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