Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <---------SPL7                                                                           <---------ANAC46                                                                          --------->ATERF1(1)                                                                          <------NtERF2                                                                         ------>NtERF2                                                                      --------->LBD16                                                                      ------>NtERF2                                                             --------->STY1(1)                                                             <---------STY1(1)                                                          <------NtERF2 <---------DEAR3(1)                 ----------->ARR10                        ------>NtERF2 <---------ANAC46                <--------P                               --------->ANAC58<-----------HVH21        ---               <-------GAMYB                             --------->ANAC58<---------ATERF1(1)------>NtERF2           --------------------->WRI1               --------->ATERF1(1) --------->DEAR3(1) ----------        <----------DOF2                             ---------->CDC5  <---------RAP2.6(2)  ------>NtERF2 -------->HSFB2a(1)                              --------->ZAT2   --------->ARR14(2)      --------->LBD16 ---------HSFC1(2)                               <---------ZAT2   <---------ARR14(2)<---------ANAC58 ---------HSFB2a(1)                   <----------DOF2 ------>NtERF2 <---------LBD16 <---------ANAC58   gaaggctcttctttttgggttgattcgccttcaacgaaggctttcggactcggctcggcccgcctagggttccggcgtcgtctggttcttgccgcgacga  5001900                                          <--------P                                         <-------GAMYB                                        <---------MYB46(3)                  --------->ARR14(2)   <---------AtMYB61                  ------->TEIL     <---------At4g35610                  <---------ARR14(2)   --------->ALFIN1    <----------DOF2                --------->At4g35610             --------->ANAC46 ------>NtERF2    <---------ARR11(1) <-----------RAV1(1)       ------>ZmHOX2a(1) <---------RAP2.6(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ARR14(2)                     --- --->NtERF2      <---------ARR14(1)<---------ZAT2          --------->ARR14(2)               >>>>>>>>>TBF1 ->HVH21         <---------CCA1(2) --------->ZAT2          --------->GLK1(2)  <----------DOF2    ----   tgccgactttgactccaacgtatctcgttgtcatcgtagctgtggttgctctggttctgagaatcctccaagtcgctcatcttttagtttcgaagaagaa  5002000                                        ---------->DOF2                                   ----------->GT1                                   ==================HOX2a_HOX2a                                   ------>ZmHOX2a(2)                                  <------ZmHOX2a(2)          ----------->HVH21       ===================HOX2a_HOX2a                             <-------          <---------REM1(1)      --------->ARR14(2)                               --------->ICU4          --------->ALFIN1 --------->DAG2     <------ZmHOX2a(1)                 ---------->DOF2 ------>DAG2              ---------->DOF2--------->DAG2             ----------->GT1  ----------->GT1< ------>DOF2    ---------->DOF2  <---------ARR14(2)--------->At4g35610         <------ZmHOX2a(1)   --   aaagtgatggaggtgaaggaaagaagagaaaagcagatcggaaaaagaggattagcagagaaacacgatggagataatagaggaaagatgaaaattttct  5002100                                                                                        <---------TGA1a                                                                                        <---------ANAC58                                                                                        --------->O2                                                                                        <---------ANAC46                                                                                        <---------ANAC55(2)                                                                                        --------->ANAC55(2)                                                                                        <---------ANAC58                         --------->ICU4                                 ----------->HVH21      ------                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------At4g35610    <---------O2             --------->AHL20(2)                                  =================================MYC_MYB     ---------->DOF2----------->GT1                         <---------ANAC58            ============= ----GT1     <---------AHL20(2) <------ZmHOX2a(1)           <---------ANAC46            --------->TGA1a ---------------AGL15--------->At5g28300      <-----------GT1    <-------GAMYB       ----------->TGA1 ------->TOE2(3) --------->ANAC46     ---------->DOF2       <---------ANAC58      --------->ALFIN1   atctcaacaaagaaattaaacgcagtaaatattaggagaagaaagaagttaccttggaagttgtgtgagttgatgtgaaaccgagtggagacgtgagaag  5002200                                                      --------->REM1(2)                                                     --------->ALFIN1                              --                                           ------>ZmHOX2a(2)                                  -------                                          --------->GLK1(1)                         <---------MYB52(2)                                          <---------GLK1(1)                       --------->MYB52(1)                                          <------ZmHOX2a(2)                    --------->ANAC58<-----             --------->YAB1              <---------ARR11(3)                    --------->ANAC58<-----             <---------ICU4             <---------GLK1(1)                   <---------ANAC58  -------   ---------->DOF2   <---------YAB1     --------->GLK1(1)                   <---------ANAC58  -------  <---------AHL20(2) --------->ICU4<---------ZAT14  --------->LBD16  <---------MYB52(1)       ------- ----->GT1  --------->ICU4   --------->HSFB2a(2)  <---------LBD16  <---------MYB46(3) --------->MYB52(1) =============bZIP_DOF <---------ARR11(3)--------->ARR11(3)------->TEIL<---------MYB46(3)----------->HVH21   ttatttaaagggccatcatcaccatgattttcgagattgcagagatctcttccccgtgttgaatctgagccgttggatgcgaggcaacgaagggacgcgt  5002300                                   <---------CCA1(2)                                 <---------ANAC58                           -------->P--------->RAP2.6(3)                           ------->TEIL                          xxxxxxxxxxxxxxxx>smallRNA(i)                      --------->WOX13(1)       <---------ARR11(3)                    <------NtERF2<---------ANAC46                    ------------>CBF--------->ARR14(2)   *TSS             <---------At4g35610        --------->ARR11(3) ------->At4g35610  --------->At4g35610       <---------CCA1(2)         --------->TOE2(3) -->ANAC58         --------->RAP2.6(2)        <---------GLK1(1)         --------->TOE1(3)         --- ------TGA1      <------NtERF2   <---------ANAC55(2)        --------->ANAC55(2)                   === ------HVH21     --------->At4g35610--------->MYB52(1)     <---------TOE2(3)                     ---- -->ANAC58       <---------At4g35610<---------ARR14(2)    <-----------RAV1(2)      --------->AHL20(2) -->ANAC46     <---------DEAR3(1)--------->ANAC55(2) <---------YAB1     <---------MYB59          ---- -->bZIP60(2) --------->RAP2.6(3)<---------ANAC58 <----------DOF2     ------->TEIL <---------AHL20(2)   catctcgactgtccaagtcggcagcaatctacctcgcgtatcggctcgatatcttttgattcaggtaatccgaacctaaaccgattttaatgagtttatc  5002400                                                                        <---------At4g35610                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                   --------->GLK1(1)                                                                   <---------GLK1(1)                    <---------YAB1                                --------->ARR11(3)             ------>ZmHOX2a(2)                                    <---------ARR14(2)           --------->ARR11(3)--------->TOE2(3)          <---------At4g35610           <---------ARR11(3)<---------DAG2             --------->At4g35610        <---------WOX13(1)<---------ALFIN1              ----------->RAV1(2)      --------->ATHB12 <-----------GT1              <---------ARR11(3)  --------->At4g35610 --->ZmHOX2a(1)   --------->YAB1        <---------CCA1(1)         <---------ARR11(3) ===================HOX2a_HOX2a         <---------RVE1(1)         --------->ARR14(2)          ------- ----->TOE1(3)    <---------ICU4       --------->ARR11(3)         <---------AGP1              ------- ----->TOE2(3)   <---------YAB1        <---------ARR11(3)        <---------CCA1(2)            -------   ctcaaaactgattgatcttatcatgataccaccttatcaacgatattttcgcaatatcacctgaattagatctccgctcatcgagttcgcctactcactc  5002500                                              --------->TOE1(2)                                              --------->TOE2(2)                                              ------->PIF5                                              <-------PIF5                                        --------->ARR14(2)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       --------->GLK1(1)                                    --------->LBD16                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <---------ANAC55(2)                                   --------->HSFB2a(2)                            --------->ANAC58                                 ------>ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ANAC55(2)       <---------ANAC46     <---------GLK1(1)<---------ZAT2                    --------->ZAT2      --------->ALFIN1      --------->GLK1(1)--------->ZAT2        ------->GAMYB  --------->ANAC58     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ARR14(2)       -------->P    <---------ZAT2    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<------ZmHOX2a(1) --------->MYB52(1)    --------->ANAC58     <-    --------->ALFIN1       <---------ARR14(2)<---------At4g35610 ------>MYB83 --------->ANAC58     -- -->ANAC58                 --------->ARR14(2)----------->RAV1(2) ------>MYB46(1)---------->DOF2   <-- -->ANAC46     <-----------RAV1(1) <---------HSFB2a(2) <-----------GT1 <---------ATHB12    <---------ANAC46 -->ANAC58<------NtERF2   <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(i)---------->DOF2 <-----------HVH21   aatgggctggggggcaaatgttggagcaggatttcctccaggaatccacctgcgaaaataccagtccaacccaataagcccagcaagcccatcacgtaga  5002600                                                                           --------->GLK1(1)                                                                           <---------GLK1(1)                                                                           --------->CCA1(2)                          --------->ZAT18                                 --------->ARR11(3)                      <-------MYC3                                        <---------ARR11(3)     --------->LBD16  ------->MYC3                             <---------At4g35610    --------->ANAC58 --------->O2                           <---------At4g35610    --------->ANAC46 <---------O2                    <---------MYB59      <---------ARR14(2)    --------->ANAC58 <---------TGA1a        <---------DAG2--------->YAB1----------->ARR10 --------ARR14(2)    ==================================bZIP_DOF--------->At4g35610  <-----------GT1 ------->ARR14(2)    --------->TGA1a        <----------DOF2 --------->At4g35610     --------->YAB1--- ----ZmHOX2a(1)    <---------ALFIN1 <-----------RAV1(1)  <---------ATHB12 --------->ARR14(2)    <----   ggacatgcgcaactctgaagcccacatgtgaactaggtatgttgggccttatgggcctaatcatctgctgaagggagatatgcgaataacaatttgggaa  5002700                                                                                                    -                                                                          <------ZmHOX2a(2)      <---                                                                          --------->GLK1(1)      <---                                                                         <---------AGP1       -------                                                                         --------->ARR14(3)   <------                                                                   <---------LBD16            <------                                                               --------->ARR14(2)             -------                      <---------RAP2.6(3)                  ======================HOX2a_HOX2a  -------                      ------>NtERF2                     <---------HSFB2a(2)                   <------                     --------->DEAR3(1)              --------->ARR11(3)  --------->ARR11(3)   <------                     ----------->HVH21               <---------ARR14(2)  <---------ARR14(3)   -------                    --------->ATERF1(1)             --------->GLK1(1)    <---------ARR14(2)   <------                    --------->RAP2.3(1)            ---------->TaMYB80--------->LBD16          -------                    --------->DEAR3(2)         xxxxxxxxxxxxxxxx>smallRNA(s)                  <-------                    <------NtERF2              <xxxxxxxxxxxxxxxxsmallRNA(i)                  --------                   ------>NtERF2              ------>MYB46(1)  --------->GLK1(2)             --------                   --------->At4g35610        ------>MYB83--------->LBD16<---------ARR11(3)  --------                   <---------At4g35610       <xxxxxxxxxxxxxxxxsmallRNA(s)--------->ARR14(2)  <-------                   <---------ATERF1(1)     --------->At4g35610 <-----------ARR10             <-------                  <---------ARR14(2)       <---------ANAC58=======================HOX2a_HOX2a<-------                  --------->ARR14(2)       <---------ANAC58<------ZmHOX2a(1)--------->HSFB2a(2) <----                 <------NtERF2             <---------bZIP60(2) <---------ARR14(2)     <---------ARR14(2)                 --------->ATERF1(1)    ----------->HVH21--------->LBD16<---------ARR14(1)   <-------                --------->LBD16      <---------ARR14(2) <---------LBD16 <---------CCA1(2)  <---------              <---------HSFB2a(2)    --------->ARR14(2) <-----------RAV1(2)------>ZmHOX2a(2)---------              --------->HSFB2a(2)  --------->LBD16 <---------KAN4(2)--------->ANAC46 <---------GLK1(1)         <---------HSFB2a(1)      <---------ANAC55(2)--------->ARR14(2)--------->LBD16--------->ARR14(2) ------>ICU4  <---------LBD16     <---------ANAC46 --------->ARR14(2)<---------LBD16 --------->CCA1(2) -----At4g35610--------->ANAC46  <---------LBD16   <---------ARR14(2)------>NtERF2----------->GT1<---   ctgatgaagaaatgttcgcggagccgacctgatattgcggaaatgacctgccgaatatccaggagaatccccgcggatctcgaatggatatactcacgtg  5002800  Previous    Next  AGI:  At2g12385.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 4999070    to: 5002303    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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