Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      ------>ZmHOX2a(2)                                                                                  --------->ARR11(3)                                                                                  <---------ARR11(3)                                                                                  --------->ARR14(2)                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                         <---------------AGL15                                                    <---------AHL20(2)   --------------->AGL15                                                   --------->AHL20(2)   ----------------->AGL2                                          --------->ANAC58              ----------------->AGL3                                          --------->O2                  <-----------------AGL2                                          --------->ANAC46              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ICU4             --------->ANAC58     --------->WRKY38(1)<---------ARR14(2)              --------->ICU4            <---------ALFIN1  ------->TEIL  <-----------------AGL3              <---------YAB1         --------->ANAC58   <-------TEIL  <---------ARR14(2)            --------->YAB1           --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <           <---------YAB1       <---------YAB1     <---------AHL20(2) --------->ARR14(2)            <   --------->YAB1             --------->YAB1  --------->AHL20(2)     <---------CCA1(2)  --------->HSFB2a(2)  <---------YAB1    <---------YAB1   --------->ANAC46  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        -- ------->GLK1(2) ----------->TGA1--------->YAB1<---------YAB1 --------->DOF5.7(2) ------->TEIL  <---- -------GLK1(2)--------->YAB1<---------YAB1--------->TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---   cattctgataactatcatcatgacgatagttatcatcataccccacgttaaaattaaatgcatcgttcaccatatccacatatggatcttctacaatatt  4925300                                                                                               ------                                    <---------ANAC58                                           <-----          --------->ICU4            <---------ANAC58                                          -------          <---------YAB1   <---------ANAC55(2)                                           --------->YAB1 ------>MYB83              --------->ANAC55(2)                                         ------>MYB83 ------>MYB46(1)          <-------TEIL                                                 ------>MYB46(1) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC46                                 <---------MYB46(2) ---------ALFIN1     --------->AHL20(2)                        <---------ICU4        <---------MYB59 ------->MYB46(3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <-------TEIL          --------->ANAC46 -------GT1      --------->ZAT6 ------>ZmHOX2a(1)  ------>ZmHOX2a(1)        --------->AtLEC2--------- --------GT1<---------GLK1(2) ----------------->AGL1 <---------CCA1(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   acccacttcttcatgattctcactaaaatacgtcctattcgtgtaactcgttcctatatccatattcatttcttctccatgcttataccaaacataataa  4925400                                                                                                 ----                                                                         --------->ZAT6 --------->YAB1 --->YAB1                                   --------->LBD16     <---------ICU4          --------->AHL20(2) ----ICU4                                   --------->ANAC46   <---------YAB1     <------ZmHOX2a(1) -->ICU4                                 -------->P        <-----------GT1 --------->ANAC46      ---- >YAB1                            --------->ZAT6    <---------ANAC46     --------->ANAC46     <------   tcaggcataaatccatgactaaacaaatgactactaactcttctacccgagatgatgtgtttttcattcttgcatacactacaaggacaatgaaatttac  4925500                                                                                    <---------MYB52(1)                                                                                   <-----------TGA1                                                                      ----------->HVH21                                                                    --------->At4g35610                                                                    <---------At4g35610         --------->ZAT14                                          <---------RAP2.6(2)      --------------------->WRI1                               --------->ARR14(2)  <-----------HVH21  --------->MYB46(3)                                   ------>ZmHOX2a(1)          --------->ANAC46 ----->TOE2(3)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------ARR14(2) --------->bZIP60(2) ----->TOE1(3)    --------->At4g35610    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->O2 <----- -----GT1<---------ZAT14               <---------YAB1----------->RAV1(2)         --------->LBD16   ctcaactactctgtactattggctgactattagcgaatgtcatgaattgctcaactcctgcaacgtattcggctgacaaattccccgtcacttcatcaaa  4925600                                         <---------ICU4                                        <---------YAB1                                        --------->ICU4 ------>NtERF2<---------AHL20(1)                                        <---------ATHB51       *TSS --------->AHL20(2)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    ------>NtERF2      --------->LBD16                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 --------->SPL7       --------->ANAC46                                --------->ARR14(2)    --------->ANAC58                                <---------ARR14(2)    --------->ANAC58                         <-----                          ------->GAMYB<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------AHL20(2)                          --------->ANAC46           <---------LBD16<---------AHL20(2)     ----------                         --------->DEAR3(2)       <-----------GT1   --------->AHL20(1)    <----------                         --------->MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->AHL20(1)  < ----CCA1(2)           --------->ARR14(2)--------->ATHB51      ------------>CBF <---------AHL20(1) <-   tctcttgtacatccaatctcgatagaaaccgccagtaccgccataattgtagtttcccgccattatacaataaaataactaatatttttttttttctctt  4925700                                                     <---------AHL20(2)                                                    <-----------TBP                                                    --------->AHL20(2)                                                   <---------YAB1                                            <---------TOE1(3)                                            ------->TEIL                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <---------DOF5.7(2)                           ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     -                       <------MYB83      --------->DOF5.7(2)                                        -                       <------MYB46(1) <---------ANAC58                                        <-----  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC46                                        ------ -----DOF2             <---------MYB46(3)----------->HVH21                                     ------ >ID1          --------->ATHB12        <---------ANAC55(1)                                 --------->AHL20(2) -GT1         <---------YAB1           --------->ANAC55(2)      <---------DAG2         --------->REM1(1) -----------RAV1(1)<---------MYB46(3)  <---------ANAC55(2)  ------------>CBF      --------->ZAT6<---- --------TOE2(3)   <-----------RAV1(1) <---------ANAC58   --------->ANAC46     <-----------GT1 <-----   tgatgttgttgttgttttgatttgttggtgaaagaagagttgcgtgaacgtttattatataggccaatttttgtgactaatttacgactacaactaaata  4925800        <---------MYB111(1)        <---------MYB46(2)        <---------MYB59      ------->TEIL   <---------REM1(1)  --------------->AtSPL8  <---------------AtSPL8 <---------ANAC46 <------MYB83 <---------ANAC55(1) <------MYB46(1) -------->MYB59 -------->MYB111(1) ----AHL20(2)                                                         --------->ANAC46 --->AHL20(2) -------->P                                       --------->HSFC1(2)         <------ZmHOX2a(1) --->ICU4 ------>MYB83                                        <---------O2               <---------ZAT18 -----ICU4------>MYB46(1)                 <----------DOF2     --------->O2----------->RAV1(1) ----ATHB51 <---------MYB111(1)           <---------DAG2   ----------->HVH21   <------ZmHOX2a(1)    <   attaggtgtacctacttaccaatgcgaaacatgttttccatctactttatacgagtacgttgcgacgtttctacgacaacaggacgactagaggacttag  4925900                                                                                                    -                                                                                                    <                                                                                               <-----                                                                                               <-----                                                                                <---------ARR11(3) --                                                                          ----------->RAV1(1) <------           <------NtERF2                           --------->DOF5.7(2) ------->GAMYB          <------         --------->ANAC46              --------->At5g28300       --------->ANAC58             -------    --------->ZAT14                   ----------->GT1            --------->ANAC46             -------    <---------ZAT14          --------->AHL20(1)    <---------MYB52(1) --------->MYB46(3)   --------->YAB1 <---------ANAC46            <---------AHL20(2)  <---------MYB46(3) --------->MYB52(1)     --------->AHL20(2) ------NtERF2                --------->AHL20(2)  ----------->GT1 --------->ANAC58         <---------ATHB12   tcggcctgtagtcgccatattagcgactaaataaaatagacggtagaatagtcgttaattagcgactaagcaacgacaacaatatcccttcaataatata  4926000                          <----------DOF2                                                 <----------                       <---------ALFIN1                                               <-----------HVH21                     ------>NtERF2                                                   <---------REM1(1) -------->TOE2(3)    <---------RAP2.6(3)                                             <-----------RAV1(1) -----------HVH21   <---------ETT(1)--------->ZAT14                                  ================ ----YAB1  <-----------HVH21        <---------At4g35610                           <-----------RAV1(1) ----AHL20(2)       --------->ANAC46<---------ZAT14                               =================== ------->YAB1       --------->At1g77200                                         <---------ANAC58 ---AHL20(1)        <---------ATERF1(2)                                         <---------ANAC46 ---AHL20(2)       xxxxxxxxxxxxxxxx>smallRNA(i)           --------->MYB46(3)    <---------ANAC58   -- -->AHL20(1)   <---------ANAC58     --------->At4g35610 --------->MYB52(1)    <-----------GT1      <- -->AHL20(2)   <---------ANAC58 ------>NtERF2   ----------->GT1     xxxxxxxxxxxxxxxx>smallRNA(s)  <--   atcgtcaaatagtcgtcacttgccgacactttgccgactgcagacgatagtcgtaaaacaacgactatgtgactacaatttttcgtgttgtcgcagggga  4926100            <------NtERF2           ------>NtERF2          --------->DEAR3(1)        <-----------HVH21    <---------ARR14(2)                                  <---------MYB46(3)    --------->ARR14(2)                                 <---------WOX13(1)   --------->GLK1(1)                       --------->MYB52(2)   <---------GLK1(1)                       <-----------RAV1(1)--------->LBD16 -RAV1(2) <---------ETT(2)                 <---------MYB46(3) ------>NtERF2 =RAV   <---------ATERF1(1)                --------->MYB55(2)<---------ANAC46 =RAV  --------->ANAC46                  <---------MYB52(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->GT1------>NtERF2    <-----------GT1<-----------RAV1(1)                            ------>ZmHOX2a(1) --------ANAC46            <---------TOE2(3)<-------GAMYB--------->KAN4(2)            <-----------GT1 ---------------------TaNAC69(2)  --------->ZAT6  <---------At4g35610              <----------DOF2   gtcgtaaatccgtcgccaactagtcgtataatgttacgactacgtttgttgtcgctgattgttccgcctatagagaagactgcttctttaacctcctctt  4926200  Previous    Next  AGI:  At2g12260.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 4.9e-150 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus) Range:  from: 4921817    to: 4925663    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g12270.1    Description:  transposable element gene. pseudogene, similar to putative reverse transcriptase, blastp match of 27% identity and 6.7e-40 P-value to GP|21686921|gb|AAK71569.2|AC087852_29|AC087852 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)} Range:  from: 4926144    to: 4927492    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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