Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------MYB52(1)                                                                                   --------->LBD16                                                                                 <---------LBD16                                                                                 ------>ZmHOX2a(2)                                                                                --------->ARR14(1)                                                                                --------->CCA1(2)                                                                                <------ZmHOX2a(2)                                                <----------DOF2                --------->ARR11(3)                                            --------->ARR14(2)                 --------->ARR11(1)                                            <---------ARR14(2)                 --------->AGP1                                            <---------MYB52(1)                 <---------GLK1(2)                                          --------->LBD16                      --------->ARR14(2)         ----------->GT1             <---------GLK1(1)                         <---------ARR14(2)    ---------->DOF2               --------->ANAC58                      ---------->DOF2      -------- --------->GT1     <---------YAB1 --------->ANAC46    <<<<<<<<<<<<<<<<<LFY   ----------->ARR10  <---- -----REM1(1)    --------->YAB1   --------->ANAC58 ----------->GT1  ------>ZmHOX2a(2)<xxxxxxxxxxxxxxx   gtagtcaaaaggagtaaaatcataatacggtattgcaggcaatcccgatactttggtaacaatggtctgatccataaaacagatccggtagtcatgggac  4890600      <---------ARR14(2)                                                    ----------->GT1      --------->ARR14(2)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <----------TaMYB80                                            --------->ARR14(1) <---------ANAC46                                                  --------->CCA1(2)           <----- <---------ANAC58                           <-----------GT1       <---------ARR14(2)          ------>NtERF2 <---------ANAC58                        --------->YAB1           --------->ARR14(2)   xxxxxxxxxxxxxx <---------ANAC55(1)                   <---------YAB1         <---------LBD16 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ANAC55(2)                --------->ICU4            <---------HSFB2a(2)     --------->ANAC58 --->HVH21                       ---------->DOF2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <------- -----bZIP60(2)           --------->MYB52(1)<---------ICU4    --------->HSFB2a(2)     --------->ANAC58 xsmallRNA(i)     <---------ANAC46 ----------->GT1    <---------ATHB12 <-----------HVH21  xxxxxxxxxxx   gttgcgtgtattccctcgttgtggagacgaactgagaaagtattaataactatccactcattttctcggatacggtcagagtaaaatgaagcaaggcgac  4890700                                                <---------ICU4                                                --------->ATHB12                                               <---------YAB1                                               --------->ICU4                                             --------->YAB1                                             <---------ICU4                                      <---                       --------->ANAC58     <---------YAB1                                      -----                       --------->ANAC58     --------->ICU4                                      -----                  --------->LBD16         --------->YAB1                                        ----- -NtERF2         <---------LBD16          <---------ICU4                ---------->DOF2 ---------->DOF2 xxxxxxxxx>smallRNA(fl3)                 <---------ATHB12        <---------MYB52(1)--------->TOE1(3) --DEAR3(1)     <---------LBD16    ----------->RAV1(1)        ------->TEIL----------->GT1      ------ xxxxxxxxxxxx>smallRNA(le3)       --------->REM1(1)       <---------------AtSPL3   --------->TOE2(3)   gattaatggtagcctctatgcgggaacgcattccctacaacaaatcatcatgattagggacatgtacggtatgtgaaagtaaaaacgttagaaagacgtt  4890800                                                                                               ------                                                                                            ---------                                                                                            <--------                                                                                         <---------ANAC46       <-----------GT1                                                             ---------->DOF2    <---------ICU4                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------DOF5.7(2)                                                      <---------ALFIN1  <xxxxxxxxxxxx ---->WRKY38(1)                     <---------ZAT2       --------->ANAC58       <xxxxxxxxxxxxxxxxxxxx ---->WRKY12                      <-----------RAV1(2)    --------->ANAC58       <xxxxxxxxxxxxxxxxxxxx ---->WRKY45            --------->ICU4                   --------->ANAC46  ----------->HVH21--------- --->DOF5.7(2)   --------->At4g35610--------->ZAT2     <---------ALFIN1  ----------->RAV1(2)<--------   gacgaaatattactcgattatctgccaagatgagacccaggtcgaactcatttatgcccacgcatttttgaaacaccctgaccacaaaagcgcgtatact  4890900         <---------ICU4         --------->ATHB12   ------>ZmHOX2a(1)                       <---------ATHB12 --->ANAC46                              --------->WOX13(1) >ZAT14 --------->ICU4               <---------GLK1(1) -ARR14(2)   <----------ID1          --------->GLK1(1) xxxxxxxxxxxsmallRNA(si3)           <---------ARR11(3)*TSS  ----------->RAV1(1)              <------- xxxsmallRNA(i2)          <---------ARR14(2)         <---------YAB1               <----------DOF2 xxsmallRNA(i2)  ---------->DOF2<---------ANAC58   <---------ICU4               ------>MYB83xxxxxxxxx >ARR14(2)--------->TOE1(2)     <---------ANAC58   --------->YAB1               ------>MYB46(1)    -- -ZAT14 <---------YAB1    --------->ARR14(2)      --------->ICU4        <---------ICU4   xxxxxxxxxxxx   ccatcctgtgatcatgggacaaagttcggaaatggcatgatatccatcatccatgatgacaacaacaaaaaccaaaatgaccgactttctgtcttatgtg  4891000                                                                                 <------MYB83                                                                               <---------WOX13(1)                                                                            --------->ICU4      --------->ALFIN1                                                      <---------YAB1    <---------ANAC58                                                    ------------------>ATHB9   --    <---------ANAC46                <-------GAMYB                      --------->ANAC46       <------    <---------ANAC58           <---------TOE1(3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------MYB46(3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ANAC46             <---------TOE2(3)                  ---------->DOF2<------MYB46(1) <--- --ANAC46           <---------AHL20(2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxx>smallRNA(i2)   --------->MYB52(1)           --------->ARR11(3)--------->ATHB12<------- --------->HVH21    --------->AHL20(2)   <-----------GT1   <---------ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxx>smallRNA(i2) --------->AHL20(2)    <---------GLK1(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   tgtgatgggtgtggaattttgtttaaatgaattaagggtgttatcaccagtttcttaaatagattttagaaagacgcgatgattggtcccaaattgatgt  4891100                        <---------WRKY38(1)                        <---------WRKY12                                            <---------ANAC55(2)                       <---------MYB52(1)                 <-------TEIL             <---------------AtSPL8                       --------->DOF5.7(2)            <-------TEIL                 <---------------AtSPL3                      <-----------HVH21       --------->ANAC58                     --------------->AtSPL3     ----------->GT1 ------->GAMYB       --------------->AtSPL8                    <-------TEIL   ---------->DOF2  <------------MYB.PH3(1)   --------->ANAC58                 --------->DAG2   --------->ZAT14  --------->MYB46(3)   <---------------AtSPL8               ---------->DOF2 ------->ZAT6       <------------AtMYB77 --------------->AtSPL3         --------->WRKY12 ---REM1(1)        <---------At5g28300--------->YAB1  <-----------------------TaNAC69(2) --------GT1      <-----------GT1 <---------AHL20(2)<---------ARR14(2) --------->DOF5.7(2)      ----- --TOE2(3) --------->AHL20(2)     <---------YAB1    --------->ARR14(2)--------->TOE2(3)<-------TEIL--   aacagtatagcaaaaaaatgtaaccgtcaactctgtataattagaagtacccaatatacgtacaaatgaaaacgtttaccaaaagtacgtacagaaaaca  4891200                                                           ------->TEIL                                                           --------->SPL7 <---------ANAC58                                                           <-------TEIL   <---------ANAC58                                                           <---------TOE1(2)                                                         --------->TOE2(2)<---------ANAC46                                                         <---------SPL7  --------------->AtSPL3                                                        <---------ANAC55(2)                                                        <---------ANAC58 <---------------AtSPL3                                                        --------->ANAC55(2)                                                        <---------ANAC46 <---------------AtSPL8                                                        <---------ANAC58<---------DOF5.7(2)                    --------->YAB1                     --------------->AtSPL3                    <------ZmHOX2a(1)            <---------ZAT18        --------->MYB52(1)           --------->DAG2                        <-------TEIL       --------->DAG2          ---------->DOF2                  <---------TOE1(1)   <-------TEIL             --------->AHL20(2)   <---------WOX13(1)     --------->AHL20(2)     --------->ZAT18    <---------TOE2(3) --------->AHL20(2) ---->MYB52(1)    <---------TOE2(3)        <---------TOE2(1)   ------->TEIL  <-------TEIL ----->GAMYB      <---------TOE1(3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------SPL7           <   acgggattgacaaaaagttgaaggataatcaaatacaccgataatacgaggtccacttacgtacgtacataaggtaacgtacagacaaaataatatgtca  4891300                                    ------->TEIL                                    --------->SPL7                                    <---------TOE2(2)                                    <-------TEIL                 --------->ANAC58                                  <---------SPL7                 ----------->GT1                                  --------->TOE2(2)              --------->ANAC58                                  --------->TOE1(2)        --------->ANAC58                                <-----------------------TaNAC69(2)                                --------------->AtSPL3     --------->ANAC58                                <---------------AtSPL8    <---------LBD16       <xxxxxxxxxxxxxxxxxxxx                          ----------------->AG       ---------->DOF2          ------->GAMYB                       --------->GLK1(1)           <---------HSFB2a(2)       --------->MYB46(3)                       <---------GLK1(1)           --------->HSFB2a(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      <---------ARR11(3)      <---------At4g35610<---------ANAC46    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->ZAT2     <---------ANAC55(2) -----------GT1       --------->ARR11(3)      --------->At4g35610--------->ANAC55(2)   ------>NtERF2   tattactacatagactgatcaaaagatttccaaaaacgtacgtagaacagcttccaaaagcacggagacgtaaactctaaccatcgcgaggcctaaatag  4891400                                           --------->ZAT18                                           --------->ZAT14                                           <---------ZAT14                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    --------->ARR11(3)                                    <---------ARR11(3)                               ----------->GT1                                 <---------RAP2.6(3)                                ----------->GT1                                 ------>NtERF2        <------ZmHOX2a(1)           ---------->DOF2     <---------AtLEC2            <---------DDF1--------->ICU4                   <---------HSFB2a(2)     <---------ANAC58           <---------ETT(1)--------->ATHB12          <---------DAG2           xx     <---------ANAC58      <---------MYB52(1)<-----------------AG         <----------DOF2         --- xxxsmallRNA(i2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <----------DOF2  --------->HSFB2a(2)--   ggtttttgcatgtcttcttgttatgccccgtttgccgacatcttgtacactgattaggaatgagtcttttctgcctctttttctgaaagttaaaaaatgg  4891500  Previous    Next  AGI:  At2g12140.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45080.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD33040.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) Range:  from: 4890010    to: 4890954    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g12150.1    Description:  transposable element gene. Mutator-like transposase family, has a 1.1e-84 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 4891489    to: 4894318    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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