Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                              ------->GAMYB                                                                              <---------ALFIN1                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                             --------->MYB46(3)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                          xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                          <---------WRKY12                                                                          <---------WRKY38(1)                                                                         --------->WRKY18(1)                                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                        <--------ZAP1                                                                        <-----------HVH21                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->ALFIN1      <---------MYB52(1)                    --------->ANAC58                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    --------->ANAC46                                <xxxxxxxxxxxxxxxxsmallRNA(i)                    --------->ANAC55(2)                            <---------ZAT2<-------MYC3                    --------->ANAC58    <----------DOF2            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   <---------TOE1(3)    <---------DAG2           --------->ZAT18 ------->MYC3                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     ---------->DOF2--------->WOX13(1)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------TOE2(3)   ------->GAMYB            xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s)  --------------->AGL15    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ALFIN1xxxxxxxxxxxxxxxxxxxxx  <---------------AGL15   <-----------GT1     <----------DOF2   xxxxxxxxxxxxxxxx>smallRNA(s)    <----  <----------DOF2 <-----------GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   cattcttttttaagaaaatttcacgttataacacccttgtgactttttctttcacaaatagacaaagtgggctgggtcaaccacgttttagccattaggc  4880300                                                        <---------ARR14(2)                                              <---------ANAC58                                           <---------ARR14(2)                                           --------->ARR14(2)                                          <-------GAMYB --------->TCP20                                         <---------DEAR3(2)                                         <---------MYB46(3)                                        <---------RAP2.6(2)    --------->ZAT14                                        <---------DEAR3(1)     <---------ZAT18                                       --------->ATERF1(1)     <-------TEIL                     -----             <-----------GT1           <------NtERF2<---------LBD16                             <----          <---------ARR14(2)         <---------DEAR3(1) --------->TCP16(1)                      -----          --------->ARR14(2)        --------->ATERF1(1) --------->ARR14(2)  <------------MYB.PH3(1) -        <------NtERF2             <---------ANAC46 <---------ANAC58     ------>ZmHOX2a(1)      ------ xxsmallRNA(se3)                --------->MYB52(1) <---------ANAC46    --------->TOE2(3)       <----- xxsmallRNA(se3)               ----------->HVH21   <---------ANAC58    --------->TOE1(3)      ------- xxx>smallRNA(i2)             <---------MYB52(2)<---------MYB52(1) <----------DOF2            <------ -------------AGL1          --------->GLK1(2) <---------ANAC58 <---------ZAT14 <---------MYB52(1)   <   ccaaaatggccgaatttgccctccaacgagaaactgacggaggcggtttcgtttcgtggaaccggttcactttccttaaccgttttctggtttcaaaata  4880400                 --------->AHL20(2)                 <---------AHL20(2)             --------->ICU4                                             --------->ARR14(2)        --------->AHL20(2)                                              <---------ARR14(2)        <---------AHL20(2)                                              <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------AHL20(2)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)    --------->AHL20(2)                                         --------->At4g35610 ---->AHL20(2)  <---------YAB1                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----AHL20(2)<---------ICU4                                ---------->DOF2<---------ANAC58 ---->AHL20(1)-------->ATHB1                              <xxxxxxxxxxxxxxxxsmallRNA(i) -------->AHL20(2)                                       <---------HSFB2a(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) --->AHL20(2)--------->AHL20(1)      --------->WOX13(1)  --------->HSFC1(1)<---------ANAC58 ----AHL20(2)--------->AHL20(2)     --------->AHL20(2)   --------->HSFB2a(2)--------->LBD16 -->AHL20(2) <---------YAB1  ----------->GT1             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---AHL20(1) <---------AHL20(2)    --------->AHL20(2)    <---------HSFC1(1)<---------ANAC46<---------MYB46(3) ---------AHL20(2)<---------AHL20(2)<---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   atttaaatatttaaaattattaattttaaaactgaaaataaatcaaaaactgtcttcttcgagaaagcagaacagttccgtcgaaacgaagagtggtttc  4880500                                     <---------YAB1                           ----------->GT1      <-                                    xxxxxxxxxxxxxxxx>smallRNA(i)            ----------->GT1      <---                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ALFIN1      <---               <----------ID1--------->YAB1                             --------->DAG2           <---               <---------ETT(1)    xxxxxxxxxxxxxxxx>smallRNA(i) <---------MYB46(3)              <----     ----------->GT1         <-----------GT1                >>>>>>>ZML2---------->DOF2 <---------YAB1 <---------ARR14(2)  --------->MYB52(1)    <---------TOE2(3)<---------HSFB2a(2)      xxxxxxxxxxxxxxxx   gaagaaccagaaaaattccgacaaaactgaatcacaattccgattgaggctctgttcgagttctagtcgttgctaaagtggagaaaatttcgatagggtt  4880600                                                                           <---------O2        <-----                                                                           <---------ANAC46    ------                                                                          <------NtERF2       -------                                                                        --------->DEAR3(1)    <------NtERF2                                                                        <---------DEAR3(1)   <-------                                                                        ----------->HVH21    ------>NtERF2                                                                       <------NtERF2         <-------                                                                       --------->ATERF1(1)   <-------                                                                       --------->RAP2.3(1)   <-------                                                                      <---------RRTF1(1)    <--------                                                                      <---------ORA47(2)    <--------                                                                      <---------DEAR4(2)    <--------                                                                      <---------RAP2.3(1)   ---------                                                                      <---------ERF1        ---------                                                                      ------>NtERF2         <--------                                                                      <---------ATERF1(1)  --------->At4g35610                                                                     <---------DEAR3(1)    <---------At4g35610                                                                     --------->ATERF1(2)   <---------ABI4(1)                                                                     <---------ATERF1(2)   --------->ATERF1(1)                                                                     <---------RAP2.3(2)   <------NtERF2                                                                     <---------RAP2.6(2)  <---------ORA47(2)                                                                     <---------ANAC46     <---------RAP2.3(1)                                                                     *TSS------>NtERF2    <---------ATERF1(1)       --------->ALFIN1                                              <---------RRTF1(3)   <xxxxxxxxxx   ---------->DOF2       <---------DAG2                              <---------RRTF1(2)  <---------DEAR3(1) --------ZAT6     <--------ATHB1                                     <---------RAP2.3(3) <---------DREB2C(2) ------ANAC46     --------->YAB1                                     <---------DREB2C(2)--------->ATERF1(1) ------ANAC58    <---------ATHB51                         <---------ARR11(3)          <xxxxxxxxxxxxxx ------ANAC58  --------->YAB1                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------RAP2.3(3) ---TEIL --------->ALFIN1<----------DOF2   --------->MYB52(1)<----------DOF2      xxxxxxxxxxxxxxxxxxx >smallRNA(i)------------>CBF              <-----------GT1--------->ARR11(3)   <------ZmHOX2a(1)   <-   cgtgttaaagtgtggaacaataatacgctttttgggtttatcgattaactgttcatagaagagctctaatggcggcgacgaggaagagtagtcggcggcg  4880700                                      --------->GLK1(2)                                      --------->ARR14(2)                                 ------>NtERF2                               <------NtERF2                               --------->ATERF1(1)                              <---------ATERF1(1)                              ------>NtERF2                             --------->DEAR3(1)                             ----------->HVH21                             <---------DEAR3(1)                            --------->ATERF1(1)                            --------->RAP2.3(1)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->ARR14(2)  <------NtERF2        --------->ARR11(3) <---------RAP2.3(1)     <---------ANAC46      <---------ERF1    <---------LBD16        <---------DEAR4(2) <---------HSFB2a(1)       <---------ORA47(2) <---------HSFC1(2)        <---------RAP2.6(1) --------->HSFC1(2)        <---------ATERF1(1) ----ANAC46                <---------RRTF1(1) --->DEAR3(1)              ------>NtERF2 -->ATERF1(1)             <---------RAP2.3(3) --DEAR4(2)               <---------RAP2.3(2) --RAP2.3(1)              <---------ATERF1(2) --ERF1 <---------ARR14(2)<---------DEAR3(1) --ATERF1(1)              --------->DEAR3(1) -RAP2.3(3)               --------->ATERF1(2) -RAP2.3(2)              --------->ATERF1(1)                                          --------->ARR11(3) -ATERF1(2)              <---------LBD16                                              <---------ARR11(3) >ATERF1(2)              <---------ABI4(1)                                  <---------WOX13(1) >DEAR3(1)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->ATHB12 -DEAR3(1)            <---------At4g35610       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->GLK1(2) xxxxxxsmallRNA(i)    --------->At4g35610      --------->MYB52(2)         <--------ATHB1 xxxxxxxxxsmallRNA(fl3)<---------DEAR3(1)    <---------MYB52(1)          --------->ICU4 x>smallRNA(se3)      <------NtERF2   <---------ARR14(2)        <---------MYB52(1)<xxxxxxxxxxxxxxxxxx -----ZmHOX2a(1)      --------->ATERF1(1)    <--------P<---------MYB59   <---------YAB1   <---------TOE2(3)   aggagtttcggatattgatgaggcatcggcggcgacgacaaatctgggttagttttccctaacttcgtttggagaatgattgattcaaaatctaggttaa  4880800                                                                                            <--------                                                                                            <--------                                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                             ---------->DOF2<--------                                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                     --------->LBD16     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                     ------>NtERF2     <---------ANAC46    ------->TEIL                                                    --------->ANAC46   ----------->GT1   <---------SPL7           <---------At4g35610   --------->MYB52(1)<---------LBD16  <---------WOX13(1) <-------------      --------->GLK1(1)         ---------->DOF2  <-----------GT1  --------->ATHB12    <---------ANAC46 xxxxsmallRNA(s2)--------->AHL20(2)         ---------->ID1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <---   ttttagagatttcaactcataaattttcaattgacaaagggattttgtttttttccgccaaaaacagttgattgagtataaaaggtttcggtgtacgtgt  4880900                                                    <---------ARR11(3)                                                    --------->ARR11(3)                                           --------->ANAC55(2)                                           <---------ANAC58                                           <---------ANAC58                                       ---                                          ------->TEIL                                           <---                                        <---------ZAT18                                         <---- -ANAC58                                <---------ZAT14                         <---------------AtSPL3 -ANAC46                <------MYB83  <---------------AtSPL8                   ====================== -ANAC58                <------MYB46(1)<---------ZAT6                          <------ZmHOX2a(1)----- --AtSPL3           --------->MYB52(2)--------------->AtSPL8                <---------LBD16  -------- ------ARR14(2)<---------YAB1         <---------------AtSPL3             <----------DOF2    <--------   atatgaaaatcgagtttatgtttagttggtatttggatatagtgtacgtgttaagaacttcttcgtcttgctcaactttcaggaagtacttctaatgatc  4881000                                                                                                   <-                                                                                               ------                                                                          <-----------------------TaNAC69(2)      <-----------GT1  --------->ZAT18                                   --------->ZAT18       ------ ------>LBD16          <---------ZAT18                         --------->SPL7                  <----- ------ANAC46       <---------ANAC58      <---------STY1(2)  <---------ZAT18                   ====== -----LBD16         <---------ANAC46      --------->STY1(2)  --------->ZAT18         <<<<<<<<<<WRKY38 ==HOX2a_HOX2a      <---------ANAC58     --------->ANAC58   --------->ANAC55(2)      <<<<<<<<<<WRKY26 ->ZmHOX2a(2)     <---------MYB46(3)     --------->ANAC58   <---------ANAC58  <-------TEIL     ------ >HAHB4          <--------P     --------->ZAT6              <---------ANAC58  <---------ZAT14  <----- -ATHB12 ----------->RAV1(1)   <------ZmHOX2a(2)            <---------ANAC55(2)      <<<<<<<<<<WRKY43   cgggtgaattaccacagaggttgtttgcactcgatcactaccctagcaaggcgaagataaatgcgtactccagagcggagtacattggtcaaatagcagc  4881100                                                                                       --------->HSFB2a(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <---------HSFB2a(2)            ----------->RAV1(1)                 ----------->HVH21                 <----------DOF2           <xxxxxxxxxxxxxxxxsmallRNA(i)       <------MYB83                --------->ANAC58           <xxxxxxxxxxxxxxxxsmallRNA(s)       <------MYB46(1)  ------>ZmHOX2a(2)  ------>ZmHOX2a(1)           --------->ANAC58            --------------->AGL15   ==========================HOX2a_HOX2a       <------ZmHOX2a(1)              <-----------GT1         ===========================HOX2a_HOX2a     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <---------------AGL15  <----------DOF2                  <---------ARR14(2)         <------ZmHOX2a(2)  --------------->AGL15 --------ANAC46                    --------->ARR14(2)        --------->ARR14(2) <-----------------AGL2 ----->RAV1(2)         <---------ANAC58==========================================================MADS_MADS --->At4g35610         <---------ANAC58<---------------AGL15 <---------ARR14(2) <-----------------AGL3 ----ZAT2  --------->ANAC58        <---------GLK1(2)        <------ZmHOX2a(1)   <-----------------AGL1 =======================RAV     <---------HSFB2a(2)    <----------DOF2    --------->ANAC58 --->ZAT2  --------->ANAC46     --------->HSFB2a(2)<-----------------AGL1 --------->ANAC46 ----At4g35610         <---------bZIP60(2) <---------MYB52(1)--------->ARR11(3) ----------------->AGL1   tgcgcttaaggacacaccagaaatgacgttccttctagattctccatttggtgacctctttaggatccctactaacaaggcatccttttctggtaaactt  4881200  Previous    Next  AGI:  At2g12100.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28480.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42580.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G45090.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Collagen triple helix repeat; (InterPro:IPR008160) Range:  from: 4880669    to: 4885648    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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