Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                               --------->YAB1                                                <XXXXXXX                           <---------AHL20(2)                                                <-------         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                --------        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                --------      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <----------DOF2       <-------   <----------DOF2         --------->AHL20(2)                        ---------->ID1 <---------AHL20(2) ---CCA1(2)    <xxxxxxxxxxxxxxxxsmallRNA(i)                      <---------MYB52(1) --------->AHL20(2)   cttaactttcaaacccgattgaagtctatttaaacataagttgtattactgaaacacaagttgttcagtttgtcttttctattgaataaaatagaagttt  4826000 <---------YAB1 --------DOF2      --------->ATHB12 XXXXXXXXXXXXXMIR159C<---------WOX13(1) --HSFC1(2)    --------->ATHB12                                                        <----------DOF2 ->HSFC1(2)<-----------GT1 <-----------GT1<----------DOF2                            --------->GLK1(1) ->HSFB2a(1) --------->ANAC55(2)       <-----------GT1                       <xxxxxxxxxxxxxxxxsmallRNA(i) --HSFB2a(1) <---------ANAC55(2)   <------------------------ANAC81       xxxxxxxxxxxxxxxx>smallRNA(i)   cttttgattcaagttacttattgattgattttctctctgttttactttgtttctgttttgagacttaagtttctaacatggtatcagagctctattgatt  4826100                                                             <------ZmHOX2a(2)     <---------ANAC55(2)                                                            --------->ARR11(3)     --------->ANAC55(2)                       --------->ANAC58                     <---------ARR11(3)--------->WOX13(1)                       --------->ANAC58                --------->TOE2(2)     <---------AHL20(2)          --------->LBD16                              --------->TOE1(2)     --------->AHL20(2)      --------->ARR14(2)                              =============================RAV      <---------ARR14(2)                        --------->AHL20(2)     ----------->RAV1(1)     <-----     --------->WOX13(1)----------->GT1---------->DOF2 ----------->RAV1(2) --------->YAB1       ------   caagggccaatccgagtacaaagacaagaaaaattcagacaaaagttctattaaaaacctgagatcatggatgcaacaataaatcaagtgattcccatat  4826200                       <---------ANAC58                       <---------ANAC58                       <---------ANAC46           <---------ICU4           -------->HAHB4           <---------AHL20(2)                                              <---------ANAC46          <---------YAB1                                                --------->ALFIN1          --------->ICU4 <------NtERF2                                  <---------ANAC46       --------->ICU4 <---------LBD16                                --------->ALFIN1    ----------->GT1 <-----------RAV1(1)                          ---------->DOF2              ------- ----ARR14(2)   <----------DOF2                               <---------ANAC46<---------ZAT14 <------ --->ARR14(2)<---------YAB1   <---------TOE2(3)               <---------HSFB2a(2) <---------ZAT6   tcgatggggataattattctttctggcggattaagatgaagaccatcttaagaacacagaagttgtggaaagtggtggagtctagtgttcgaagtatgct  4826300                                                                                                    <                                                                                                  <--                                                                                                  ---                                                                 <---------ARR14(2)               <--                                                                 --------->ARR14(2)               <--                                                            ---------->DOF2                      <---                                                          <---------YAB1                         <---                                                    <-------TEIL<------ZmHOX2a(1)                ----                                                  *TSS  <---------ICU4                           <---                                         ------>MYB46(1)--------->YAB1                          -----                                         ------>MYB83--------->YAB1         <------NtERF2       -----          <-----------GT1            >>>>>>>>>MYB2--------->ARR14(2)       <---------At4g35610  <---- -->At4g35610                 <------------CBF    <---------ARR14(2)       --------->At4g35610  ----- ---At4g35610              ------------>CBF      <------ZmHOX2a(1)        <---------DEAR3(1)    <----   gatgcaacgatatcacagtacataagccgttcaattgaaaaccaaatgggaggattcatcatcaaaggatttgatggcgctgcaactcttgcaaactgcc  4826400         <---------GLK1(2)         --------->ARR11(3)     ===================HOX2a_HOX2a     <------ZmHOX2a(2)    <---------ARR14(2)    --------->ARR14(2) <---------ANAC55(2) --------->ANAC58 --------->ANAC55(1) --------->ANAC58 --------->ANAC55(2) ---------LBD16 -------REM1(2)                                                                              -------- -------->HVH21                          ---------->DOF2                                     -------- -------MYB52(1)                     --------->bZIP60(2)                                    <-------- ----NtERF2                          --------->REM1(1)                        --------->HSFB2a(1) ------RAP2.6(3)              <---------At4g35610                             --------->HSFC1(2) --------TGA1                 <---------ZAT2                                  <---------HSFC1(2) -->NtERF2                    --------->At4g35610                            <---------TOE2(3) --------HVH21                --------->ZAT2                                 <---------TOE1(3) ---->RAP2.6(2)              --------->ANAC46   --------->ATHB12      --------->ATHB51      --------- ---->ATERF1(2)           ----------->RAV1(1)<------ZmHOX2a(1)        <---------ICU4  --------->LBD16 -----ATERF1(2)  --------->LBD16   ----------->RAV1(1)               <---------YAB1  --------->HSFB2a(2) ---->bZIP60(1)  <---------LBD16--------->RAP2.6(2)                  --------->ICU4  <---------HSFB2a(2) -----bZIP60(1)  ------>ZmHOX2a(1) <---------ALFIN1                --------->YAB1   <---------LBD16 <   gtcacggatcagatttttcctcggatagcaccagcagccacatcaaaggatgtttggaatgcattggagtcataatttgaaggttctccagaagtacgct  4826500                                                                                      --------->ATHB12 ->ANAC58                         --------->TOE2(3)                                <-----------------AGL1 ->ANAC58                    --------->YAB1                                        <-----------------AG -ZAT18                     <---------YAB1         <------ZmHOX2a(1)             <---------AHL20(2) >ZAT18                  --------->ICU4   <---------YAB1                      ----------->GT1    <--- <<<<<<<<<WRKY26   <------ZmHOX2a(1) ---------->DOF2                  --------->ZAT6<---------WOX13(1)   tgatcaacttgcagtcgtttaggagggattatgaaaacttaaagatgaatgaaggagacatcatcaagtttttcactaacaagttaattgatttggcaaa  4826600                                                                 --------->HSFB2a(2)                                                                 <---------HSFB2a(2)                                                         <-----------GT1                 <----------DOF2                                                     --------->ICU4        ----------->HVH21                                                     ------>ZmHOX2a(1)   --------->CCA1(2)                                                 --------->ARR11(3)     <---------ARR11(3)                                                 <---------ARR11(3)     --------->ARR11(1)                                                <---------HSFB2a(1) ---------->DOF2    --------->ZAT14                                                <---------HSFC1(2)--------->ANAC46     <---------ZAT14         <-------TEIL                           --------->HSFB2a(1)--------->LBD16--------->ZAT14 ------ATHB12                                   --------->HSFC1(2)--------->LBD16 <---------ZAT14 <--   tcagttaagagttcatggagaagagaagacaggttatcaaattgttcagaaggtccttatttctcttcccgaaagatttgacagcatagtgctgtaatgg  4826700               --------->bZIP60(1)               <---------bZIP60(1)            ----------->HVH21           ------>ZmHOX2a(2)          <------ZmHOX2a(2)          --------->At4g35610          <---------At4g35610         <---------AGP1 <---------ATERF1(2)         --------->GLK1(2)         <---------ARR14(2)         <---------ARR11(3)         --------->ARR11(3)                                             <---------ANAC58         --------->ARR14(2)                                        <---------ANAC58        <------ZmHOX2a(1)  ----------->HVH21                       --------->ALFIN1       --------->HSFB2a(1)--------->At5g28300            <-------MYC3   <---------ANAC46   <---------WRKY18(1)       --------->HSFC1(2) <---------MYB52(1)             ------->MYC3   <---------ANAC58  -----------       <---------HSFC1(2)--------->LBD16               <-------TEIL<---------ANAC58 ---------->DOF2    --------->TOE1(2)   --------->ATERF1(2) <---------GLK1(1)    --------->ALFIN1 <---------YAB1 --------->MYB52(1)    <---------LBD16      --------->GLK1(1) --------->DAG2 --------->ANAC55(2) -------At4g35610      <---------ANAC46   <------ZmHOX2a(1)  ---------->DOF2 <---------ANAC55(2)   <-   agcaaacgaaggatctgacatcgttgccggtaacagagttgataggaactctgaaggcacatgaaaagtgtgtgtcgtctcgtaatgaaagcatgaccga  4826800                                                                            ---------->DOF2                                                                     ----------->HVH21          <----       <---------ANAC46                                            <---------ANAC58        <---------ANAC58       <---------AtLEC2                --------->SPL7              <---------ANAC46        <---------ANAC46       <---------ANAC58              <---------SPL7            <---------WOX13(1)          --------->ALFIN1 >HVH21<---------ANAC58      --------->DAG2                  --------->ATHB12  ----------->GT1  ----- -----ZmHOX2a(1)            ---------->DOF2    <------ZmHOX2a(1)   <---------ANAC58        <---------ANAC58   aggagcattgcatgttttatcacgagaaggaaaagtcgttgtacgacgaggagaaatgaagagtaattggcgtgacaacaaaggcaaaaaatggtgtgga  4826900  Previous    Next  AGI:  At2g11950.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.9e-158 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family) Range:  from: 4826350    to: 4832929    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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