Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 ----------->GT1                                                              --------->ALFIN1                                                      ------->MYC2                                                      <-------MYC3                                                      ------->MYC3                                                      ------->PIF5                                                      <-------PIF5                                                      <-------MYC4                                                      <-------MYC2                                                      ------->MYC4                                                     <---------ANAC55(2)--------->YAB1                            ===================================bZIP_DOF<---------YAB1                            ---------->DOF2          <---------TGA1a<---------YAB1  --------->TOE2(3)        <------ZmHOX2a(1)         <---------ANAC46--------->YAB1 <---------ICU4    <---------------AGL15             <---------O2--------->ICU4 --------->YAB1    --------------->AGL15             --------->O2<---------YAB1             --------- ---------ATHB12  <-----------------AGL1             --------->TGA1a--------->ICU4     --------->At4g35610 ------>WOX13(1)  <-----------------AG              ------------>OsbHLH66            --------->MYB46(3) -----ATHB12      <-----------------AGL3          ---------------->PIF3(2)         --------->MYB52(1) -GT1             <-----------------AGL2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ------->TEIL<--------   caatcatcaatttttagttttctgatataggaaaggagggctaagaagagtagacacgtggacagtggtgattataagaatgaatcaacggctgagatga  4806800               <---------ANAC46               ----------->GT1               <------MYB46(1)               <------MYB83                                                   --------->YAB1              <------MYB83 --------->ZAT2                                     <---------ICU4              <------MYB46(1)     --------->ARR11(3)            <---------YAB1<--------ATHB1          <---------MYB46(3)      <---------ARR11(3)          <---------AHL20(2)            <-------GAMYB          --------->ATHB12 --------->At4g35610               <---------AHL20(2)            --------->MYB52(2)    ---------->DOF2        <---------ZAT2               <---------AHL20(2)    --------->ATHB51  <---------YAB1    ---------->DOF2<------ZmHOX2a(2)<---------AHL20(2)       <---------AHL20(2) >At4g35610 <--------P<---------TOE2(3)            <---------AHL20(2)        <---------ATHB51 -At4g35610<-------GAMYB   <---------At4g35610  <---------AHL20(2)     ----------->GT1  ------------>MYB.PH3(2)   agttatcaaagatggttgggtttaaaggaagctgaagatcagaattggatttttttatttttttttattttagtcgtgaataattgttgaagttagttgt  4806900                                                                           ------>ZmHOX2a(2)                                                                         --------->ARR11(3)                                                                         --------->ARR14(2)                  <---------TOE1(2)                                      <---------ARR14(2)          <---------TOE2(3)                ------>ZmHOX2a(1)             <---------AGP1             -          <---------TOE1(3)          <-------TEIL                     --------->ALFIN1            ---      <----------DOF2            <---------YAB1 --------->REM1(2)<---------AtLEC2                 <--   tcttccctctttgaggtttctaggttttgagtaatatgattcatcctctgtgaagaacattgctcttgcaaggtggatctagtgattcccctgttttatg  4807000                                                                                   ----------->GT1                                                                                   ------>ZmHOX2a(2)                                                                                 --------->ARR14(2)                                                                            <-----------GT1                                                                          <---------WOX13(1)                                                                      <---------WOX13(1)          <--                                                                      <--------P <---------ARR14(2)                                                                     <-------GAMYB<------ZmHOX2a(2)                                                                   <---------AtMYB61        ---------      <------ZmHOX2a(2)                                   ------>ZmHOX2a(2) --------->MYB52(1)<------ -------->TOE1(2)                                 <---------MYB46(3)<---------MYB46(3)--------->ATHB12 ---->TEIL              --------->YAB1           <--------P        <---------TOE2(3) <---------YAB1 -------YAB1       <----------DOF2              <-------GAMYB <---------MYB46(3) --------->ARR11(3) -   aacattggatcacattgttatctttttcatattaatcggaagtgtttttgggttgtttgatcgattgttgtggttgattaacagatcgtgatttgtcttt  4807100                                                                                    <---------DAG2                                                                                    <----------DOF2                                                                             --------------------->WRI1                                    ----------->GT1           <---------YAB1<---------ANAC58                                --------->ATHB12       <---------DDF1       <---------ANAC58                          --------->ANAC46            --------->ETT(2)   ------>ZmHOX2a(2)         --                         --------->LBD16              <---------ETT(2)  <---------At4g35610     ----- -------YAB1             ------>ZmHOX2a(1)       <------ZmHOX2a(2)     --------->ARR14(2)       ----- ->ID1<-----------HVH21  <---------LBD16        --------->ARR11(3)     <---------ARR14(2)       ----- ----DOF2                ===============================HOX2a_HOX2a--------->At4g35610    <---------ANAC58 --------->DOF2<-------TEIL    ------------>CBF <---------ARR11(3) <---------At4g35610    <---------ANAC58   atcaaaggtatcagagcttcgtttttcctcggaatcaatggcaaaatcaagatcgatcgacatgaagatagctgatctgcttgcgacttttcgcttgcac  4807200                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                            <-------TEIL     ---------->DOF2                                                                     <---------ZAT2    <---------WRKY12                                                                     <---------At4g35610 -------->DOF2                                                                   --------->DAG2 ---->ANAC46             *TSS                                         <---------ANAC58   --------->ZAT2 ---->ANAC58           <------ZmHOX2a(2)                              <---------ANAC58   --------->At4g35610 ---->ANAC58  <-------TEIL            ---------->DOF2           <---------YAB1  ---------->DOF2   gcaaagtcaaaggaaattcatgtagatcaaattgcagagctaaagcagttaagagagacttacaatattgttgagtatcacaaaaagtttgagctgcgta  4807300                         <---------ANAC58                         <---------ANAC58                  <---------GLK1(2)                         --------->ARR11(3)            ----------->HVH21                  <------MYB46(1)            ----------->GT1          <---------At4g35610                  <------MYB83 --------->ARR14(2)         ------->TEIL  <-----------GT1        <---------AtMYB61          ----------->GT1 --ANAC58<---------ARR14(2)                 <---------AtLEC2<---------ARR14(2) --ANAC46--------->ARR14(2)        --------->GLK1(2)        <---------GLK1(2)             --------->TOE2(3) --ANAC58--------->GLK1(2)        <---------GLK1(2)       ----------->ARR10  <---------AHL20(2)   gcacaagagtgaatctgacagaatattacttggttagaatctatttggatggtctacaaatagatactcaagtgaatgttaaaatgtttcagcctcaaac  4807400                                                                             --------->ZAT6                                                                          ------>ZmHOX2a(1)                                                                       <------ZmHOX2a(2)                                                                      <---------ARR14(2)      <------                                                                      --------->ARR11(3)      <------                                                              <---------TOE2(3)  <---------ZAT14                                                  --------->At4g35610 --------->ARR14(2)      -------                                        --------->ANAC46     <---------DOF5.7(2) --------->ZAT14                                       ------->TEIL       --------->YAB1------>ZmHOX2a(2)     -------                          --------->AHL20(2)   ---------->DOF2<---------TOE1(3)--------->ANAC46     -   gattcaacaatgtttctcaattggaagattatatgagtatgcacatcatagaagcagcattgataacgttgggatccttacactgaagagagatagtgaa  4807500                                                                                                 <---                                                                                                <----   --------->At4g35610                                                                <---------ICU4 ---ZAT14                                                                             --------->YAB1 ---ZAT18             >>>>>>>>>TBF1                                                   <------------ATHB5 -->ZAT18   <------ZmHOX2a(1)           <---------YAB1                               <---------ATHB12 -->ZAT14<------ZmHOX2a(1)        <---------TOE2(3)                                  --------->ICU4 --------->DOF2--------->MYB52(1) <---------TOE1(3) <---------MYB52(1)             --------->WOX13(1)   ctaaaagctgaggaggataacgaagaagaaggaattgaggttaagatggaatcggttgtctgagaagacaatttagtacatggagcaatcatggaagagg  4807600                               --------->GLK1(2)                              --------->ARR14(2)                <---------At4g35610               <---------------AtSPL8     <---------ZAT14          <---------GLK1(2)             --------->HSFB2a(2)     --------->ZAT18          <---------ARR14(2)            <---------HSFB2a(2)                 <----     --------->ZAT14----------------->AGL3    <------ZmHOX2a(1)          ---------->DOF2     <------- ------ARR14(2)--------------->AtSPL8       <---------TOE2(3)   ----------->GT1              -------- --ZmHOX2a(1) <-----------RAV1(2)       <----------DOF2    <---------LBD16                  <------ZmHOX2a(1)   aatcgagttcacagtttcaggtaccaatttcagattctgagactttgaggaatattgaacttggggaagaaaattcaaagttggaaactctagaggatgc  4807700  Previous    Next  AGI:  At2g11880.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 4807225    to: 4809045    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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