Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         ----------->GT1    ---------->DOF2   <---------AHL20(2)  <---------AHL20(2)                     <---------ALFIN1  --------->AHL20(2)                   ------>NtERF2                    --------->AHL20(2) ------>AHL20(1)            --------->TOE2(3)                           <---------AHL20(2) -------AHL20(1)          <---------ARR11(3)                         --------->TOE2(3) -------AHL20(2)          --------->ARR11(3)                  <---------MYB52(1) ------>AHL20(2)          --------->ARR14(2)              <---------ANAC58 ----->AHL20(2)           <---------ARR11(1)              <---------ANAC55(2)       --------->YAB1 <- --->TOE2(3)              <---------ARR14(2)              <---------ANAC46 <---------ARR11(3)      -- -->ATHB12               <---------ARR14(1)               <---------ANAC58 --------->ARR11(3)     <-- -->YAB1                 --------->GLK1(1)                --------->ANAC55(2)       --------->AHL20(2) ---ICU4                 <---------GLK1(1)                <---------ANAC55(1)      <---------ATHB12-- --ATHB12                <---------CCA1(2)        <---------AtLEC2 <---------AHL20(2)           -----   taaattaaaaggtataaacgaagaagcatatcttaaactgccccctcgtttttcatggttacctgttaattcattaaaatctccaattaaaaaccaaggt  4763600                   --------->LBD16                  <---------ANAC55(2)                  <---------ANAC58                  <---------ANAC46               ------>MYB83               --------->ARR14(2)         <---------SPL7        <---------ANAC58 <---------At5g28300        <---------ANAC58<-----------GT1       --------------->AtSPL3   --------->LBD16<---------ANAC55(1) --------ARR14(2) <---------ANAC58                                                     <---------YAB1 ------->ARR14(2) --------->ANAC55(2)                                               <---------YAB1<-- -------CCA1(2)<---------ARR14(2)                                           <---------TOE2(3)     <-- ----->TEIL    ------>MYB46(1)             ------>ZmHOX2a(2)              ---------->DOF2        ---- ---->ALFIN1  --------->WOX13(1)         <---------ARR11(3)              <---------AHL20(2)   <------   gtatcccgagtcgtaccaatccgtgttaaccgttcccagacttgatctatattctttggtactgggtctccatatataaaggtaagattattagttttac  4763700                                                                    <---------YAB1                                                            -------->ATHB1                                 <----------DOF2       --------->AHL20(2)                             <---------MYB52(1)        <---------AHL20(2)                             --------->ARR14(2)     --------->TOE2(3)        --------->At4g35610----------->GT1   <---------WOX13(1)  <---------YAB1        --------->AtMYB61 --------DOF2          --------->MYB52(1)  --------->ATHB12 --------->ATHB12          --------->MYB46(3) -------DAG2           <-----------GT1     -------->HAHB4   <---------ICU4          --------->ANAC46 ----->TOE2(3)     --------->WOX13(1)     <---------YAB1    --------->YAB1 --------->DAG2 -----GT1       <---------ARR11(3)        --------->ICU4   <---------YAB1 ---------->DOF2   ctttatgaacagcttcaatatcaattaaccggttactttgaaaaatgattgaaacattaaaatcattgttataaaaaaaagctaatccaccactaaaacc  4763800                <---------AHL20(2)            ----------->GT1            <---------MYB46(3)                                                               <-------           <---------MYB52(1)                                                           <---------AHL20(2)        --------->MYB46(3)              ------>MYB83        <---------ANAC58            --------->AHL20(2)     <---------WRKY38(1)                ------>MYB46(1)     <---------bZIP60(2)         --------->AHL20(1)     <---------WRKY12 <---------YAB1 --------->MYB46(3)     <---------ANAC46         --------->YAB1 <    --------->WRKY18(1)       ---------->DOF2   <-----------GT1                    --------->AHL20(2)   <-----------HVH21 --------->AHL20(2)----------->RAV1(1)  <---------ANAC58      --------->YAB1  <--   aatagggtcaaccgttgttaaatttttatagccaaagtgaccaacaaatttttccatatataacgtggattgttttgtttccgataaaaataaaatgtcc  4763900                                         --------->TOE2(3)                       <---------DAG2                                   --------->ATHB12                              <----------DOF2                                   <---------MYB46(3)                            *TSS                                  <---------ATHB12                         --------->YAB1         <-----------GT1    <-----------GT1                                <---------ICU4 ----HVH21     <---------ATHB12 --------->MYB52(1)                        <---------YAB1         <--- ---------MYB46(3) ------>ZmHOX2a(2)     <---------DAG2                 --------->YAB1           <--- -------MYB52(1)--------->YAB1--------->MYB46(3)  ------>ZmHOX2a(1)     <---------ICU4           <---   ggtcgatgttttttccaatgatccctcaaataaccaatggttgccttatttcctaagacaattccaacttaaaatcatcatagctttttcaagtttttta  4764000                                                                               <----------DOF2                                                                       --------->AHL20(2)                                                                       --------->AHL20(1)                                                                       <---------AHL20(2)       <----                                                                      --------->AHL20(2)       ------                                                                      <---------AHL20(2)       ------                                                                  <---------AHL20(2)           ------        ------>ZmHOX2a(1)                                         --------->AHL20(1)           ------        <-----------HVH21          --------->TOE1(2)              --------->AHL20(2)      <--------P ------TOE1(3)                   <---------ARR11(3)         ----------->GT1 <-----------GT1   ------- ------YAB1 --------->ANAC46     --------->ARR11(3)      --------->ALFIN1  --------->AHL20(2) <------ ------TOE2(3)  <------NtERF2---------->DOF2      ---------->DOF2--------->AHL20(2) ------>ZmHOX2a(1)   tggtaaactccttcaggccccttctcccgtttaaagaccttcgaaatgaacacaaagatgtgttgaaaaaaattaaattaactttcctcgaggttgccag  4764100                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -   ----------->GT1           <---------WOX13(1)                 --------->MYB52(1)                  < --NtERF2                  --------->ATHB12                  <---------ANAC55(2)      <---------WRKY18(1) --->ANAC58               ------>ZmHOX2a(1)               ------>ZmHOX2a(1)          ----------->HVH21 >NtERF2                  <---------YAB1                 --------->TOE2(3)     ----------->HVH21    - --->ANAC58             --------->YAB1            --------->GLK1(2)            --------->DEAR3(1)   < --->ANAC46       --------->ANAC58               <---------GLK1(2)      <-----------GT1             - -->ATERF1(2)     --------->ANAC46           ---------->DOF2 --------->ANAC55(2)------>NtERF2-------- ---ATERF1(2)     --------->ANAC58   ----------->GT1     --------->TOE1(3)     <---------ETT(1)   <--   caatgtggcaaattccaaacacacaatcctgattggaaatagtttaaaaaagattctatccttaagtaacagataaactctccgaccatgaccgataata  4764200    >>>>>>>>>>>>>AGL25 <---------------AGL15 --------------->AGL15 -----------------AGL1                                                            --------->DAG2 ---------------->AGL1                                                           ---------->DOF2 -----------------AG                            ------>ZmHOX2a(1)            <----------ID1 ---------------->AGL2                         --------->TOE2(3)            <---------TOE2(3) -----------------AGL3                      --------->ARR14(2)              ----------->GT1 ---------------->AG                        <---------ARR14(2)      <---------ANAC55(2) -----------------AGL2                 <------MYB83                 --------->ANAC55(2)          ---- ---------------->AGL3                 ----------->GT1              --------->ANAC55(1)        <----- ->AHL20(2)                            <------MYB46(1)              --------->ANAC46  <----------DOF2 ---------GT1<---------ANAC55(2)      --------->MYB59     ---------->DOF2 ---------->DOF2  <---------   taaccaaaaatggaaacgtgaacaatgaccctcagataagttggtaaatcctcaataaccaaaagaaaacacataataaaggaaaaagcttttattcctt  4764300                                                                             --------->GLK1(2)                                                                             <-----------ARR10                                                                             --------->ARR11(3)                                                    --------->ANAC58         <---------ARR11(3)                                                    ----------->GT1--------->TOE1(3) <-----------GT1                            <---------YAB1         --------->TOE2(3)       ------->GAMYB ----->AHL20(2)                           --------->YAB1        <-----------GT1    <---------DEAR3(2) -----DOF2                     <---------YAB1       --------->ANAC58        --------->RVE1(1) --GT1                ---------->DOF2     <---------ICU4--------->AHL20(2)  --------->CCA1(1) -------   ttattacaacaatctcacaaatgacaaagcattgtgaatgtgaatcatcacagcaagaaaaaatagaaaccttacaaaaaatcttcggttcaaccgaata  4764400           <----------ID1          XXXXXXXXXXXXXXXXXXXX>MIR837-3P         <---------------AtSPL8        ---------->DOF2                     --------->ARR11(3)     <---------AHL20(2)                     <---------ARR11(3)     --------->AHL20(2)                 ---------->DOF2                         --------->AtLEC2 ---- -->ARR14(2)                      <-------TEIL     <---------LBD16  ------>ZmHOX2a(1)       ---------   cctagatttaaaaagaacaaaaaactgcaaaccatgttcataaaaagaacttattcggaatacacttatccttctcaactccatccaaactagtttgtaa  4764500  Previous    Next  AGI:  At2g11820.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 6.3e-40 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 4759864    to: 4763981    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version