Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       ------>ZmHOX2a(2)                                    --------->CCA1(2)                                   <---------AGP1                                   --------->AGP1                       ------>MYB83--------->ARR11(3)                  ------->GAMYB    <---------ARR11(3)                 --------->MYB46(3)--------->ARR14(2)                 <---------MYB111(2)<------ZmHOX2a(2)          xxxxxxxxxxxxxxxx>smallRNA(i)              <---------ZAT14            <----------DOF2     --       <---------MYB46(3) <----------DOF2           --------->ZAT14         <---------ARR11(3)     --   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ATHB12         ------>ZmHOX2a(1)       ----  <---------TOE2(3)    ------>MYB46(1)    --------->ANAC46     --------->ARR11(3)                ----   gtttaagaatggttcgataacaacctagctttcattagatctacaaaccaatagtttactgagaataccttgttcctagctctttactaaatcgttcaca  4717800     --------->WOX13(1)                     <---------ICU4   <---------ATHB12                      --------->ZAT6 ------>MYB46(1)                  <---------AHL20(2)               ----------->RAV1(1) ------>MYB83              ---------->ID1<-----------GT1  --------->TOE2(3)                     ----- ----->GAMYB            --------------->AtSPL8        <---------ANAC58                          <---- ------->AtMYB61    <---------AHL20(2) <-----------GT1<---------ANAC58                         <----- ----->ANAC58   <----------DOF2 <----------DOF2      --------->STY1(2)                         ------ ----->ANAC58  <------------------------ANAC81       <---------STY1(2)    <-----------GT1  ----------   accaaatcaatctattgtctttttattttgttctcttttattttcactattaccttgctagcttaatcccaacatttaactcattgtttgaacaaaagaa  4717900                                                                                                <----                                                                                          <---------HSFB2a(2)                                                                                       <---------MYB52(1)                                                                                       --------->ATERF1(1)                                                                                      <-------GAMYB  --------->LBD16                                                                    --------->DEAR3(1) --------->LBD16                           <---------------------WRI1               --------->ATERF1(1) ---->GLK1(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               --------->RAP2.3(1) -----GLK1(1) =========================HOX2a_HOX2a                                 ------>NtERF2----- ----ARR11(3) ------>ZmHOX2a(1) ------>ZmHOX2a(2)             --------------->AtSPL8<------NtERF2 --->ARR11(3)--------->TOE2(3)--------->ARR11(3)      <---------HSFB2a(2)          <---------RAP2.3(1) >DOF2     <------ZmHOX2a(2)  <---------ARR11(3)      >>>>>>>ZML2<-----------GT1  <---------DEAR3(1)   ctccctgaattcgatcctaaaatactgcaattgatctcttatttgagagaatagttctaggtaatttgaaccatatcaaatttggcgccgttgccgaagt  4718000          --------->ATHB12                                             <---------ANAC58          <---------ICU4                                               <---------ANAC58         --------->ICU4                                                <---------ANAC46         <---------YAB1                                              --------->ARR14(2)       <---------ICU4                    --------------->AtSPL8      <---------ARR14(2)       --------->YAB1                    <---------------AtSPL3     <---------CCA1(2)               x      --------->ICU4          --------->GLK1(2)                   <<<<<<<<CAMTA3                 <---     <---------KAN4(2)       --------->ARR11(3)                 --------->ANAC58                 ---- -----ARR11(3)               <---------GLK1(2)                  --------->ANAC55(2)            <----- ---->ARR11(3)               <---------ARR11(3)                 --------->ANAC58   <----------DOF2 --   tcttgggaatcatcattgagttttgtttagagattttgtttagtttgtacttctattttgttactcacgcgtttcttgttttcttcttttctgtatttca  4718100                                                                                          --------->AHL20(2)                                                                                      ------->GAMYB                                                                                     --------->MYB46(3)                                                                                    ------>MYB83                                                                                    -------->P                                                                                    ------>MYB46(1)                                                                                   --------->MYB55(1)                                                                                  --------->DEAR3(1)                                                                                  <---------MYB55(2)                                                                                  <---------MYB111(2)                                                                                  --------->MYB46(3)                                                                                  <---------MYB111(1)                                                                                  --------->AtMYB61                                                                                  <---------MYB46(2)             --------->ANAC58                                                    --------->MYB46(3)             --------->ANAC58                                                    --------->DEAR3(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                           ------->TEIL ------At4g35610                   <------ZmHOX2a(1)                          --------->ZAT18 ----->At4g35610           --------->MYB52(1)            --------->HSFB2a(2) --------->ANAC46 ------RAV1(2)        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------HSFB2a(2) --------->ANAC58 ------->ALFIN1      --------->At4g35610             <---------ZAT14         --------->ANAC58   ggtgtatgcctaggcaaacaaggagcacaaaacagaaggagcttatcaacttgtctgttctggacttgggaaaacttgaacgcaccaaccaaaaaattca  4718200                            <---------At4g35610                   --------->ANAC58                 <-                         ---------->DOF2                          --------->ANAC58 <-----------HVH21            ----------->HVH21                           <---------TOE2(3)         <------MYB46(1) <--           *TSS ---------->DOF2  <---------REM1(1)  --------->CCA1(2)   xxxxxxxxxxxxxxxx>smallRNA(s)    ------------>CBF   <---------YAB1    <------ZmHOX2a(1)<------ZmHOX2a(1)       <------MYB83    ---   gaaattagcaatggctgacaaagtcatcaaagctgatgtagaaggagttttgagagatgaggatgggcaggcctacaatgaggctggtcagagattggat  4718300                                   <------ZmHOX2a(2)                                  --------->ARR14(2)                                 <------ZmHOX2a(1)                                                  x                              --------->YAB1                               --------->At4g35610   ----                             <---------ATHB12                              <---------ZAT2       -----                       --------->RAP2.6(2)                                 --------->ZAT2<---------ANAC58                       --------->ANAC46             --------->ANAC58       <---------At4g35610-------                       --------->ANAC58             --------->ANAC58      <xxxxxxxxxxxxxxxxsmallRNA(i)                       --------->ANAC58         ---------->DOF2          <-----------RAV1(2) --------           --------->YAB1   xxxxxxxxxxxxxxxx>smallRNA(s)               --------->ANAC58  --------->ETT(2)          <---------YAB1------>NtERF2     --------->ANAC58             --------->ANAC58  <---------ANAC58        --------->YAB1--------->SPL7<-----------RAV1(2)     <---------At4g35610         <------NtERF2 --------YAB1  ----------->RAV1(2)<---------ARR14(2)--------->ANAC46   --------->ANAC46<-----------HVH21 -------ARR11(3)     <------ZmHOX2a(1)    --------->ANAC58  --------->At4g35610    <---------DEAR3(1) ------>ARR11(3)     =====================HOX2a_HOX2a--------->LBD16 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   gatcatggactcatcatacctgaggacgccaatgaggatcaggctcgcctcaatgcgcaattagctgctagagacgcagcagggctcggtgtcgagcgac  4718400                                                                                    <---------SPL7                                                                                   --------->TOE1(1)                                                                                --------->TGA1a                                                                                <---------TGA1a                                                                                --------->bZIP60(2)                                   ------->MYC3                                 --------->O2                                   <-------MYC3                                 <---------O2                                   <-------PIF5                                 =====================                                   ------->PIF5                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   ------->MYC2                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                <---------ALFIN1                             --------->MYB46(3)         <------NtERF2      <---------At4g35610                            <---------ARR14(2)       --------->ALFIN1     <---------ZAT2                            --------->ALFIN1 ------>MYB83       --------->AtMYB61                            ------->GAMYB<---------ALFIN1 -------->P       ------>NtERF2--------->ZAT2                    =========================MYC_MYB ------>MYB46(1) --------->ANAC46  <---------LBD16            --------->MYB52(1)--------->ANAC46 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-------MYC2               ----------->RAV1(1)  --------->TOE2(1) -->NtERF2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ANAC46   --------->ARR14(2) ---->REM1(1) <---------ETT(2) --------->At4g35610      --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---->RAV1(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->ANAC58--------->ALFIN1 --->HVH21--------->ETT(2)  --------->At4g35610   <-----------HVH21   <---------ANAC46           ----   accaactaggtgtcgatcgacaccatcgggagcagcacgcggatgcaatcggtgtcaaacgacacaacagaggtgtggaaccacgtcgtactcttggaga  4718500                                                  <---------ALFIN1           --------->ARR14(2)                     --------->AtMYB61          <---------ALFIN1                     <---------ALFIN1             xxxxxxxxxxxxxxxx>smallRNA(i)     --------->ANAC46                          --------->ANAC46           ----------->HVH21     -----     --------->ANAC58                         --------->MYB46(3)        --------->At4g35610  <-------     --------->ANAC58                        --------->ANAC46           <---------At4g35610 <--------    ------->GAMYB              <------ZmHOX2a(2)------>NtERF2      --------->YAB1           <-------- ===========MYC_MYB   --------->YAB1      ------->TEIL  ---------->DOF2 --------->ZAT2  <----------DOF2 ----->GLK1(1)       <---------TOE2(3)--------------->AtSPL8      --------->ICU4       xxxxxxxxxxxxxx   tttcaacaggccagacctgttctatggtaatcgatcatcgattgtacccccaccattccaaaggaacgattatgagctgaagcctggctactttgcttta  4718600     <---------ZAT2     <---------At4g35610     --------->At4g35610     --------->ZAT2     <------NtERF2    --------->ANAC58              --------->RAP2.3(3)           --------->ARR14(2)    --------->ANAC58            <---------At4g35610             <---------ARR14(2) ---->MYB52(2)                  --------->At4g35610             --------->ARR11(3) ---DOF2              <---------CCA1(2)      --------->YAB1    <------ZmHOX2a(1) -ANAC58            <---------ANAC58        ==========================HOX2a_HOX2a                  -- -ANAC58            <---------ANAC58        <------ZmHOX2a(2)<---------TOE2(3)                     <- xx>smallRNA(s)     <---------ANAC46  --------->MYB52(1) <----------DOF2               --------->MYB52(1)   gttggccagcatccattccatggcttatctcatgagcagccaagggatcatattgagcgatttgaggattttgttttgagcatcaaggctaatggagttt  4718700  Previous    Next  AGI:  At2g11750.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 4.0e-85 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 4718211    to: 4720961    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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